Structural variability of the ubiquitin specific protease DUSP-UBL double domains.

Abstract:

:USP4, 11 and 15 are three closely related paralogues of the ubiquitin specific protease (USP) family of deubiquitinating enzymes. The DUSP domain and the UBL domain in these proteins are juxtaposed which may provide a functional unit conferring specificity. We determined the structures of the USP15 DUSP-UBL double domain unit in monomeric and dimeric states. We then conducted comparative analysis of the structural and physical properties of all three DUSP-UBL units. We identified structural features that dictate different dispositions between constituent domains, which in turn may influence respective binding properties.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Elliott PR,Liu H,Pastok MW,Grossmann GJ,Rigden DJ,Clague MJ,Urbé S,Barsukov IL

doi

10.1016/j.febslet.2011.09.040

subject

Has Abstract

pub_date

2011-11-04 00:00:00

pages

3385-90

issue

21

eissn

0014-5793

issn

1873-3468

pii

S0014-5793(11)00737-X

journal_volume

585

pub_type

杂志文章
  • Caenorhabditis elegans DLC-1 associates with ribonucleoprotein complexes to promote mRNA regulation.

    abstract::Ribonucleoprotein complexes, which contain mRNAs and their regulator proteins, carry out post-transcriptional control of gene expression. The function of many RNA-binding proteins depends on their association with cofactors. Here, we use a genomic approach to identify transcripts associated with DLC-1, a protein previ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1002/1873-3468.13259

    authors: Day NJ,Ellenbecker M,Voronina E

    更新日期:2018-11-01 00:00:00

  • The combination of polymorphisms within interferon-gamma receptor 1 and receptor 2 associated with the risk of systemic lupus erythematosus.

    abstract::Genetic factors seem to play a significant role in susceptibility to systemic lupus erythematosus (SLE). We previously described the amino acid polymorphism (Val14Met) within the IFN-gamma receptor 1 (IFN-gammaRI), and that the frequency of the Metl4 allele in SLE patients was significantly higher than that of the hea...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(99)00701-2

    authors: Nakashima H,Inoue H,Akahoshi M,Tanaka Y,Yamaoka K,Ogami E,Nagano S,Arinobu Y,Niiro H,Otsuka T,Niho Y

    更新日期:1999-06-18 00:00:00

  • The hsc70 gene which is slightly induced by heat is the main virus inducible member of the hsp70 gene family.

    abstract::We have found that SV40 infection of CV1 cells induces the synthesis of a 72 kDa protein that upon molecular cloning was shown to be the product of the hsc70 gene. The above gene product was found to be mainly virus inducible, in contrast to the hsp70 gene product which was mainly heat inducible. The two genes were fo...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)01210-5

    authors: Sainis I,Angelidis C,Pagoulatos G,Lazaridis I

    更新日期:1994-12-05 00:00:00

  • The kinetics of the reaction of superoxide radical with Fe(III) complexes of EDTA, DETAPAC and HEDTA.

    abstract::To gain an understanding of the mechanism by which the hydroxyl free radical can arise in superoxide generating systems and learn how different chelaters of iron can inhibit this reaction, a pulse radiolysis kinetic study of the reaction of O;- with Fe(III)EDTA, Fe(III)HEDTA and Fe(III)DETAPAC (or DTPA)was undertaken....

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(83)80695-4

    authors: Buettner GR,Doherty TP,Patterson LK

    更新日期:1983-07-11 00:00:00

  • Three-dimensional model of NAD(+)-dependent 15-hydroxyprostaglandin dehydrogenase and relationships to the NADP(+)-dependent enzyme (carbonyl reductase).

    abstract::Modelling the amino acid sequence of NAD(+)-linked 15-hydroxyprostaglandin dehydrogenase into the three-dimensional structure of 3 alpha/20 beta-hydroxysteroid dehydrogenase shows that these two enzymes, as well as the NADP(+)-linked prostaglandin dehydrogenase (identical to carbonyl reductase) have similar conformati...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(93)81554-d

    authors: Krook M,Ghosh D,Duax W,Jörnvall H

    更新日期:1993-05-10 00:00:00

  • The translocation mechanism of P-glycoprotein.

    abstract::Multidrug transporters are involved in mediating the failure of chemotherapy in treating several serious diseases. The archetypal multidrug transporter P-glycoprotein (P-gp) confers resistance to a large number of chemically and functionally unrelated anti-cancer drugs by mediating efflux from cancer cells. The abilit...

