Patterns of recombination and MLH1 foci density along mouse chromosomes: modeling effects of interference and obligate chiasma.

Abstract:

:Crossover interference in meiosis is often modeled via stationary renewal processes. Here we consider a new model to incorporate the known biological feature of "obligate chiasma" whereby in most organisms each bivalent almost always has at least one crossover. The initial crossover is modeled as uniformly distributed along the chromosome, and starting from its position, subsequent crossovers are placed with forward and backward stationary renewal processes using a chi-square distribution of intercrossover distances. We used our model as well as the standard chi-square model to simulate the patterns of crossover densities along bivalents or chromatids for those having zero, one, two, or three or more crossovers; indeed, such patterns depend on the number of crossovers. With both models, simulated patterns compare very well to those found experimentally in mice, both for MLH1 foci on bivalents and for crossovers on genetic maps. However, our model provides a better fit to experimental data as compared to the standard chi-square model, particularly regarding the distribution of numbers of crossovers per chromosome. Finally, our model predicts an enhancement of the recombination rate near the extremities, which, however, explains only a part of the pattern observed in mouse.

journal_name

Genetics

journal_title

Genetics

authors

Falque M,Mercier R,Mézard C,de Vienne D,Martin OC

doi

10.1534/genetics.106.070235

subject

Has Abstract

pub_date

2007-07-01 00:00:00

pages

1453-67

issue

3

eissn

0016-6731

issn

1943-2631

pii

genetics.106.070235

journal_volume

176

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Fine mapping in 94 inbred mouse strains using a high-density haplotype resource.

    abstract::The genetics of phenotypic variation in inbred mice has for nearly a century provided a primary weapon in the medical research arsenal. A catalog of the genetic variation among inbred mouse strains, however, is required to enable powerful positional cloning and association techniques. A recent whole-genome resequencin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.110.115014

    authors: Kirby A,Kang HM,Wade CM,Cotsapas C,Kostem E,Han B,Furlotte N,Kang EY,Rivas M,Bogue MA,Frazer KA,Johnson FM,Beilharz EJ,Cox DR,Eskin E,Daly MJ

    更新日期:2010-07-01 00:00:00

  • Focused genetic recombination of bacteriophage t4 initiated by double-strand breaks.

    abstract::A model system for studying double-strand-break (DSB)-induced genetic recombination in vivo based on the ets1 segCDelta strain of bacteriophage T4 was developed. The ets1, a 66-bp DNA fragment of phage T2L containing the cleavage site for the T4 SegC site-specific endonuclease, was inserted into the proximal part of t...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Shcherbakov V,Granovsky I,Plugina L,Shcherbakova T,Sizova S,Pyatkov K,Shlyapnikov M,Shubina O

    更新日期:2002-10-01 00:00:00

  • A method for detecting and measuring concealed variability in the mosquito, Culex tritaeniorhynchus.

    abstract::A natural population of Culex tritaeniorhynchus was sampled to test the efficacy of a proposed method to detect and measure concealed variability. Thirty-nine lethals and ten recessive visible mutations were uncovered out of a total of 125 chromosomes tested. ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Sakai RK,Baker RH

    更新日期:1972-06-01 00:00:00

  • A major controversy in codon-anticodon adaptation resolved by a new codon usage index.

    abstract::Two alternative hypotheses attribute different benefits to codon-anticodon adaptation. The first assumes that protein production is rate limited by both initiation and elongation and that codon-anticodon adaptation would result in higher elongation efficiency and more efficient and accurate protein production, especia...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.172106

    authors: Xia X

    更新日期:2015-02-01 00:00:00

  • Identification of three putative signal transduction genes involved in R gene-specified disease resistance in Arabidopsis.

    abstract::The RPS5 disease resistance gene of Arabidopsis mediates recognition of Pseudomonas syringae strains that possess the avirulence gene avrPphB. By screening for loss of RPS5-specified resistance, we identified five pbs (avrPphB susceptible) mutants that represent three different genes. Mutations in PBS1 completely bloc...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Warren RF,Merritt PM,Holub E,Innes RW

    更新日期:1999-05-01 00:00:00

  • A novel nonnull ZIP1 allele triggers meiotic arrest with synapsed chromosomes in Saccharomyces cerevisiae.

