Development of gene-based markers for use in construction of the chickpea (Cicer arietinum L.) genetic linkage map and identification of QTLs associated with seed weight and plant height.

Abstract:

:Seed weight and plant height are important agronomic traits and contribute to seed yield. The objective of this study was to identify QTLs underlying these traits using an intra-specific mapping population of chickpea. A F11 population of 177 recombinant inbred lines derived from a cross between SBD377 (100-seed weight--48 g and plant height--53 cm) and BGD112 (100-seed weight--15 g and plant height--65 cm) was used. A total of 367 novel EST-derived functional markers were developed which included 187 EST-SSRs, 130 potential intron polymorphisms (PIPs) and 50 expressed sequence tag polymorphisms (ESTPs). Along with these, 590 previously published markers including 385 EST-based markers and 205 genomic SSRs were utilized. Of the 957 markers tested for analysis of parental polymorphism between the two parents of the mapping population, 135 (14.64%) were found to be polymorphic. Of these, 131 polymorphic markers could be mapped to the 8 linkage groups. The linkage map had a total length of 1140.54 cM with an average marker density of 8.7 cM. The map was further used for QTL identification using composite interval mapping method (CIM). Two QTLs each for seed weight, qSW-1 and qSW-2 (explaining 11.54 and 19.24% of phenotypic variance, respectively) and plant height, qPH-1 and qPH-2 (explaining 13.98 and 12.17% of phenotypic variance, respectively) were detected. The novel set of genic markers, the intra-specific linkage map and the QTLs identified in the present study will serve as valuable genomic resources in improving the chickpea seed yield using marker-assisted selection (MAS) strategies.

journal_name

Mol Biol Rep

authors

Gupta S,Kumar T,Verma S,Bharadwaj C,Bhatia S

doi

10.1007/s11033-015-3925-3

subject

Has Abstract

pub_date

2015-11-01 00:00:00

pages

1571-80

issue

11

eissn

0301-4851

issn

1573-4978

pii

10.1007/s11033-015-3925-3

journal_volume

42

pub_type

杂志文章
  • Improved protocols for BAC insert DNA isolation, BAC end sequencing and FISH for construction of BAC based physical map of genes on the chromosomes.

    abstract::Bacterial artificial chromosome (BAC) library is an important genomic resource useful in targeted marker development, positional cloning, physical mapping and a substrate for genome sequencing for better understanding the genome organization of a species. The present manuscript elucidates the improvement in protocols ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05283-z

    authors: Kumar R,Baisvar VS,Kushwaha B,Murali S,Singh VK

    更新日期:2020-03-01 00:00:00

  • Optimizing mechanical stretching protocols for hypertrophic and anti-apoptotic responses in cardiomyocyte-like H9C2 cells.

    abstract::Cardiomyocytes possess the ability to respond to mechanical stimuli by reprogramming their gene expression. This study investigated the effects of different loading protocols on signaling and expression responses of myogenic, anabolic, inflammatory, atrophy and pro-apoptotic genes in cardiomyocyte-like H9C2 cells. Dif...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-06112-z

    authors: Zevolis E,Philippou A,Moustogiannis A,Chatzigeorgiou A,Koutsilieris M

    更新日期:2021-01-04 00:00:00

  • Temporal gene expression analysis of Sjögren's syndrome in C57BL/6.NOD-Aec1Aec2 mice based on microarray time-series data using an improved empirical Bayes approach.

    abstract::The purpose of this study was to analyze the temporal gene expression in salivary and lacrimal glands of Sjögren's syndrome (SS) based on time-series microarray data. We downloaded gene expression data GSE15640 and GSE48139 from gene expression omnibus and identified differentially expressed genes (DEGs) at varying ti...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3471-4

    authors: Wang D,Xue L,Yang Y,Hu J,Li G,Piao X

    更新日期:2014-09-01 00:00:00

  • Association study of leukocyte telomere length and genetic polymorphism within hTERT promoter with type 2 diabetes in Bangladeshi population.

