Protein profiling analysis of skeletal muscle of a pufferfish, Takifugu rubripes.

Abstract:

:Protein profile of the skeletal muscle of Takifugu rubripes, a kind of pufferfish, was carried out with two-dimensional polyacrylamide gel electrophoresis (2-DE). Among the 112 protein spots detected in a silver-stained 2-D polyacrylamide gel, 33 were analyzed by Matrix Assisted Laser Desorption Ionisation tandem time-of-flight mass spectrometry (MALDI TOF/TOF MS), and 21 were identified by MASCOT. There were six structural proteins, such as alpha-actin, tropomyosin, and myosin heavy chain, and six with known functions such as T-cell receptor alpha chain, 4SNc-Tudor domain protein, SMC3 protein, and Translin associated factor X, as well as nine hypothetical novel proteins, including titin, andretinol dehydrogenase, and apolipoprotein A-I binding protein. These proteins were further categorized into six functional groups. This paper established a suitable technical protocol to eliminate the high abundance proteins while preserving middle abundance proteins for proteomics studies using Takifugu skeletal muscle. It is also favorable for further investigation on screening marker proteins for monitoring and controlling the quality of fish meat.

journal_name

Mol Biol Rep

authors

Lu J,Zheng J,Liu H,Li J,Chen H,Chen K

doi

10.1007/s11033-009-9684-2

subject

Has Abstract

pub_date

2010-06-01 00:00:00

pages

2141-7

issue

5

eissn

0301-4851

issn

1573-4978

journal_volume

37

pub_type

杂志文章
  • Increase of mtDNA number and its mutant copies in rat brain after exposure to 150 MeV protons.

    abstract::Proton beam therapy is widely used for treating brain tumor. Despite the efficacy of treatment, the use of this therapy has met some limitations associated with possible damage to normal brain tissues located beyond the tumor site. In this context, the exploration of the harmful effects of protons on the normal brain ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05491-7

    authors: Abdullaev S,Bulanova T,Timoshenko G,Gaziev AI

    更新日期:2020-06-01 00:00:00

  • Isolation and characterization of microsatellite markers in two species of the neotropical Epicharis (Hymenoptera, Apidae, Centridini) genus and cross-amplification in related species.

    abstract::Genetics can provide invaluable tools for management and conservation of bee populations, which are declining worldwide. Among these tools, microsatellite are very useful molecular markers for population analyses. The aim of this study was to isolate and characterize microsatellites for Epicharis (Anepicharis) dejeani...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-06076-0

    authors: Souza-Shibatta L,Ricardo PC,Pina WC,Flaresso-Neto V,Freiria GA,Kotelok-Diniz T,Gaglianone MC,Arias MC,Sofia SH

    更新日期:2021-01-21 00:00:00

  • The Ku70 -1310C/G promoter polymorphism is associated with breast cancer susceptibility in Chinese Han population.

    abstract::Ku70 plays an important role in the DSBR (DNA double-strand breaks repair) and maintenance of genomic integrity. Genetic variations within human Ku70 have been demonstrated to be associated with increased risk of several types of cancers. In this hospital-based case-control study, we aimed to investigate whether a sin...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-011-0773-7

    authors: He W,Luo S,Huang T,Ren J,Wu X,Shao J,Zhu Q

    更新日期:2012-01-01 00:00:00

  • Anomalous refractivity changes of gramicidin A in ethanol solutions.

    abstract::Studies of the refractive properties of Gramicidin A in absolute ethanol and in ethanol water mixtures showed that this peptide in solution undergoes a conformational transition resulting in species with different refractivity. Accordingly, the folded form of this peptide shows a lower specific refractive index increm...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/BF00357540

    authors: Derechin M,Jordan BE

    更新日期:1975-07-01 00:00:00

  • RNase MRP and rRNA processing.

    abstract::RNase MRP is a ribonucleoprotein enzyme with a structure similar to RNase P. It is required for normal processing of precursor rRNA, cleaving it in the Internal Transcribed Spacer 1. ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/BF00988708

    authors: Lindahl L,Zengel JM

    更新日期:1995-01-01 00:00:00

  • Associations between TNF-α -308 A/G and lymphotoxin-α +252 A/G polymorphisms and susceptibility to sarcoidosis: a meta-analysis.

    abstract::Several studies have examined the effects of the tumor necrosis factor-α (TNF-α) -308 A/G and lymphotoxin-α (LT-α) +252 A/G polymorphisms on susceptibility to sarcoidosis, showing mixed results. The purpose of this study was to examine whether the TNF-α -308 A/G and LT-α +252 A/G polymorphisms confer susceptibility to...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,meta分析

    doi:10.1007/s11033-013-2859-x

    authors: Song GG,Kim JH,Lee YH

    更新日期:2014-01-01 00:00:00

  • Sensitivity analysis of metabolic cascades catalyzed by bifunctional enzymes.

