Abstract:
:Miscanthus is a rhizomatous C4 grass which is considered as potential high-yielding energy crop with the low-nutrient requirements, high water-use efficiency, and capability of C mitigation. To better understand the genetic basis, an integrative analysis of the transcriptome and proteome was performed to identify important genes and pathways involved in Miscanthus leaves. At the transcript level, 64,663 transcripts in M. lutarioriparius, 97,043 in M. sacchariflorus, 97,043 in M. sinensis, 67,323 in M. floridulus and 70,021 in M. × giganteus were detected by an RNA sequencing approach. At the protein level, 1964 peptide-represented proteins were identified and 1933 proteins differed by 1.5-fold or more in their relative abundance, as indicated by iTRAQ (isobaric tags for relative and absolute quantitation) analysis. Phylogenies were constructed from the nearly taxa of Miscanthus. A large number of genes closely related to biomass production were found. And SSR markers and their corresponding primers were derived from Miscanthus transcripts and 90% of them were successfully detected by PCR amplification among Miacanthus species. These similarities and variations on the transcriptional and proteomic level between Miscanthus species will serve as a resource for research in Miscanthus and other lignocellulose crops.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Sheng J,Zheng X,Wang J,Zeng X,Zhou F,Jin S,Hu Z,Diao Ydoi
10.1038/s41598-017-14151-zsubject
Has Abstractpub_date
2017-10-23 00:00:00pages
13777issue
1issn
2045-2322pii
10.1038/s41598-017-14151-zjournal_volume
7pub_type
杂志文章abstract::This article aims to develop a generalized model calculation model to be applicable to the general theory of interaction potentials with reference to the stoichiometric elpasolite type crystals. In this study, we have chosen to report both a theoretical model and a calculation strategy to undertake semi empirical calc...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-55695-6
更新日期:2019-12-13 00:00:00
abstract::The prognostic value of current multigene assays for breast cancer is limited to hormone receptor-positive, human epidermal growth factor receptor 2-negative early breast cancer. Despite the prognostic significance of immune response-related genes in breast cancer, immune gene signatures have not been incorporated int...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-80274-5
更新日期:2021-01-08 00:00:00
abstract::Differences in the pathogenesis of radiation-induced lung injury among murine strains offer a unique opportunity to elucidate the molecular mechanisms driving the divergence in tissue response from repair and recovery to organ failure. Here, we utilized two well-characterized murine models of radiation pneumonitis/fib...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep36579
更新日期:2016-11-15 00:00:00
abstract::STRs, scattered throughout the genome with higher mutation rate, are attractive to genetic application like forensic, anthropological and population genetics studies. STR profiling has now been applied in various aspects of human identification in forensic investigations. This work described the developmental validati...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep31075
更新日期:2016-08-08 00:00:00
abstract::Gamma-glutamyl hydroxymethyl rhodamine green (gGlu-HMRG) is an activatable fluorescent probe that can be activated by γ-glutamyltranspeptidase (GGT). The expression of GGT in the kidney, which is one of the major organs exhibiting enhanced GGT expression, is exclusively localised to the cortex. Here, we aimed to inves...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-69077-w
更新日期:2020-07-21 00:00:00
abstract::We discuss subwavelength-scale semiconductor metal-optic resonators placed on the metal substrate with various top metal plate sizes. Albeit with large optical losses, addition of metal layers converts a leaky semiconductor nano-block into a highly-confined optical cavity. Optically pumped lasing action is observed wi...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep31793