    abstract::Telomeres are protective cap on the ends of DNA of non-coding tandem repeats of TTAGGG. Human telomerase reverse transcriptase (hTERT) is a catalytic subunit of telomerase that maintains the structure of telomeres. Type 2 diabetes (T2D) affects multi-organ and telomere length by altering telomerase activity. We aimed ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-06045-7

    authors: Goswami A,Huda N,Yasmin T,Hosen MI,Hasan AKMM,Nabi AHMN

    更新日期:2021-01-03 00:00:00

  • Molecular characterization and expression analysis of beta2-microglobulin in large yellow croaker Pseudosciaena crocea.

    abstract::Beta(2)-microglobulin (beta(2)m), a protein necessary for proper folding, peptide binding, and surface display of class I antigens plays an important role in immune response. The full-length cDNA containing beta(2)m was cloned from the spleen cDNA library of large yellow croaker Pseudosciaena crocea (Pscr-beta ( 2 ) m...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-008-9373-6

    authors: Yu S,Chen X,Ao J

    更新日期:2009-09-01 00:00:00

  • Identification and expression of C2H2 transcription factor genes in Carica papaya under abiotic and biotic stresses.

    abstract::C2H2 proteins belong to a group of transcription factors (TFs) existing as a superfamily that plays important roles in defense responses and various other physiological processes in plants. The present study aimed to screen for and identify C2H2 proteins associated with defense responses to abiotic and biotic stresses...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-012-1542-y

    authors: Jiang L,Pan LJ

    更新日期:2012-06-01 00:00:00

  • CTLA-4 exon 1 +49 polymorphism alone and in a haplotype with -318 promoter polymorphism may confer susceptibility to chronic HBV infection in Chinese Han patients.

    abstract::Cytotoxic T-lymphocyte-associated antigen 4 (CTLA-4) plays a pivotal role in regulating T cell activation, which is believably critical for the outcome of hepatitis B virus (HBV) infection. The expression and function of CTLA-4 may be affected by gene polymorphisms. This study investigated the influence of CTLA-4 poly...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-010-0660-7

    authors: Duan S,Zhang G,Han Q,Li Z,Liu Z,Chen J,Lv Y,Li N,Wang Y,Li M,Lou S,Yang M,Zhu Q,Xing F

    更新日期:2011-11-01 00:00:00

  • MMP-2, TNF-α and NLRP1 polymorphisms in Chinese patients with ankylosing spondylitis and rheumatoid arthritis.

    abstract::Rheumatoid arthritis (RA) and ankylosing spondylitis (AS) are autoimmune, inflammatory diseases with substantial genetic contributions. Matrix metalloproteinase (MMP)-2, tumor necrosis factor (TNF)-α and NLR family pyrin domain-containing 1 (NLRP1) play important roles in the immune response. We studied the MMP-2 rs24...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-013-2743-8

    authors: Sun R,Huang Y,Zhang H,Liu R

    更新日期:2013-11-01 00:00:00

  • Complete sequence and gene organization of the mitochondrial genome of Siamensis Crocodile (Crocodylus siamensis).

    abstract::The complete sequence of mitochondrial genome of Siamensis Crocodile (Crocodylus siamensis) is determined by using PCR amplification, clone and primer-walking sequencing methods. The genome is 16836 bp in size, containing 13 protein-coding, 2 ribosomal and 22 transfer RNA genes. The mtDNA genome of Siamensis Crocodile...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-007-9062-x

    authors: Ji X,Wu X,Yan P,Amato G

    更新日期:2008-06-01 00:00:00

  • A homozygous nonsense variant in DYM underlies Dyggve-Melchior-Clausen syndrome associated with ectodermal features.