    abstract::Covalent modification/demodification cycles are common in metabolism. When the modification and demodification steps are carried out by two independent enzymes, the degree of modification can be ultrasensitive to the total concentration of either catalyst. We recently showed that the degree of modification of a target...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1023/a:1020334014497

    authors: Ortega F,Ehrenberg M,Acerenza L,Westerhoff HV,Mas F,Cascante M

    更新日期:2002-01-01 00:00:00

  • Multifactor dimensionality reduction analysis to elucidate the cross-talk between one-carbon and xenobiotic metabolic pathways in multi-disease models.

    abstract::Putatively functional polymorphisms of one-carbon and xenobiotic metabolic pathways influence susceptibility for wide spectrum of diseases. The current study was aimed to explore gene-gene interactions among these two metabolic pathways in four diseases i.e. breast cancer, systemic lupus erythematosus (SLE), coronary ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-015-3856-z

    authors: Naushad SM,Vijayalakshmi SV,Rupasree Y,Kumudini N,Sowganthika S,Naidu JV,Ramaiah MJ,Rao DN,Kutala VK

    更新日期:2015-07-01 00:00:00

  • Studies on protein organization of nucleosomes using cross-linking.

    abstract::When chromosomal proteins in chromatin or in mononucleosomes were extensively cross-linked with an imido ester, the H1-containing nonameric histone complex was revealed. In this complex, histone H1 is connected with the octamer of core histones. The cross-linking of H1 of the octamer is realized preferentially through...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/BF00805754

    authors: Bakayev VV,Bakayeva TG,Domansky NN

    更新日期:1981-08-14 00:00:00

  • Association of the interleukin-10 1082G/A, 819C/T and 3575T/A gene polymorphisms with systemic sclerosis: a meta-analysis.

    abstract::Many environmental and genetic factors have been contributed to the development of systemic sclerosis (SSc). To determine whether IL-10 gene polymorphisms are associated with SSc, we conducted a meta-analysis approach. A total of eight studies involving 1,034 SSc cases and 1,815 controls were obtained by electronic da...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,meta分析

    doi:10.1007/s11033-012-1510-6

    authors: Peng WJ,Wang BX,Pan HF,Tao JH,Zhang JQ,He Q,Xiao CC,Wang J

    更新日期:2012-06-01 00:00:00

  • An EGFR gene of the Pacific oyster Crassostrea gigas functions in wound healing and promotes cell proliferation.

    abstract::The epidermal growth factor receptor (EGFR) is an important receptor tyrosine kinase member in animals, which plays versatile functions in development, growth, tissue regeneration etc. Current knowledge on EGFR is poor in bivalve mollusks. In this study, we cloned and analyzed an EGFR gene from the Pacific oyster Cras...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3130-9

    authors: Sun L,Huan P,Wang H,Liu F,Liu B

    更新日期:2014-05-01 00:00:00

  • Tissue-specific expression of the chicken adipose differentiation-related protein (ADP) gene.

    abstract::Adipose differentiation-related protein gene (ADP) plays an important role in controlling lipid accumulation in mammals. It may also affect lipid deposition in birds. However, the molecular mechanism of its actions in birds remains unknown. In the present study, the coding sequence of ADP cDNA for Chinese native breed...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-009-9836-4

    authors: Zhao X,Zhu Q,Wang Y,Yang Z,Liu Y

    更新日期:2010-07-01 00:00:00

  • Functional characterization of a Δ5-like fatty acyl desaturase and its expression during early embryogenesis in the noble scallop Chlamys nobilis Reeve.

    abstract::Long-chain polyunsaturated fatty acids (LC-PUFAs) are essential in lots of important physiological processes, while, many marine species have no or limited ability of endogenous PUFA biosynthesis, normally due to the lack of key enzymes such as fatty acid desaturase (FAD). In this study, we isolated a scallop Chlamys ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-014-3633-4

    authors: Liu H,Guo Z,Zheng H,Wang S,Wang Y,Liu W,Zhang G

    更新日期:2014-11-01 00:00:00

  • Subtractive differential display: a modified differential display technique for isolating differentially expressed genes.

    abstract::Differential display (DD) is a novel PCR-based technique, very commonly used to study differentially expressed genes at the mRNA level. In this paper we report a modified version of this technique that we have used to study the differences between the mRNA population from brain tissue of adult and old rats. We have mo...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-006-9010-1

    authors: Pathak RU,Kanungo MS

    更新日期:2007-03-01 00:00:00

  • Genetic characterization of Benin's wild populations of Sarotherodon melanotheron melanotheron Rüppell, 1852.

