Tertiary interactions within the ribosomal exit tunnel.

Abstract:

:Although tertiary folding of whole protein domains is prohibited by the cramped dimensions of the ribosomal tunnel, dynamic tertiary interactions may permit folding of small elementary units within the tunnel. To probe this possibility, we used a beta-hairpin and an alpha-helical hairpin from the cytosolic N terminus of a voltage-gated potassium channel and determined a probability of folding for each at defined locations inside and outside the tunnel. Minimalist tertiary structures can form near the exit port of the tunnel, a region that provides an entropic window for initial exploration of local peptide conformations. Tertiary subdomains of the nascent peptide fold sequentially, but not independently, during translation. These studies offer an approach for diagnosing the molecular basis for folding defects that lead to protein malfunction and provide insight into the role of the ribosome during early potassium channel biogenesis.

journal_name

Nat Struct Mol Biol

authors

Kosolapov A,Deutsch C

doi

10.1038/nsmb.1571

subject

Has Abstract

pub_date

2009-04-01 00:00:00

pages

405-11

issue

4

eissn

1545-9993

issn

1545-9985

pii

nsmb.1571

journal_volume

16

pub_type

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