    journal_title:FEBS letters

    pub_type: 杂志文章,评审

    doi:10.1016/j.febslet.2005.11.083

    authors: Callaghan R,Ford RC,Kerr ID

    更新日期:2006-02-13 00:00:00

  • Adrenergic regulation of ureogenesis in hepatocytes from adrenalectomized rats. Possible involvement of two pathways of signal transduction in alpha 1-adrenergic action.

    abstract::In hepatocytes from control rats, the ureogenic action of epinephrine is mainly mediated through alpha 1-adrenoceptors and the effect is independent of the presence of extracellular calcium. In hepatocytes from adrenalectomized rats, both alpha 1- and beta-adrenoceptors are involved in the action of epinephrine. Furth...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(84)80118-0

    authors: Hernández-Sotomayor SM,García-Sáinz JA

    更新日期:1984-01-30 00:00:00

  • The fMet-tRNA binding domain of translational initiation factor IF2: role and environment of its two Cys residues.

    abstract::Mutations of the cysteines (positions 668 and 714) were generated in the IF2 C domain of Bacillus stearothermophilus translation initiation factor IF2. The corresponding proteins were characterized functionally and structurally. Most (yet not all) amino acid replacements at both positions resulted in severe reduction ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(99)01280-6

    authors: Misselwitz R,Welfle K,Krafft C,Welfle H,Brandi L,Caserta E,Gualerzi CO

    更新日期:1999-10-15 00:00:00

  • Molecular cloning of the canine angiotensin II receptor. An AT1-like receptor with reduced affinity for DuP753.

    abstract::Canine aortic strip studies revealed insensitivity of angiotensin II (AII)-induced aortic contraction to inhibition by the non-peptide antagonist DuP753 (pKB = 6.7 +/- 0.1). In order to determine the origin of this phenomenon we cloned the canine homologue of the AT1 AII receptor. Expression of this cDNA in COS-7 cell...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)80307-2

    authors: Burns L,Clark KL,Bradley J,Robertson MJ,Clark AJ

    更新日期:1994-04-25 00:00:00

  • Purification of a putative Na+/D-glucose cotransporter from pig kidney brush border membranes on a phlorizin affinity column.

    abstract::Phlorizin, a potent inhibitor of the Na+/D-glucose cotransporter, was derivatised to 3-aminophlorizin and subsequently coupled to Affi-Gel 15. Affinity chromatography of pig kidney brush border membranes solubilised in Triton X-100 allowed the purification of a 60 kDa protein on this resin. We consider this protein to...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(88)81315-2

    authors: Kitlar T,Morrison AI,Kinne R,Deutscher J

    更新日期:1988-07-04 00:00:00

  • An interferon regulatory factor-like binding element restricts Xmyf-5 expression in the posterior somites during Xenopus myogenesis.

    abstract::The expression of myf-5, a key component of myogenic regulatory genes, declines progressively in mature somitic cells during vertebrate myogenesis. Little is known about how this down-regulation takes place. Here we provide evidence that an interferon regulatory factor binding element (IRF element) within the Xenopus ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(01)02688-6

    authors: Mei W,Yang J,Tao Q,Geng X,Rupp RA,Ding X

    更新日期:2001-09-07 00:00:00

  • Prorenin processing by cathepsin B in vitro and in transfected cells.

    abstract::Renin, which catalyzes the initial proteolytic cleavage reaction in the production of angiotensins, is first synthesized as a zymogen, prorenin, and requires the proteolytic removal of an amino-terminal prosegment for activation in vivo. The lysosomal hydrolase cathepsin B has been proposed as a prorenin processing en...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(98)01672-x

    authors: Jutras I,Reudelhuber TL

    更新日期:1999-01-22 00:00:00

  • Protein kinase-C mediates dual modulation of L-type Ca2+ channels in human vascular smooth muscle.

    abstract::The role of protein kinase C (PKC) in cellular regulation of L-type Ca2+ channels was investigated in human umbilical vein smooth muscle. Activation of PKC, by low concentrations (< 30 nM) of 12-O-tetradecanoyl-phorbol-13-acetate (TPA) caused inhibition of Ca2+ channels, while higher concentrations of TPA (> 100 nM) e...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)80458-3

    authors: Schuhmann K,Groschner K

    更新日期:1994-03-21 00:00:00

  • Measurement of relative amounts of phospho- and dephospho-B-50(GAP-43) peptides by fast atom bombardment-mass spectrometry.

    abstract::The biological role of phosphoproteins depends upon their degree of phosphorylation in vivo. Methods currently available to measure the degree of phosphorylation of a protein involve indirect procedures to detect the 32P-phosphate incorporation. We report here a direct method to measure relative amounts of phospho- an...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(92)81236-f

    authors: Di Luca M,de Graan PN,De Angelis L,Gispen WH,Cattabeni F

    更新日期:1992-04-20 00:00:00

  • Mutations in the proteolytic domain of Escherichia coli protease Lon impair the ATPase activity of the enzyme.

