DNA barcoding reveals diverse growth kinetics of human breast tumour subclones in serially passaged xenografts.

Abstract:

:Genomic and phenotypic analyses indicate extensive intra- as well as intertumoral heterogeneity in primary human malignant cell populations despite their clonal origin. Cellular DNA barcoding offers a powerful and unbiased alternative to track the number and size of multiple subclones within a single human tumour xenograft and their response to continued in vivo passaging. Using this approach we find clone-initiating cell frequencies that vary from ~1/10 to ~1/10,000 cells transplanted for two human breast cancer cell lines and breast cancer xenografts derived from three different patients. For the cell lines, these frequencies are negatively affected in transplants of more than 20,000 cells. Serial transplants reveal five clonal growth patterns (unchanging, expanding, diminishing, fluctuating or of delayed onset), whose predominance is highly variable both between and within original samples. This study thus demonstrates the high growth potential and diverse growth properties of xenografted human breast cancer cells.

journal_name

Nat Commun

journal_title

Nature communications

authors

Nguyen LV,Cox CL,Eirew P,Knapp DJ,Pellacani D,Kannan N,Carles A,Moksa M,Balani S,Shah S,Hirst M,Aparicio S,Eaves CJ

doi

10.1038/ncomms6871

subject

Has Abstract

pub_date

2014-12-23 00:00:00

pages

5871

issn

2041-1723

pii

ncomms6871

journal_volume

5

pub_type

杂志文章
  • Macromolecular-clustered facial amphiphilic antimicrobials.

    abstract::Bacterial infections and antibiotic resistance, particularly by Gram-negative pathogens, have become a global healthcare crisis. We report the design of a class of cationic antimicrobial polymers that cluster local facial amphiphilicity from repeating units to enhance interactions with bacterial membranes without requ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07651-7

    authors: Rahman MA,Bam M,Luat E,Jui MS,Ganewatta MS,Shokfai T,Nagarkatti M,Decho AW,Tang C

    更新日期:2018-12-07 00:00:00

  • Highly stable QLEDs with improved hole injection via quantum dot structure tailoring.

    abstract::For the state-of-the-art quantum dot light-emitting diodes, while the ZnO nanoparticle layers can provide effective electron injections into quantum dots layers, the hole transporting materials usually cannot guarantee sufficient hole injection owing to the deep valence band of quantum dots. Developing proper hole tra...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04986-z

    authors: Cao W,Xiang C,Yang Y,Chen Q,Chen L,Yan X,Qian L

    更新日期:2018-07-04 00:00:00

  • Impact-induced changes in source depth and volume of magmatism on Mercury and their observational signatures.

    abstract::Mercury's crust is mostly the result of partial melting in the mantle associated with solid-state convection. Large impacts induce additional melting by generating subsurface thermal anomalies. By numerically investigating the geodynamical effects of impacts, here we show that impact-generated thermal anomalies intera...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01692-0

    authors: Padovan S,Tosi N,Plesa AC,Ruedas T

    更新日期:2017-12-05 00:00:00

  • Dynamic alterations in decoy VEGF receptor-1 stability regulate angiogenesis.

    abstract::Blood vessel expansion is driven by sprouting angiogenesis of endothelial cells, and is essential for development, wound healing and disease. Membrane-localized vascular endothelial growth factor receptor-1 (mVEGFR1) is an endothelial cell-intrinsic decoy receptor that negatively modulates blood vessel morphogenesis. ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15699

    authors: Boucher JM,Clark RP,Chong DC,Citrin KM,Wylie LA,Bautch VL

    更新日期:2017-06-07 00:00:00

  • Frustrated supercritical collapse in tunable charge arrays on graphene.

    abstract::The photon-like behavior of electrons in graphene causes unusual confinement properties that depend strongly on the geometry and strength of the surrounding potential. We report bottom-up synthesis of atomically-precise one-dimensional (1D) arrays of point charges on graphene that allow exploration of a new type of su...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-08371-2

    authors: Lu J,Tsai HZ,Tatan AN,Wickenburg S,Omrani AA,Wong D,Riss A,Piatti E,Watanabe K,Taniguchi T,Zettl A,Pereira VM,Crommie MF

    更新日期:2019-01-29 00:00:00

  • Guided post-acceleration of laser-driven ions by a miniature modular structure.

    abstract::All-optical approaches to particle acceleration are currently attracting a significant research effort internationally. Although characterized by exceptional transverse and longitudinal emittance, laser-driven ion beams currently have limitations in terms of peak ion energy, bandwidth of the energy spectrum and beam d...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10792

    authors: Kar S,Ahmed H,Prasad R,Cerchez M,Brauckmann S,Aurand B,Cantono G,Hadjisolomou P,Lewis CL,Macchi A,Nersisyan G,Robinson AP,Schroer AM,Swantusch M,Zepf M,Willi O,Borghesi M