    abstract::During meiotic prophase, assembly of the synaptonemal complex (SC) brings homologous chromosomes into close apposition along their lengths. The Zip1 protein is a major building block of the SC in Saccharomyces cerevisiae. In the absence of Zip1, SC fails to form, cells arrest or delay in meiotic prophase (depending on...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.071100

    authors: Mitra N,Roeder GS

    更新日期:2007-06-01 00:00:00

  • Gene dosage and gene duplicability.

    abstract::The evolutionary process leading to the fixation of newly duplicated genes is not well understood. It was recently proposed that the fixation of duplicate genes is frequently driven by positive selection for increased gene dosage (i.e., the gene dosage hypothesis), because haploinsufficient genes were reported to have...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.090936

    authors: Qian W,Zhang J

    更新日期:2008-08-01 00:00:00

  • A genetic map of quantitative trait loci for body weight in the mouse.

    abstract::The genetic basis of body weight in the mouse was investigated by measuring frequency changes of microsatellite marker alleles in lines divergently selected for body weight from a base population of a cross between two inbred strains. In several regions of the genome, sharp peaks of frequency change at linked markers ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Keightley PD,Hardge T,May L,Bulfield G

    更新日期:1996-01-01 00:00:00

  • Meiotic chromosome dynamics dependent upon the rec8(+), rec10(+) and rec11(+) genes of the fission yeast Schizosaccharomyces pombe.

    abstract::During meiosis homologous chromosomes replicate once, pair, experience recombination, and undergo two rounds of segregation to produce haploid meiotic products. The rec8(+), rec10(+), and rec11(+) genes of the fission yeast Schizosaccharomyces pombe exhibit similar specificities for meiotic recombination and rec8(+) i...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Krawchuk MD,DeVeaux LC,Wahls WP

    更新日期:1999-09-01 00:00:00

  • Trans-specificity at loci near the self-incompatibility loci in Arabidopsis.

    abstract::We compared allele sequences of two loci near the Arabidopsis lyrata self-incompatibility (S) loci with sequences of A. thaliana orthologs and found high numbers of shared polymorphisms, even excluding singletons and sites likely to be highly mutable. This suggests maintenance of entire S-haplotypes for long evolution...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.051938

    authors: Charlesworth D,Kamau E,Hagenblad J,Tang C

    更新日期:2006-04-01 00:00:00

  • Synaptic adjustment of inversion loops in Neurospora crassa.

    abstract::Heterozygotes for three long inversions on chromosome 1 were analyzed by serial reconstruction from electron micrographs. Measurements of loop lengths at different meiotic prophase substages revealed that the homologous synapsis of the inverted region was gradually replaced by nonhomologous synapsis as loops were elim...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bojko M

    更新日期:1990-03-01 00:00:00

  • Genetic dissection of itpr gene function reveals a vital requirement in aminergic cells of Drosophila larvae.

    abstract::Signaling by the second messenger inositol 1,4,5-trisphosphate is thought to affect several developmental and physiological processes. Mutants in the inositol 1,4,5-trisphosphate receptor (itpr) gene of Drosophila exhibit delays in molting while stronger alleles are also larval lethal. In a freshly generated set of EM...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.166.1.225

    authors: Joshi R,Venkatesh K,Srinivas R,Nair S,Hasan G

    更新日期:2004-01-01 00:00:00

  • A cis-regulatory mutation in troponin-I of Drosophila reveals the importance of proper stoichiometry of structural proteins during muscle assembly.

    abstract::Rapid and high wing-beat frequencies achieved during insect flight are powered by the indirect flight muscles, the largest group of muscles present in the thorax. Any anomaly during the assembly and/or structural impairment of the indirect flight muscles gives rise to a flightless phenotype. Multiple mutagenesis scree...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.175604

    authors: Firdaus H,Mohan J,Naz S,Arathi P,Ramesh SR,Nongthomba U

    更新日期:2015-05-01 00:00:00

  • Counteracting Environmental Chemicals with Coenzyme Q10: An Educational Primer for Use with "Antioxidant CoQ10 Restores Fertility by Rescuing Bisphenol A-Induced Oxidative DNA Damage in the Caenorhabditis elegans Germline".

