Abstract:
:Although tertiary folding of whole protein domains is prohibited by the cramped dimensions of the ribosomal tunnel, dynamic tertiary interactions may permit folding of small elementary units within the tunnel. To probe this possibility, we used a beta-hairpin and an alpha-helical hairpin from the cytosolic N terminus of a voltage-gated potassium channel and determined a probability of folding for each at defined locations inside and outside the tunnel. Minimalist tertiary structures can form near the exit port of the tunnel, a region that provides an entropic window for initial exploration of local peptide conformations. Tertiary subdomains of the nascent peptide fold sequentially, but not independently, during translation. These studies offer an approach for diagnosing the molecular basis for folding defects that lead to protein malfunction and provide insight into the role of the ribosome during early potassium channel biogenesis.
journal_name
Nat Struct Mol Bioljournal_title
Nature structural & molecular biologyauthors
Kosolapov A,Deutsch Cdoi
10.1038/nsmb.1571subject
Has Abstractpub_date
2009-04-01 00:00:00pages
405-11issue
4eissn
1545-9993issn
1545-9985pii
nsmb.1571journal_volume
16pub_type
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