    abstract::The Cichlid fish Sarotherodon melanotheron is typically found in West and Central African estuaries and lagoons. It represents a good candidate for promoting tilapia farming in brackish waters. Understanding the genetic diversity in its populations from the hydrographical basins of Southern Benin is primordial before ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-018-4354-x

    authors: Amoussou TO,Youssao Abdou Karim I,Dayo GK,Imorou Toko I,Séré M,Chikou A,Toguyéni A

    更新日期:2018-12-01 00:00:00

  • The effect of tunicamycin on the protease activity of GP63 from Leishmania major.

    abstract::The protease activity of gp63 from L. major was studied in relation to tunicamycin induced N-deglycosylation. It was found that after tunicamycin treatment, a N-deglycosylated product of gp63 with protease activity is present at the cell surface of Leishmania promastigote. ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/BF00419752

    authors: Hernandez C,Manenti S,Hernandez AG

    更新日期:1992-05-01 00:00:00

  • Serum levels of testosterone and gonadotrophins with respect to smoking status and genetic polymorphism of GSTT1.

    abstract:OBJECTIVES:It is reported that parental exposure to toxicants can influence offspring sex ratio at birth. Studies have reported that several chemicals found in cigarette smoke are substrates of glutathione S-transferase T1 (GSTT1, a member of GSTtheta). To determine the effect of cigarette smoke on serum levels of test...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-008-9319-z

    authors: Saadat M

    更新日期:2009-07-01 00:00:00

  • Methylenetetrahydrofolate reductase gene C677T, A1298C polymorphisms and pre-eclampsia risk: a meta-analysis.

    abstract::To determine whether methylenetetrahydrofolate reductase (MTHFR) C677T and A1298C polymorphisms are associated with pre-eclampsia susceptibility. Literature searches of the Pubmed, Embase, BIOSIS Previews and Web of Science were conducted to identify all eligible articles up to January 18th, 2013. The pooled odds rati...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,meta分析

    doi:10.1007/s11033-014-3415-z

    authors: Li X,Luo YL,Zhang QH,Mao C,Wang XW,Liu S,Chen Q

    更新日期:2014-08-01 00:00:00

  • The nature of the differential inhibition of polyphenylalanine synthesis in extracts from Artemia salina and rabbit reticulocytes by the Phytolacca americana protein.

    abstract::The difference in sensitivity of polyphenylalanine synthesis in extracts from Artemia salina and rabbit reticulocytes to inhibition by the Phytolacca americana protein (PAP) has been found to be linked to the source of the supernatant enzyme fraction and not the ribosomes. In the presence of reticulocyte supernatant e...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/BF00366257

    authors: Suits JP,Irvin JD

    更新日期:1976-04-01 00:00:00

  • Correlation analysis between three novel SNPs of the Src gene in bovine and milk production traits.

    abstract::As an essential signaling modulator, Src gene appears to be necessary for increased expression of the prolactin receptor, normal downstream signaling, and alveolar cell organization. In this study, we detected the polymorphism of Src gene by polymerase chain reaction-restriction fragment length polymorphism assay (PCR...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-010-0031-4

    authors: Liu W,Wang J,Li Q,Ju Z,Huang J,Wang H,Liu S,Li J,Zhong J,Wang C

    更新日期:2010-12-01 00:00:00

  • Angiotensin-converting enzyme gene polymorphism and allele frequencies in the Lebanese population: prevalence and review of the literature.

    abstract::We studied the distribution of the D/D, I/D, and I/I genotypes of the angiotensin-converting enzyme (ACE) in a sample of healthy Lebanese individuals to assess their prevalence and compare them with other populations. ACE genotypes were determined using the Cardiovascular Disease (CVD) StripAssay, which is based on a ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章,评审

    doi:10.1007/s11033-006-9013-y

    authors: Sabbagh AS,Otrock ZK,Mahfoud ZR,Zaatari GS,Mahfouz RA

    更新日期:2007-03-01 00:00:00

  • Development of SSR markers by next-generation sequencing of Korean landraces of chamoe (Cucumis melo var. makuwa).

    abstract::The oriental melon (Cucumis melo var. makuwa), called 'chamoe' in Korean, is a popular fruit crop cultivated mainly in Asia and a high-market value crop in Korea. To provide molecular breeding resources for chamoe, we developed and characterized genomic SSR markers from the preliminary Illumina read assemblies of Gotg...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-013-2803-0

    authors: Park I,Kim J,Lee J,Kim S,Cho O,Yang K,Ahn J,Nahm S,Kim H

    更新日期:2013-12-01 00:00:00

  • Combined effects of niacin and chromium treatment on vascular endothelial dysfunction in hyperlipidemic rats.