    abstract::Dyggve melchior clausen syndrome (DMC, MIM 223800) is a very rare autosomal recessive form of skeletal dysplasia associated with various degrees of mental retardation. It is characterized by a progressive spondyloepimetaphyseal dysplasia (SEMD) with disproportionate short stature, generalized platyspondyly and lacy il...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05774-z

    authors: Abdullah,Shah PW,Nawaz S,Hussain S,Ullah A,Basit S,Ahmad W

    更新日期:2020-09-01 00:00:00

  • The effects of simvastatin on angiogenesis: studied by an original model of atherosclerosis and acute myocardial infarction in rabbit.

    abstract::Statins have shown pleiotropic effects, many of them independent of their impact on lipids. Angiogenesis can be beneficial in the acute myocardial infarction to improve circulation. However, it also can be harmful due to worsening of atherosclerosis. Here, we established a new minimal invasive rabbit model to study is...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-010-0497-0

    authors: Shen W,Shi HM,Fan WH,Luo XP,Jin B,Li Y

    更新日期:2011-08-01 00:00:00

  • Dissociability of free and peptidyl-tRNA bound ribosomes.

    abstract::The influence of peptidyl-tRNA on the dissociation of yeast 80 S ribosomes into subunits was studied. For this purpose temperature-sensitive (ts) suppressor strain of yeast Saccharomyces cervisiae carrying a defect in peptide chain termination was used. It was found that peptidyl-tRNA did not influence the dissociatio...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/BF00775964

    authors: Surguchov AP,Fominykch ES,Lyzlova LV

    更新日期:1978-06-16 00:00:00

  • Increase of mtDNA number and its mutant copies in rat brain after exposure to 150 MeV protons.

    abstract::Proton beam therapy is widely used for treating brain tumor. Despite the efficacy of treatment, the use of this therapy has met some limitations associated with possible damage to normal brain tissues located beyond the tumor site. In this context, the exploration of the harmful effects of protons on the normal brain ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05491-7

    authors: Abdullaev S,Bulanova T,Timoshenko G,Gaziev AI

    更新日期:2020-06-01 00:00:00

  • N-(1-Pyrenyl) maleimide inhibits telomerase activity in a cell free system and induces apoptosis in Jurkat cells.

    abstract::Telomerase activity is repressed in normal human somatic cells, but is activated in most cancers, suggesting that telomerase may be an important target for cancer therapy. Agents that interact selectively with telomerase are anticipated to exert specific action on cancer cells. In this study, we evaluated maleimide de...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-012-1757-y

    authors: Huang PR,Yeh YM,Pao CC,Chen CY,Wang TC

    更新日期:2012-09-01 00:00:00

  • An insight on Drosophila myogenesis and its assessment techniques.

    abstract::Movement assisted by muscles forms the basis of various behavioural traits seen in Drosophila. Myogenesis involves developmental processes like cellular specification, differentiation, migration, fusion, adherence to tendons and neuronal innervation in a series of coordinated event well defined in body space and time....

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/s11033-020-06006-0

    authors: Dubey M,Ain U,Firdaus H

    更新日期:2020-12-01 00:00:00

  • A novel missense (A79V) mutation of goat PROP1 gene and its association with production traits.

    abstract::As a paired class homeodomain transcription factor, mutations of PROP1 (Prophet of POU1F1) are responsible for deficiencies of GH, PRL, TSH, LH and FSH. Regarding mutations of GH, PRL, and POU1F1 genes significantly associating with different production traits, PROP1 gene is a novel important candidate gene for detect...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-008-9418-x

    authors: Lan X,Pan C,Zhang L,Zhao M,Zhang C,Lei C,Chen H

    更新日期:2009-11-01 00:00:00

  • Promoter methylation and expression of intercellular adhesion molecule 1 gene in blood of autoimmune thyroiditis patients.

    abstract::Growing data supported that epigenetic modifications, including altered DNA methylation have a potential role in the pathogenesis of autoimmune thyroid diseases (AITD). In the present study we aimed to investigate the methylation status of ICAM-1 gene promoter in patients with AITD. Forty patients with Graves' disease...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-019-04990-6

    authors: Shalaby SM,Mackawy AMH,Atef DM,Atef RM,Saeed J

    更新日期:2019-10-01 00:00:00

  • Quantitative expression of microRNAs in Brassica oleracea infected with Xanthomonas campestris pv. campestris.

