Abstract：
:A gram-negative bacterium, designated FJY1(T), was isolated from a soil sample obtained from a university campus in South Korea. Examination showed that FJY1(T) was red-pigmented, aerobic, motile, and composed of nonspore-forming rods. This strain grew in a temperature range of 15-37 °C and a pH range of 7-9. Based on 16S rRNA gene sequence similarity, strain FJY1(T) was most closely related to Rufibacter roseus H359(T) and Rufibacter tibetensis 1351(T), with sequence similarities of 95.98 and 95.46 %, respectively. Its major cellular fatty acids were iso-C15:0 (18.16 %) and summed feature 4 (C17:1 iso I and C17:1 anteiso B; 15.17 %). The DNA G+C content of FJY1(T) was 49.7 mol%; its predominant quinone was MK-7; and its major polar lipid was phosphatidylethanolamine. Phylogenetic analysis and analysis of its physiological and biochemical characteristics indicated that this isolate constituted a novel species, for which we propose the name Rufibacter soli sp. nov., with the type strain FJY1(T) (=KCTC 42815(T) = JCM 31024(T)).
journal_name
Curr Microbioljournal_title
Current microbiologyauthors
Jang JH,Lee D,Cha S,Lim S,Yang D,Seo Tdoi
10.1007/s00284-016-1105-xsubject
Has Abstractpub_date
2016-11-01 00:00:00pages
633-638issue
5eissn
0343-8651issn
1432-0991pii
10.1007/s00284-016-1105-xjournal_volume
73pub_type
杂志文章abstract：:A gene argH, encoding argininosuccinate lyase (ASL), has been cloned from a cosmid library of the filamentous cyanobacterium Nostoc sp. strain PCC 73102. The argH open reading frame encodes a protein comprised of 461 amino acids with a calculated molecular mass of 51,349 Da. Protein sequence comparisons reveal signifi...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s002840010298
更新日期：2001-10-01 00:00:00
abstract：:The outer membrane protein of Photobacterium damsela (OMP-PD) and the gene encoding for this porin protein were isolated and characterized. The deduced amino acid sequence of the OMP-PD monomer has 338 amino acids and a calculated molecular weight of 36,951 Da. This sequence includes a 22-amino acid signal peptide at ...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-003-4111-8
更新日期：2004-03-01 00:00:00
abstract：:A Gram-negative, mobile, rod-shaped, non-spore-forming bacterium (strain 14-3(T)) was isolated from a temporary pond in Antarctica. On the basis of 16S rRNA gene sequence similarity, strain 14-3(T) was shown to belong to the genus Pseudomonas sensu stricto. Physiological and biochemical tests supported the phylogeneti...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-009-9469-9
更新日期：2009-11-01 00:00:00
abstract：:We tested the hypothesis that supplementation with protein improves fermentation parameters without damaging the rumen microbial populations of beef cattle grazing Urochloa brizantha cv. Marandu during the dry season. Four rumen-cannulated Nellore bulls (571 ± 31 kg of body weight) were used in a 4 × 4 Latin square de...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-019-01631-w
更新日期：2019-03-01 00:00:00
abstract：:In the global perspective of antibiotic resistance, it is urgent to find potent topical antibiotics for the use in human and animal infection. Healing of equine wounds, particularly in the limbs, is difficult due to hydrostatic factors and exposure to environmental contaminants, which can lead to heavy bio-burden/biof...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-016-1080-2
更新日期：2016-10-01 00:00:00
abstract：:Early blight, caused by Alternaria solani, is one of the most devastating diseases of potato that causes severe yield loss worldwide. The infected potato debris existed in the soil serve as the initial infection sources for the next growing potato. Current identification of A. solani in soil relies primarily on cultur...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-017-1284-0
更新日期：2017-09-01 00:00:00
abstract：:Pseudomonas sp. OX1, an aromatic compound-degrading bacterium that was tentatively identified by conventional biochemical methods as P. stutzeri, has now been investigated at the molecular level to clarify its taxonomic position. Amplified ribosomal DNA restriction analysis and multiple enzyme restriction fragment len...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-005-0355-9
更新日期：2006-05-01 00:00:00
abstract：:The dinI homolog of S. marcescens was cloned from a plasmid library by virtue of its ability to inhibit nuclease expression from the S. marcescens nucA gene integrated in the genome of E. coli. The S. marcescens DinI protein is 68% identical to DinI of E. coli. It has a similar effect on other SOS regulated genes and ...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-001-0072-y
更新日期：2002-01-01 00:00:00
abstract：:Trioxacarcin A is a polyoxygenated, structurally complex antibiotic produced by Streptomyces spp., which possesses high anti-bacterial, anti-malaria, and anti-tumor activities. The trioxacarcin biosynthetic pathway involves type II polyketide synthases (PKSs) with L-isoleucine as a unique starter unit, as well as many...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-015-0868-9