更新日期:2016-08-23 00:00:00
abstract::We report comparative indoor and outdoor stability testing of organic solar cells based on a blend between a donor-acceptor polyfluorene copolymer and a fullerene derivative. The outdoor testing was conducted for a period over 12,000 hours in Sheffield, England, with a Ts80 lifetime determined in excess of 10,000 hour...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-01505-w
更新日期:2017-05-02 00:00:00
abstract::Anthropogenic radionuclides contaminate a range of environments as a result of nuclear activities, for example, leakage from waste storage tanks/ponds (e.g. Hanford, USA or Sellafield sites, UK) or as a result of large scale nuclear accidents (e.g. Chernobyl, Ukraine or Fukushima, Japan). One of the most widely applie...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep23361
更新日期:2016-03-18 00:00:00
abstract::Chromosomal polymorphism is widespread in the Drosophila genus, with extensive evidence supporting its adaptive character in diverse species. Moreover, inversions are the major contributors to the genus chromosomal evolution. The molecular characterization of a reduced number of polymorphic inversion breakpoints in Dr...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep36248
更新日期:2016-10-26 00:00:00
abstract::Despite the tremendous progress of quantum cryptography, efficient quantum communication over long distances (≥ 1000 km) remains an outstanding challenge due to fiber attenuation and operation errors accumulated over the entire communication distance. Quantum repeaters (QRs), as a promising approach, can overcome both...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep20463
更新日期:2016-02-15 00:00:00
abstract::An antiferromagnetic topological insulator has been predicted to be preserved by breaking both time-reversal symmetry and primitive lattice translational symmetry. However, the topological surface state has often been observed to disappear in an antiferromagnetic phase because the doped magnetic impurity acts as an ex...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-66521-9
更新日期:2020-06-15 00:00:00
abstract::Silicon has emerged as the most promising high-capacity material for lithium-ion batteries. Waste glass can be a potential low cost and environmentally benign silica resource enabling production of nanosized silicon at the industry level. Windshields are generally made of laminated glass comprising two separate glass ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-19529-1
更新日期:2018-01-17 00:00:00
abstract::Layered-structure materials are currently relevant given their quasi-2D nature. Knowledge of their physical properties is currently of major interest. Niobium ditelluride possesses a monoclinic layered-structure with a distortion in the tellurium planes. This structural complexity has hindered the determination of its...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-35308-4
更新日期:2018-11-19 00:00:00
abstract::Microglial activation is associated with glaucoma. In the model of unilateral laser-induced ocular hypertension (OHT), the time point at which the inflammatory process peaks remains unknown. Different time points (1, 3, 5, 8, and 15 d) were compared to analyze signs of microglial activation both in OHT and contralater...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-61848-9
更新日期:2020-03-17 00:00:00
abstract::Nowadays, one of the main challenges is moving towards an eco-sustainable agriculture, able to preserve the food production through a reduced use of pesticides. Current global food sustenance by intensive agriculture is mainly based on economic crop monocultures and drastically reduces the biodiversity, increasing the...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-76247-3
更新日期:2020-11-05 00:00:00
abstract::Hepatocellular carcinoma (HCC) is not sensitive to radiotherapy and chemotherapy and experiences postoperative relapse extremely easy, which is the major cause of the high mortality rate. The Notch signaling pathway is expected to become a new target for the biological treatment of HCC. We searched databases for studi...