    abstract::Conserved residues of the proteolytic domain of Escherichia coli protease Lon, putative members of the classic catalytic triad (H665, H667, D676, and D743) were identified by comparison of amino acid sequences of Lon proteases. Mutant enzymes containing substitutions D676N, D743N, H665Y, and H667Y were obtained by sit...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(98)00012-x

    authors: Starkova NN,Koroleva EP,Rumsh LD,Ginodman LM,Rotanova TV

    更新日期:1998-01-30 00:00:00

  • Identification of amino acid residues of Ras protein that are essential for signal-transducing activity but not for enhancement of GTPase activity by GAP.

    abstract::To determine the amino acid residues required for the signal-transducing activity of the human c-Ha-Ras protein, we introduced point mutations at residues 45-54 near the 'effector region' (residues 32-40). We transfected PC12 cells with these mutant genes and also micro-injected the mutant proteins, bound with an unhy...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(91)80665-p

    authors: Fujita-Yoshigaki J,Shirouzu M,Koide H,Nishimura S,Yokoyama S

    更新日期:1991-12-09 00:00:00

  • Identification of Lys190 as the primary binding site for pyridoxal 5'-phosphate in human serum albumin.

    abstract::The covalent binding of pyridoxal 5'-phosphate (PLP) to human serum albumin (HSA) is important in the regulation of PLP metabolism. In plasma, PLP is bound to HSA at a single high-affinity and at two or more nonspecific sites. To characterize the primary PLP binding site, HSA was incubated with [3H] PLP, and the Schif...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(92)80073-p

    authors: Bohney JP,Fonda ML,Feldhoff RC

    更新日期:1992-02-24 00:00:00

  • Hybrid proteins between Pseudomonas exotoxin A and poliovirus protease 2Apro.

    abstract::Two hybrid proteins between Pseudomonas aeruginosa exotoxin A (PE) and poliovirus protease 2Apro have been generated. One hybrid protein contains the poliovirus 2Apro sequence replacing the region of PE corresponding to amino acids 413-607. The other hybrid contains in addition the transforming growth factor sequence....

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)01157-5

    authors: Novoa I,Feduchi E,Carrasco L

    更新日期:1994-11-21 00:00:00

  • Differential display analysis of mutants for the transcription factor Pdr1p regulating multidrug resistance in the budding yeast.

    abstract::The transcription factor Pdr1p recognizes Pdr1p/Pdr3p-response element (PDRE) to activate genes involved in multidrug resistance of the budding yeast. To identify novel targets of Pdr1p, we compared transcriptomes among the yeast cells bearing wild, disrupted and gain-of-function alleles of PDR1 using a high-throughpu...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(01)02792-2

    authors: Miura F,Yada T,Nakai K,Sakaki Y,Ito T

    更新日期:2001-09-07 00:00:00

  • A brain-specific transcript from the 3'-terminal region of the skeletal muscle ryanodine receptor gene.

    abstract::We have shown previously that the skeletal muscle ryanodine receptor mRNA of approximately 16,000 nucleotides codes 5,037 amino acid residues constituting the calcium release channel in skeletal muscle. In this study, RNA blot hybridization analysis shows that the brain contains an RNA species with an estimated size o...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(93)81547-d

    authors: Takeshima H,Nishimura S,Nishi M,Ikeda M,Sugimoto T

    更新日期:1993-05-10 00:00:00

  • Na(+)-driven ATP synthesis in Methanobacterium thermoautotrophicum and its differentiation from H(+)-driven ATP synthesis by rhodamine 6G.

    abstract::Rhodamine 6G (3 microM) effectively inhibited delta pH-driven ATP synthesis in Methanobacterium thermoautotrophicum while delta pNa-driven ATP synthesis was not affected by it. Rhodamine 6G inhibited Mg(2+)-stimulated ATPase activity of membrane vesicles prepared from these cells but the ATPase catalytic sector detach...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)00535-4

    authors: Smigán P,Majerník A,Greksák M

    更新日期:1994-06-27 00:00:00

  • Fatty acid 9- and 13-hydroperoxide lyases from cucumber.

    abstract::Fatty acid hydroperoxide lyase (HPL) is a novel P-450 enzyme that cleaves fatty acid hydroperoxides to form short-chain aldehydes and oxo-acids. In cucumber seedlings, the activities of both fatty acid 9HPL and 13HPL could be detected. High 9HPL activity was especially evident in hypocotyls. Using a polymerase chain r...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(00)01997-9

    authors: Matsui K,Ujita C,Fujimoto S,Wilkinson J,Hiatt B,Knauf V,Kajiwara T,Feussner I