更新日期：2015-10-01 00:00:00
abstract：:A screen of thermophilic lactic acid bacteria identified Streptococcus thermophilus strain ST110 as the putative producer of a bacteriocin with high level of activity against pediococci. Thermophilin 110 was isolated from culture supernatant after 16 h of growth and partially purified by a chloroform extraction proced...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-005-4540-7
更新日期：2005-09-01 00:00:00
abstract：:Mycoplasma penetrans invades HeLa cells and survives within them for prolonged periods of time. The intracellular distribution of M. penetrans within HeLa cells was studied utilizing the acidotropic dye LysoTracker (green), which permeates cell membranes and upon protonation remains trapped in acidic compartments. The...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-004-4298-3
更新日期：2004-08-01 00:00:00
abstract：:Salinity, a serious environmental pressure on crop production, might be counteracted by free-living and symbiotic inoculants entailing positive synergistic effects. Enhancement in nutrient uptake and/or production of antioxidants under the stress condition, can improve plant growth and yield. In this study, inoculatio...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-020-02034-y
更新日期：2020-09-01 00:00:00
abstract：:The diversities of soil bacterial communities in the Phragmites australis, Phalaris arundinacea, and non-plantation constructed wetlands were compared and analyzed by through high-throughput Illumina sequencing. At the phylum level, the ten dominant bacterial phyla in the three types of constructed wetlands were the s...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-019-01634-7
更新日期：2019-03-01 00:00:00
abstract：:Root colonization and diversity of arbuscular mycorrhizal fungi (AMF) were analyzed in plants growing in fly ash pond. Eight species could be separated morphologically, while phylogenetic analyses after PCR amplification of the ITS region followed by RFLP and sequencing revealed seven different AM fungal sequence type...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-011-9974-5
更新日期：2011-09-01 00:00:00
abstract：:This study genetically screened endophytic and epiphytic bacteria associated with ethnomedicinal plants for the presence of the non-ribosomal peptide synthetase (NRPS) gene and identified horizontal gene transfer (HGT) of the NRPS gene between the bacterial species. NRPSs are large multimodular enzymes that synthesize...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-015-0910-y
更新日期：2016-01-01 00:00:00
abstract：:A strain of Bacillus thuringiensis that showed significantly high toxicity to Plutella xylostella and Spodoptera exigua was isolated from a Korean soil sample and characterized. The isolate, named B. thuringiensis K1, was determined to belong to ssp. kurstaki (H3a3b3c) type by an H antisera agglutination test and prod...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-002-3755-0
更新日期：2002-10-01 00:00:00
abstract：:A new antagonistic Burkholderia strain, designated MP-1 and producing antifungal activities against various filamentous plant pathogenic fungi, was isolated from the rhizoshere in the Naju area. Cultural characteristic studies strongly suggested that this strain belongs to the genus Burkholderia. The nucleotide sequen...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-005-0333-2
更新日期：2006-11-01 00:00:00
abstract：:Marine subsurface sediments represent a novel archaeal biosphere with unknown physiology. To get to know the composition and ecological roles of the archaeal communities within the sediments of the Pearl River Estuary, Southern China, the diversity and vertical distribution of active archaea in a sediment core were ch...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-013-0320-y
更新日期：2013-07-01 00:00:00
abstract：:In the present study, probiotic, safety and functional characteristics of eight indigenous bifidobacterial isolates were compared to identify suitable strains for functional food application. Among the isolates, six strains of Bifidobacterium longum and one each of Bifidobacterium breve and Bifidobacterium bifidum wer...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-018-1615-9
更新日期：2019-03-01 00:00:00
abstract：:The complex gut microbiota plays a key role in host metabolism and health. However, the core microbial communities in the different aged Bactrian camels remain totally unclear. We used high-throughput 16S rRNA gene sequencing to examine the temporal variability of the fecal microbiota in Bactrian camels. At 2 months o...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-019-01689-6
更新日期：2019-07-01 00:00:00
abstract：:A Gram-stain-negative, rod-shaped bacterial strain JS15-10A1T was isolated from oil production water. Its optimum growth was observed at 37 °C, pH 7.0, and 3% (w/v) NaCl. The 16S rRNA gene sequence of strain JS15-10A1T showed the highest similarities with Pseudomonas parafulva CB-1T (97.6%) and P. fulva IAM 1529T (97....