    更新日期:2016-04-18 00:00:00

  • Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel.

    abstract::Imputing genotypes from reference panels created by whole-genome sequencing (WGS) provides a cost-effective strategy for augmenting the single-nucleotide polymorphism (SNP) content of genome-wide arrays. The UK10K Cohorts project has generated a data set of 3,781 whole genomes sequenced at low depth (average 7x), aimi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9111

    authors: Huang J,Howie B,McCarthy S,Memari Y,Walter K,Min JL,Danecek P,Malerba G,Trabetti E,Zheng HF,UK10K Consortium.,Gambaro G,Richards JB,Durbin R,Timpson NJ,Marchini J,Soranzo N

    更新日期:2015-09-14 00:00:00

  • Circadian control of lung inflammation in influenza infection.

    abstract::Influenza is a leading cause of respiratory mortality and morbidity. While inflammation is essential for fighting infection, a balance of anti-viral defense and host tolerance is necessary for recovery. Circadian rhythms have been shown to modulate inflammation. However, the importance of diurnal variability in the ti...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11400-9

    authors: Sengupta S,Tang SY,Devine JC,Anderson ST,Nayak S,Zhang SL,Valenzuela A,Fisher DG,Grant GR,López CB,FitzGerald GA

    更新日期:2019-09-11 00:00:00

  • Critical roles of nardilysin in the maintenance of body temperature homoeostasis.

    abstract::Body temperature homoeostasis in mammals is governed centrally through the regulation of shivering and non-shivering thermogenesis and cutaneous vasomotion. Non-shivering thermogenesis in brown adipose tissue (BAT) is mediated by sympathetic activation, followed by PGC-1α induction, which drives UCP1. Here we identify...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4224

    authors: Hiraoka Y,Matsuoka T,Ohno M,Nakamura K,Saijo S,Matsumura S,Nishi K,Sakamoto J,Chen PM,Inoue K,Fushiki T,Kita T,Kimura T,Nishi E

    更新日期:2014-01-01 00:00:00

  • Circadian rhythms in Mexican blind cavefish Astyanax mexicanus in the lab and in the field.

    abstract::Biological clocks have evolved as an adaptation to life on a rhythmic planet, synchronising physiological processes to the environmental light-dark cycle. Here we examine circadian clock function in Mexican blind cavefish Astyanax mexicanus and its surface counterpart. In the lab, adult surface fish show robust circad...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3769

    authors: Beale A,Guibal C,Tamai TK,Klotz L,Cowen S,Peyric E,Reynoso VH,Yamamoto Y,Whitmore D

    更新日期:2013-01-01 00:00:00

  • Ranking of non-coding pathogenic variants and putative essential regions of the human genome.

    abstract::A gene is considered essential if loss of function results in loss of viability, fitness or in disease. This concept is well established for coding genes; however, non-coding regions are thought less likely to be determinants of critical functions. Here we train a machine learning model using functional, mutational an...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13212-3

    authors: Wells A,Heckerman D,Torkamani A,Yin L,Sebat J,Ren B,Telenti A,di Iulio J

    更新日期:2019-11-20 00:00:00

  • A gatekeeper helix determines the substrate specificity of Sjögren-Larsson Syndrome enzyme fatty aldehyde dehydrogenase.

    abstract::Mutations in the gene coding for membrane-bound fatty aldehyde dehydrogenase (FALDH) lead to toxic accumulation of lipid species and development of the Sjögren-Larsson Syndrome (SLS), a rare disorder characterized by skin defects and mental retardation. Here, we present the crystallographic structure of human FALDH, t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5439

    authors: Keller MA,Zander U,Fuchs JE,Kreutz C,Watschinger K,Mueller T,Golderer G,Liedl KR,Ralser M,Kräutler B,Werner ER,Marquez JA

    更新日期:2014-07-22 00:00:00

  • Isolation of diborenes and their 90°-twisted diradical congeners.

    abstract::Molecules containing multiple bonds between atoms-most often in the form of olefins-are ubiquitous in nature, commerce, and science, and as such have a huge impact on everyday life. Given their prominence, over the last few decades, frequent attempts have been made to perturb the structure and reactivity of multiply-b...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-02998-3

    authors: Böhnke J,Dellermann T,Celik MA,Krummenacher I,Dewhurst RD,Demeshko S,Ewing WC,Hammond K,Heß M,Bill E,Welz E,Röhr MIS,Mitrić R,Engels B,Meyer F,Braunschweig H

    更新日期:2018-03-22 00:00:00

  • Laminin regulates PDGFRβ(+) cell stemness and muscle development.