    abstract::Brassica oleracea var. capitata (cabbage) is an economically important crop affected by black rot disease caused by Xanthomonas campestris pv. campestris (Xcc). MicroRNAs (miRNAs) play an important role in plant defense modulation and therefore the analysis of these molecules can help better understand plant-pathogen ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-019-04779-7

    authors: Santos LS,Maximiano MR,Megias E,Pappas M,Ribeiro SG,Mehta A

    更新日期:2019-06-01 00:00:00

  • The drug-transporter gene MDR1 C3435T and G2677T/A polymorphisms and the risk of multidrug-resistant epilepsy in Turkish children.

    abstract::One-third of all individuals with epilepsy are resistant to antiepileptic drug (AED) treatment. Antiepileptic treatment response has been suggested to be modulated by genetic polymorphisms of drug efflux transporters. Several polymorphic variants within the multidrug resistance 1 (MDR1) gene, which encodes the major t...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-013-2866-y

    authors: Seven M,Batar B,Unal S,Yesil G,Yuksel A,Guven M

    更新日期:2014-01-01 00:00:00

  • Investigation of the interaction between CREB-binding protein and STAT4/STAT6.

    abstract::Coactivator CBP (CREB-binding protein) has been implicated in the regulation of transcription for all signal transducer and activator of transcription factors (STATs); however, the mechanism remains unclear. Using yeast two-hybrid screening and immunoprecipitation techniques, we investigated the direct interaction of ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-010-0622-0

    authors: Zhang M,Fu Z,Tian D,Liu E,Dai J,Wang L

    更新日期:2011-10-01 00:00:00

  • microRNA 338-3p exhibits tumor suppressor role and its down-regulation is associated with adverse clinical outcome in prostate cancer patients.

    abstract::MicroRNAs (miRNAs) are small non-coding RNAs that function in transcriptional and post-transcriptional regulation of gene expression. Several miRNAs have been implicated in regulating prostate cancer (PCa) progression. Deregulations of miRNA regulatory networks have been reported in ERG positive PCa, which accounts fo...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-016-3948-4

    authors: Bakkar A,Alshalalfa M,Petersen LF,Abou-Ouf H,Al-Mami A,Hegazy SA,Feng F,Alhajj R,Bijian K,Alaoui-Jamali MA,Bismar TA

    更新日期:2016-04-01 00:00:00

  • Identification and characterization of two chrysanthemum (Dendronthema x moriforlium) DREB genes, belonging to the AP2/EREBP family.

    abstract::Two DREB-like genes, designated as DmDREBa and DmDREBb, were isolated from chrysanthemum by RACE approach. The DmDREBa and DmDREBb genes encoded proteins of 191 and 185 amino acid residues with the predicted molecular mass of 21.66 and 20.99 kDa, respectively. Both DmDREBs proteins comprised a typical EREBP/AP2 domain...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-007-9153-8

    authors: Yang Y,Wu J,Zhu K,Liu L,Chen F,Yu D

    更新日期:2009-01-01 00:00:00

  • Cloning and characterization of β-catenin gene in early embryonic developmental stage of Artemia sinica.

    abstract::β-Catenin plays a crucial role in embryonic development and responds to the activation of several signal transduction pathways. In this paper, in order to understand the functions of β-catenin gene in early embryonic development of Artemia sinica, the complete cDNA sequence was cloned for the first time using RACE tec...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-011-0788-0

    authors: Li X,Hou L,Ma J,Liu Y,Zheng L,Zou X

    更新日期:2012-01-01 00:00:00

  • Characterization of a novel human CDK5 splicing variant that inhibits Wnt/beta-catenin signaling.