journal_title：Current microbiology
pub_type： 杂志文章,评审
doi：10.1007/s00284-019-01798-2
更新日期：2020-04-01 00:00:00
abstract：:The cyclomaltodextrinase gene from Bacillus subtilis high-temperature growth transformant H-17 was cloned on separate PstI, BamHI, and EcoRI fragments into the plasmid vector pUC18, but was expressed in an inactive form in the host, Escherichia coli DH5 alpha. High level constitutive expression of the gene product was...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/BF01577379
更新日期：1993-04-01 00:00:00
abstract：:High yields (1939 U/ml) of an alkaline protease were obtained in batch fermentation of a Bacillus sp. using a response surface methodology. The interaction of four variables, viz., starch, peptone, incubation time, and inoculum density, suggested inoculum density to be an insignificant variable. However, incubation ti...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-001-0006-8
更新日期：2002-04-01 00:00:00
abstract：:Saccharomyces cerevisiae open reading frame (ORF) YGL029w (CGR1) encodes a small hydrophilic protein of unknown function. To investigate the role of this gene, we have determined the intracellular localization of the encoded product and examined the effects of Cgr1p depletion on cell growth. Tagging Cgr1p with the gre...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s002840010180
更新日期：2001-01-01 00:00:00
abstract：:Corynebacterium glutamicum, a Gram-positive soil bacterium belonging to the mycolic acids-containing actinomycetes, is able to use the lignin degradation products ferulate, vanillate, and protocatechuate as sole carbon sources. The gene cluster responsible for vanillate catabolism was identified and characterized. The...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-005-4531-8
更新日期：2005-07-01 00:00:00
abstract：:The 5' untranslated region and the orf1 sequence from the cry2Aa1 operon from Bacillus thuringiensis subsp. kurstaki NRD-12 were sequenced and compared to that from strain HD-1. The start codon described in HD-1 does not yield in NRD-12 a protein of the expected size of 20 kDa, but a 10-amino acid peptide. A second, h...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/pl00006828
更新日期：1999-07-01 00:00:00
abstract：:In this study, a lab-scale partial nitrifying sequencing batch reactor (SBR) was developed to investigate partial nitrification at ambient temperature (16-22 °C). Techniques of denaturing gradient gel electrophoresis (DGGE), cloning, and fluorescence in situ hybridization (FISH) were utilized simultaneously to study m...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-013-0317-6
更新日期：2013-06-01 00:00:00
abstract：:Although extensive information is available on the effect ultraviolet (UV) radiation has on Gram-negative marine bacteria, there is a scarcity of data concerning UV radiation and Gram-positive marine bacteria. The focus of this paper is on Microbacterium maritypicum, with the Gram-negative Vibrio natriegens being used...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-006-0349-2
更新日期：2007-07-01 00:00:00
abstract：:Zoospores of Chlamydomonas reinhardtii exhibit chemotaxis towards maltose, sucrose, xylose, mannitol, and ammonium. Ten independent mutants defective in chemotaxis towards sugars have been isolated. These mutants form five phenotypic classes. Genetic analysis of two mutant strains defective in chemotaxis to maltose (C...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s002849900063
更新日期：1996-06-01 00:00:00
abstract：:Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) displays important functional diversity in mammalian and plants. So far, however, studies on GAPDH have not included the halotolerant, unicellular green alga Dunaliella salina. In the present study, a GAPDH cDNA was cloned and sequenced from D. salina. It was 1394 bp lo...
journal_title：Current microbiology
pub_type： 杂志文章
doi：10.1007/s00284-008-9333-3
更新日期：2009-05-01 00:00:00