    abstract::Muscle-resident PDGFRβ(+) cells, which include pericytes and PW1(+) interstitial cells (PICs), play a dual role in muscular dystrophy. They can either undergo myogenesis to promote muscle regeneration or differentiate into adipocytes and other cells to compromise regeneration. How the differentiation and fate determin...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11415

    authors: Yao Y,Norris EH,Mason CE,Strickland S

    更新日期:2016-05-03 00:00:00

  • Limits to growth of forest biomass carbon sink under climate change.

    abstract::Widely recognized as a significant carbon sink, North American forests have experienced a history of recovery and are facing an uncertain future. This growing carbon sink is dictated by recovery from land-use change, with growth trajectory modified by environmental change. To address both processes, we compiled a fore...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05132-5

    authors: Zhu K,Zhang J,Niu S,Chu C,Luo Y

    更新日期:2018-07-13 00:00:00

  • Telomere damage induces internal loops that generate telomeric circles.

    abstract::Extrachromosomal telomeric circles are commonly invoked as important players in telomere maintenance, but their origin has remained elusive. Using electron microscopy analysis on purified telomeres we show that, apart from known structures, telomeric repeats accumulate internal loops (i-loops) that occur in the proxim...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19139-4

    authors: Mazzucco G,Huda A,Galli M,Piccini D,Giannattasio M,Pessina F,Doksani Y

    更新日期:2020-10-20 00:00:00

  • Dual regulation of cytoplasmic and mitochondrial acetyl-CoA utilization for improved isoprene production in Saccharomyces cerevisiae.

    abstract::Microbial production of isoprene from renewable feedstock is a promising alternative to traditional petroleum-based processes. Currently, efforts to improve isoprenoid production in Saccharomyces cerevisiae mainly focus on cytoplasmic engineering, whereas comprehensive engineering of multiple subcellular compartments ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12851

    authors: Lv X,Wang F,Zhou P,Ye L,Xie W,Xu H,Yu H

    更新日期:2016-09-21 00:00:00

  • Double thermoelectric power factor of a 2D electron system.

    abstract::Two-dimensional electron systems have attracted attention as thermoelectric materials, which can directly convert waste heat into electricity. It has been theoretically predicted that thermoelectric power factor can be largely enhanced when the two-dimensional electron layer is far narrower than the de Broglie wavelen...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04660-4

    authors: Zhang Y,Feng B,Hayashi H,Chang CP,Sheu YM,Tanaka I,Ikuhara Y,Ohta H

    更新日期:2018-06-20 00:00:00

  • Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.

    abstract::Lean body mass, consisting mostly of skeletal muscle, is important for healthy aging. We performed a genome-wide association study for whole body (20 cohorts of European ancestry with n = 38,292) and appendicular (arms and legs) lean body mass (n = 28,330) measured using dual energy X-ray absorptiometry or bioelectric...

    journal_title:Nature communications

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41467-017-00031-7

    authors: Zillikens MC,Demissie S,Hsu YH,Yerges-Armstrong LM,Chou WC,Stolk L,Livshits G,Broer L,Johnson T,Koller DL,Kutalik Z,Luan J,Malkin I,Ried JS,Smith AV,Thorleifsson G,Vandenput L,Hua Zhao J,Zhang W,Aghdassi A,Åkesson

    更新日期:2017-07-19 00:00:00

  • scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.

    abstract::Parallel single-cell sequencing protocols represent powerful methods for investigating regulatory relationships, including epigenome-transcriptome interactions. Here, we report a single-cell method for parallel chromatin accessibility, DNA methylation and transcriptome profiling. scNMT-seq (single-cell nucleosome, met...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03149-4

    authors: Clark SJ,Argelaguet R,Kapourani CA,Stubbs TM,Lee HJ,Alda-Catalinas C,Krueger F,Sanguinetti G,Kelsey G,Marioni JC,Stegle O,Reik W

    更新日期:2018-02-22 00:00:00

  • CORE GREML for estimating covariance between random effects in linear mixed models for complex trait analyses.

    abstract::As a key variance partitioning tool, linear mixed models (LMMs) using genome-based restricted maximum likelihood (GREML) allow both fixed and random effects. Classic LMMs assume independence between random effects, which can be violated, causing bias. Here we introduce a generalized GREML, named CORE GREML, that expli...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18085-5

    authors: Zhou X,Im HK,Lee SH

    更新日期:2020-08-21 00:00:00

  • Endocrine disruptors induce perturbations in endoplasmic reticulum and mitochondria of human pluripotent stem cell derivatives.

    abstract::Persistent exposure to man-made endocrine disrupting chemicals during fetal endocrine development may lead to disruption of metabolic homeostasis contributing to childhood obesity. Limited cellular platforms exist to test endocrine disrupting chemical-induced developmental abnormalities in human endocrine tissues. Her...

    journal_title:Nature communications

    pub_type: 杂志文章,收录出版

    doi:10.1038/s41467-017-00254-8

    authors: Rajamani U,Gross AR,Ocampo C,Andres AM,Gottlieb RA,Sareen D

    更新日期:2017-08-09 00:00:00

  • Effectors of animal and plant pathogens use a common domain to bind host phosphoinositides.