journal_title:Scientific reports
pub_type: 杂志文章,meta分析
doi:10.1038/s41598-017-14897-6
更新日期:2017-11-01 00:00:00
abstract::The nonbiodegradability nature of heavy metals renders them resident in food chain and subsequently, destructing the entire ecosystem. Therefore, this study aimed to employ nitrate reduction-driven calcium carbonate precipitation in remediation of lead and mercury aerobically and anaerobically by Proteus mirabilis 10B...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-60951-1
更新日期:2020-03-04 00:00:00
abstract::Genome-wide DNA methylation and gene expression are commonly altered in pediatric acute lymphoblastic leukemia (PALL). Integrated network analysis of cytosine methylation and expression datasets has the potential to provide deeper insights into the complex disease states and their causes than individual disconnected a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-58123-2
更新日期:2020-02-07 00:00:00
abstract::Polyelectrolyte-coated nanoparticles consisting of terbium and gadolinium complexes with calix[4]arene tetra-diketone ligand were first synthesized. The antenna effect of the ligand on Tb(III) green luminescence and the presence of water molecules in the coordination sphere of Gd(III) bring strong luminescent and magn...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep40486
更新日期:2017-01-16 00:00:00
abstract::This study utilized a Förster resonance energy transfer (FRET)-based molecular tension sensor and live cell imaging to evaluate the effect of osteocytes, a mechanosensitive bone cell, on the migratory behavior of tumor cells. Two cell lines derived from MDA-MB-231 breast cancer cells were transfected with the vinculin...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-42132-x
更新日期:2019-04-04 00:00:00
abstract::Energy transfer upconversion (ETU) is known to be the most efficient frequency upconversion mechanism. Surface plasmon can further enhance the upconversion process, opening doors to many applications. However, ETU is a complex process involving competing transitions between multiple energy levels and it has been diffi...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep18894
更新日期:2016-01-07 00:00:00
abstract::Erythropoiesis is regulated by the erythropoietin receptor (EpoR) binding to its ligand. The transmembrane domain (TMD) and the juxtamembrane (JM) regions of the EpoR are important for signal transduction across the cell membrane. We report a solution NMR study of the mouse erythropoietin receptor (mEpoR) comprising t...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep13586
更新日期:2015-08-28 00:00:00
abstract::Kmmig1 as a disrupted mutant of MIG1 encoding a regulator for glucose repression in Kluyveromyces marxianus exhibits a histidine-auxotrophic phenotype. Genome-wide expression analysis revealed that only HIS4 in seven HIS genes for histidine biosynthesis was down-regulated in Kmmig1. Consistently, introduction of HIS4 ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-46411-5
更新日期:2019-07-09 00:00:00
abstract::Deregulated IGF-1R-AKT signaling influences multiple nodes of cancer cell physiology and assists in migration, metastasis and acquirement of radio/chemoresistance. Enrichment of cancer stem cells (CSC) positively correlates with radio/chemoresistance development in various malignancies. It is unclear though, how IGF-1...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep36612
更新日期:2016-11-07 00:00:00
abstract::Atomic force microscope (AFM) based single molecule force spectroscopy (SMFS) and a quartz crystal microbalance (QCM) were respectively employed to probe interfacial characteristics of fibronectin fragment FNIII8-14 and full-length fibronectin (FN) on CH3-, OH-, COOH-, and NH2-terminated alkane-thiol self-assembled mo...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-72617-z
更新日期:2020-09-24 00:00:00
abstract::Solution-processed gate dielectrics were fabricated with the combined ZrO2 and Al2O3 (ZAO) in the form of mixed and stacked types for oxide thin film transistors (TFTs). ZAO thin films prepared with double coatings for solid gate dielectrics were characterized by analytical tools. For the first time, the capacitance o...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep33576
更新日期:2016-09-19 00:00:00
abstract::We provide an explicit model for a spin-1/2 quasi-particle, based on the superposition of plasmon excitations in a quantum plasmas with intrinsic orbital angular momentum. Such quasi-particle solutions can show remarkable similarities with single electrons moving in vacuum: they have spin-1/2, a finite rest mass, and ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-26196-9
更新日期:2018-05-18 00:00:00
abstract::Over-exploitation of groundwater and marked changes in climate over the years have imposed immense pressure on the global groundwater resources. As demand of potable water increases across the globe for human consumption, agriculture and industrial uses, the need to evaluate the groundwater potential and productivity ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-38567-x
更新日期:2019-02-14 00:00:00
abstract::Climate change and human activity are dooming species at an unprecedented rate via a plethora of direct and indirect, often synergic, mechanisms. Among these, primary extinctions driven by environmental change could be just the tip of an enormous extinction iceberg. As our understanding of the importance of ecological...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-35068-1
更新日期:2018-11-13 00:00:00
abstract::Low haemocompatibility of left ventricular assist devices (LVAD) surfaces necessitates anticoagulative therapy. Endothelial cell (EC) seeding can support haemocompatibility, however, the availability of autologous ECs is limited. In contrast, allogeneic ECs are readily available in sufficient quantity, but HLA dispari...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-47780-7
更新日期:2019-08-05 00:00:00