    abstract::The cyclin-dependent kinases (CDKs) are a family of serine/threonine kinases, playing an essential role in regulating cell-cycle progression. In our present work, human CDK5 and a novel CDK5 splicing variant, named as CDK5-SV, were cloned from the cDNA library of human testis. CDK5-SV lacking the exon 7 of CDK5 encode...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-009-9752-7

    authors: Li Q,Liu X,Zhang M,Ye G,Qiao Q,Ling Y,Wu Y,Zhang Y,Yu L

    更新日期:2010-06-01 00:00:00

  • Overexpression of Ran gene from Lepidium latifolium L. (LlaRan) renders transgenic tobacco plants hypersensitive to cold stress.

    abstract::Ran is a multifunctional small GTPase involved in important cellular activities like nucleocytoplasmic transport, mitotic spindle assembly, nuclear envelope formation, etc., but is also known to be differentially expressed in response to abiotic stress, particularly low temperature. We have over-expressed Lepidium lat...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3476-z

    authors: Sinha VB,Grover A,Singh S,Pande V,Ahmed Z

    更新日期:2014-09-01 00:00:00

  • Towards an understanding of wheat chloroplasts: a methodical investigation of thylakoid proteome.

    abstract::We utilized Percoll density gradient centrifugation to isolate and fractionate chloroplasts of Korean winter wheat cultivar cv. Kumgang (Triticum aestivum L.). The resulting protein fractions were separated by one dimensional polyacrylamide gel electrophoresis (1D-PAGE) coupled with LTQ-FTICR mass spectrometry. This e...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-011-1302-4

    authors: Kamal AH,Cho K,Komatsu S,Uozumi N,Choi JS,Woo SH

    更新日期:2012-05-01 00:00:00

  • Modeling response of glycolysis in S. cerevisiae cells harvested at diauxic shift.

    abstract::The response of glycolysis to exposure of glucose in non-growing S. cerevisiae cells from diauxic shift was monitored. The result was compared to a kinetic model of glycolysis with branches to glycogen, trehalose, glycerol, and succinate. Experimental data at steady-state concentrations of metabolites in the upper par...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1023/a:1020349023158

    authors: Albers E,Bakker BM,Gustafsson L

    更新日期:2002-01-01 00:00:00

  • Ebselen, a promising antioxidant drug: mechanisms of action and targets of biological pathways.

    abstract::Ebselen, an organoselenium compound, mimics glutathione peroxidase activity. It is a multifunctional compound, which catalyzes several essential reactions for the protection of cellular components from oxidative and free radical damage. Based on a number of in vitro and in vivo studies, various mechanisms are proposed...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/s11033-014-3417-x

    authors: Azad GK,Tomar RS

    更新日期:2014-08-01 00:00:00

  • The effect of chemical carcinogenesis on rat glutathione S-transferase P1 gene transcriptional regulation.

    abstract::To investigate mechanisms of rat glutathione S-transferase P1 gene (rGSTP1) expression regulation during chemical carcinogenesis. we studied enhancer elements located in the region between -2.5 kb to -2.2 kb. The region was upstream from the start site of transcription and was divided into two major fragments, GPEI an...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1023/a:1011993604051

    authors: Liu D,Liao M,Zuo J,Henner WD,Fan F

    更新日期:2001-03-01 00:00:00

  • CXCL12 and TP53 genetic polymorphisms as markers of susceptibility in a Brazilian children population with acute lymphoblastic leukemia (ALL).

    abstract::Acute lymphoblastic leukemia (ALL) is the most common pediatric malignancy. Genetic polymorphisms in the 3'UTR region of the CXCL12 (rs1801157) and TP53 codon 72 (rs1042522) genes may contribute to susceptibility to childhood ALL because they affect some important processes, such as metastasis regulation and tumor sup...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-013-2551-1

    authors: de Lourdes Perim A,Guembarovski RL,Oda JM,Lopes LF,Ariza CB,Amarante MK,Fungaro MH,de Oliveira KB,Watanabe MA

    更新日期:2013-07-01 00:00:00