    abstract::Bacterial Type III Secretion Systems deliver effectors into host cells to manipulate cellular processes to the advantage of the pathogen. Many host targets of these effectors are found on membranes. Therefore, to identify their targets, effectors often use specialized membrane-localization domains to localize to appro...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3973

    authors: Salomon D,Guo Y,Kinch LN,Grishin NV,Gardner KH,Orth K

    更新日期:2013-01-01 00:00:00

  • A broadly tunable synthesis of linear α-olefins.

    abstract::The catalytic synthesis of linear α-olefins from ethylene is a technologically highly important reaction. A synthesis concept allowing the formation of selective products and various linear α-olefin product distributions with one catalyst system is highly desirable. Here, we describe a trimetallic catalyst system (Y-A...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01507-2

    authors: Gollwitzer A,Dietel T,Kretschmer WP,Kempe R

    更新日期:2017-10-31 00:00:00

  • Demonstration of a positron beam-driven hollow channel plasma wakefield accelerator.

    abstract::Plasma wakefield accelerators have been used to accelerate electron and positron particle beams with gradients that are orders of magnitude larger than those achieved in conventional accelerators. In addition to being accelerated by the plasma wakefield, the beam particles also experience strong transverse forces that...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11785

    authors: Gessner S,Adli E,Allen JM,An W,Clarke CI,Clayton CE,Corde S,Delahaye JP,Frederico J,Green SZ,Hast C,Hogan MJ,Joshi C,Lindstrøm CA,Lipkowitz N,Litos M,Lu W,Marsh KA,Mori WB,O'Shea B,Vafaei-Najafabadi N,Walz D,Y

    更新日期:2016-06-02 00:00:00

  • EPR-aided approach for solution structure determination of large RNAs or protein-RNA complexes.

    abstract::High-resolution structural information on RNA and its functionally important complexes with proteins is dramatically underrepresented compared with proteins but is urgently needed for understanding cellular processes at the molecular and atomic level. Here we present an EPR-based protocol to help solving large RNA and...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4669

    authors: Duss O,Yulikov M,Jeschke G,Allain FH

    更新日期:2014-05-14 00:00:00

  • Probing complex geophysical geometries with chattering dust.

    abstract::The modern energy economy and environmental infrastructure rely on the flow of fluids through fractures in rock. Yet this flow cannot be imaged directly because rocks are opaque to most probes. Here we apply chattering dust, or chemically reactive grains of sucrose containing pockets of pressurized carbon dioxide, to ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19087-z

    authors: Pyrak-Nolte LJ,Braverman W,Nolte NJ,Wright AJ,Nolte DD

    更新日期:2020-10-19 00:00:00

  • Aqueous multiphoton lithography with multifunctional silk-centred bio-resists.

    abstract::Silk and silk fibroin, the biomaterial from nature, nowadays are being widely utilized in many cutting-edge micro/nanodevices/systems via advanced micro/nanofabrication techniques. Herein, for the first time to our knowledge, we report aqueous multiphoton lithography of diversiform-regenerated-silk-fibroin-centric ink...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9612

    authors: Sun YL,Li Q,Sun SM,Huang JC,Zheng BY,Chen QD,Shao ZZ,Sun HB

    更新日期:2015-10-16 00:00:00

  • Publisher Correction: Parent of origin genetic effects on methylation in humans are common and influence complex trait variation.

    abstract::In the original version of this Article, the legend in the upper panel of Figure 2 incorrectly read 'paternal imprinting' and should have read 'maternal imprinting'. This has been corrected in both the PDF and HTML versions of the Article. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-019-10155-7

    authors: Zeng Y,Amador C,Xia C,Marioni R,Sproul D,Walker RM,Morris SW,Bretherick A,Canela-Xandri O,Boutin TS,Clark DW,Campbell A,Rawlik K,Hayward C,Nagy R,Tenesa A,Porteous DJ,Wilson JF,Deary IJ,Evans KL,McIntosh AM,Nava

    更新日期:2019-05-01 00:00:00

  • Glycogen branching enzyme controls cellular iron homeostasis via Iron Regulatory Protein 1 and mitoNEET.

    abstract::Iron Regulatory Protein 1 (IRP1) is a bifunctional cytosolic iron sensor. When iron levels are normal, IRP1 harbours an iron-sulphur cluster (holo-IRP1), an enzyme with aconitase activity. When iron levels fall, IRP1 loses the cluster (apo-IRP1) and binds to iron-responsive elements (IREs) in messenger RNAs (mRNAs) en...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13237-8

    authors: Huynh N,Ou Q,Cox P,Lill R,King-Jones K

    更新日期:2019-11-29 00:00:00