    更新日期:2000-09-15 00:00:00

  • Permeabilizing action of an antimicrobial lactoferricin-derived peptide on bacterial and artificial membranes.

    abstract::A synthetic peptide (23 residues) that includes the antibacterial and lipopolysaccharide-binding regions of human lactoferricin, an antimicrobial sequence of lactoferrin, was used to study its action on cytoplasmic membrane of Escherichia coli 0111 and E. coli phospholipid vesicles. The peptide caused a depolarization...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(99)01545-8

    authors: Aguilera O,Ostolaza H,Quirós LM,Fierro JF

    更新日期:1999-12-03 00:00:00

  • Ultraweak photoemission from dark-adapted leaves and isolated chloroplasts.

    abstract::Dark-adapted isolated spinach chloroplasts and leaves, unlike sub-chloroplast fractions, are capable of emitting ultraweak light spontaneously (50-125 counts/s per cm2). The emission of leaves is due to two processes with activation energies of 97 and 25 kJ/mol while in isolated chloroplasts, it is the result of a sin...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(90)81454-v

    authors: Hideg E,Kobayashi M,Inaba H

    更新日期:1990-11-26 00:00:00

  • Studies on the primary sequence requirements for PKC-alpha, -beta 1 and -gamma peptide substrates.

    abstract::The substrate specificity of purified PKC-alpha, -beta and -gamma has been investigated. A series of synthetic peptides based upon the sequence surrounding serine-7 in glycogen synthase were generated and used to determine the basic residue requirements of these PKC isotypes. While PKC-alpha and -beta are indistinguis...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(90)80831-3

    authors: Marais RM,Nguyen O,Woodgett JR,Parker PJ

    更新日期:1990-12-17 00:00:00

  • Rotenone-induced reactive oxygen species signal the recruitment of STAT3 to mitochondria.

    abstract::STAT3, a transcription factor involved in various physiological and pathological processes, is also present in mitochondria. Mitochondrial STAT3 regulates complex I activity and reactive oxygen species (ROS) production, yet the mechanisms governing its translocation to mitochondria remain poorly understood. In this st...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1002/1873-3468.13741

    authors: Mohammed F,Gorla M,Bisoyi V,Tammineni P,Sepuri NBV

    更新日期:2020-05-01 00:00:00

  • Amphipathic polyethyleneglycols effectively prolong the circulation time of liposomes.

    abstract::Incorporation of dioleoyl N-(monomethoxy polyethyleneglycol succinyl)phosphatidylethanolamine (PEG-PE) into large unilamellar liposomes composed of egg phosphatidylcholine:cholesterol (1:1) does not significantly increase the content leakage when the liposomes are exposed to 90% human serum at 37 degrees C, yet the li...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(90)81016-h

    authors: Klibanov AL,Maruyama K,Torchilin VP,Huang L

    更新日期:1990-07-30 00:00:00

  • N-terminal heterogeneity of methylamine dehydrogenase from Thiobacillus versutus.

    abstract::The N-terminal processing of MADH from the bacterium T. versutus and the N-terminal heterogeneity of the isolated alpha subunit of the alpha 2 beta 2 protein complex was demonstrated by a combination of Edman sequence analysis of an electroblotted band, in situ digested with pyroglutamate aminopeptidase, and accurate ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(93)80402-g

    authors: Van Beeumen J,Van Driessche G,Huitema F,Duine JA,Canters GW

    更新日期:1993-10-25 00:00:00

  • Proteolytic cleavage of Pseudomonas aeruginosa exotoxin A in the presence of lipid bilayers of different composition.

    abstract::Pseudomonas aeruginosa exotoxin A (ETA) must be proteolytically nicked by furin at Arg279 before being translocated into the cytosol of target cells. A similar cleavage can also be obtained with trypsin. Using this assay we could show that the interaction with lipid bilayers can strongly influence the extent of nickin...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(97)01580-9

    authors: Nordera P,Menestrina G

    更新日期:1998-01-16 00:00:00

  • Membrane lipid composition protects Entamoeba histolytica from self-destruction by its pore-forming toxins.

    abstract::The protozoan parasite and human pathogen Entamoeba histolytica is protected against killing by its own lytic effector proteins. Amoebae withstand doses of amoebapores, their pore-forming polypeptides, that readily kill human Jurkat T cells. Moreover, the polypeptides do not bind to the amoebic surface membrane as evi...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/S0014-5793(04)00324-2

    authors: Andrä J,Berninghausen O,Leippe M

    更新日期:2004-04-23 00:00:00