    abstract::Combined treatment with niacin and chromium has been found to have a protective effect against oxidative damage to different tissues of hyperlipidemic rats. But its effects on vascular endothelial dysfunction are less clear. This study was performed to investigate the effect of combined treatment with niacin and chrom...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-008-9309-1

    authors: Niu N,Yu YH,Wang Y,Wang LJ,Li Q,Guo LM

    更新日期:2009-07-01 00:00:00

  • DNA barcoding to characterize biodiversity of freshwater fishes of Egypt.

    abstract::The current study represents the first molecular characterization of freshwater fish species in Egypt from two major fish resources; the River Nile and Lake Nasser. A total of 160 DNA barcodes using a 655-bp-long fragment of the mitochondrial cytochrome oxidase subunit I (COI) gene were generated from 37 species belon...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-020-05657-3

    authors: Ali FS,Ismail M,Aly W

    更新日期:2020-08-01 00:00:00

  • Protein biosynthesis in isolated human scalp hair follicles.

    abstract::The present study demonstrates that protein biosynthesis can be studied in single isolated human scalp hair follicles. The matrix and the sheath are the main regions where amino acids are built in. Incorporation is linear for at least five hours. The newly synthesized proteins can be separated into a water-soluble, a ...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/BF00777556

    authors: Vermorken AJ,Weterings PJ,Bloemendal H

    更新日期:1979-02-15 00:00:00

  • Bax releases cytochrome c preferentially from a complex between porin and adenine nucleotide translocator. Hexokinase activity suppresses this effect.

    abstract::The mechanism by which external Bax releases cytochrome c is still controversial and may also depend on the type of mitochondria and the actual localisation of cytochrome c. Outer membrane porin acquires high binding affinity for hexokinase by interacting with the adenine nucleotide translocator (ANT) in the contact s...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1023/a:1020383108620

    authors: Vyssokikh MY,Zorova L,Zorov D,Heimlich G,Jürgensmeier JJ,Brdiczka D

    更新日期:2002-01-01 00:00:00

  • Impact of ERCC2 gene polymorphism on HIV-1 disease progression to AIDS among North Indian HIV patients.

    abstract::HIV/AIDS remains to be one of the killing diseases of mankind. Host genetic response is one of the factor which determine susceptibility to HIV and disease progression to AIDS. The aim of the present study was to evaluate the impact of ERCC2 Lyc ( 751 ) Gln (excision repair cross complementing rodent repair deficiency...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-010-9958-8

    authors: Sobti RC,Berhane N,Mahdi SA,Kler R,Hosseini SA,Kuttiat V,Wanchu A

    更新日期:2011-06-01 00:00:00

  • BACs-on-Beads™ assay, a rapid aneuploidy test, improves the diagnostic yield of conventional karyotyping.

    abstract::BACs-on-Beads (BoBs™) assay is a rapid aneuploidy test (RAT) that detects numerical chromosomal aneuploidies and multiple microdeletion/microduplication syndromes. This study was conducted to appraise the usefulness of the BoB™ assay as a complementary diagnostic tool to conventional karyotyping for the rapid detectio...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-019-05117-7

    authors: Farra C,Nassar AH,Mirza F,Abdouni L,Souaid M,Awwad J

    更新日期:2020-01-01 00:00:00

  • Inter-ethnic variability of three functional polymorphisms affecting the IMPDH2 gene.

    abstract::Human type II inosine monophosphate dehydrogenase (IMPDH2) is a key enzyme in the purine nucleotide biosynthetic pathway and constitutes a pivotal biological target for immunosuppressant and antiviral drugs. Several Single Nucleotide Polymorphisms (SNP) affecting the IMPDH2 gene sequence have been reported with potent...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1007/s11033-010-0668-z

    authors: Garat A,Cardenas CL,Lionet A,Devos A,Glowacki F,Kenani A,Migot-Nabias F,Allorge D,Lo-Guidice JM,Broly F,Cauffiez C

    更新日期:2011-11-01 00:00:00

  • Further characterization of human RNase MRP/RNase P and related autoantibodies.

    abstract::We characterized a panel of human RNase MRP/RNase P autoantibodies by immunoprecipitation, immunodepletion, immunoaffinity purification and immunoblotting. We report on the protein spectrum that is recognized by RNase MRP/RNase P autoantibodies. We also describe another, related patient serum that based on these assay...

    journal_title:Molecular biology reports

    pub_type: 杂志文章

    doi:10.1023/a:1006878511162

    authors: Karwan RM

    更新日期:1998-03-01 00:00:00