    abstract::Environmental toxicants are chemicals that negatively affect human health. Although there are numerous ways to limit exposure, the ubiquitous nature of certain environmental toxicants makes it impossible to avoid them entirely. Consequently, scientists are continuously working toward developing strategies for combatin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.120.303577

    authors: Bradford BR,Briand NE,Fassnacht N,Gervasio ED,Nowakowski AM,FitzGibbon TC,Maurina S,Benjamin AV,Kelly M,Checchi PM

    更新日期:2020-12-01 00:00:00

  • Fold recognition of the human immunodeficiency virus type 1 V3 loop and flexibility of its crown structure during the course of adaptation to a host.

    abstract::The third hypervariable (V3) region of the HIV-1 gp120 protein is responsible for many aspects of viral infectivity. The tertiary structure of the V3 loop seems to influence the coreceptor usage of the virus, which is an important determinant of HIV pathogenesis. Hence, the information about preferred conformations of...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.051508

    authors: Watabe T,Kishino H,Okuhara Y,Kitazoe Y

    更新日期:2006-03-01 00:00:00

  • Isolation of dominant XO-feminizing mutations in Caenorhabditis elegans: new regulatory tra alleles and an X chromosome duplication with implications for primary sex determination.

    abstract::A strain of Caenorhabditis elegans was constructed that permits selection of dominant or sex-linked mutations that transform XO animals (normally male) into fertile females, using a feminizing mutation, tra-2(e2046gf), which by itself does not sexually transform XO males. Twenty-three mutations were isolated after che...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hodgkin J,Albertson DG

    更新日期:1995-10-01 00:00:00

  • A genome-wide survey of sexually dimorphic expression of Drosophila miRNAs identifies the steroid hormone-induced miRNA let-7 as a regulator of sexual identity.

    abstract::MiRNAs bear an increasing number of functions throughout development and in the aging adult. Here we address their role in establishing sexually dimorphic traits and sexual identity in male and female Drosophila. Our survey of miRNA populations in each sex identifies sets of miRNAs differentially expressed in male and...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.169268

    authors: Fagegaltier D,König A,Gordon A,Lai EC,Gingeras TR,Hannon GJ,Shcherbata HR

    更新日期:2014-10-01 00:00:00

  • Testing neutrality in subdivided populations.

    abstract::Statistical tests of the neutrality hypothesis that are based on the sampling theory of Ewens (1972) require the assumption of panmixia. It is proposed that for a population comprising numerous local populations with weak gene flow among them, tests based on Ewens' theory can be applied separately to samples from each...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Slatkin M

    更新日期:1982-03-01 00:00:00

  • Cloning by gene amplification of two loci conferring multiple drug resistance in Saccharomyces.

    abstract::Yeast DNA fragments that confer multiple drug resistance when amplified were isolated. Cells containing a yeast genomic library cloned in the high copy autonomously replicating vector, YEp24, were plated on medium containing cycloheximide. Five out of 100 cycloheximide-resistant colonies were cross-resistant to the un...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Leppert G,McDevitt R,Falco SC,Van Dyk TK,Ficke MB,Golin J

    更新日期:1990-05-01 00:00:00

  • Intrachromosomal recombination between well-separated, homologous sequences in mammalian cells.

    abstract::In the present study, we investigated intrachromosomal homologous recombination in a murine hybridoma in which the recipient for recombination, the haploid, endogenous chromosomal immunoglobulin mu-gene bearing a mutation in the constant (Cmu) region, was separated from the integrated single copy wild-type donor Cmu r...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Baker MD,Read LR,Ng P,Beatty BG

    更新日期:1999-06-01 00:00:00

  • Gene expression analysis of the function of the male-specific lethal complex in Drosophila.

    abstract::Dosage compensation refers to the equal expression of X-linked genes despite the difference in copy number between the two sexes. The male-specific lethal (MSL) complex is concentrated on the X chromosome in males. A gene expression assay for embryos was developed to examine the function of this complex. In mutant mal...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.036020

    authors: Bhadra MP,Bhadra U,Kundu J,Birchler JA

    更新日期:2005-04-01 00:00:00

  • A Bayesian multilocus association method: allowing for higher-order interaction in association studies.

    abstract::For most common diseases with heritable components, not a single or a few single-nucleotide polymorphisms (SNPs) explain most of the variance for these disorders. Instead, much of the variance may be caused by interactions (epistasis) among multiple SNPs or interactions with environmental conditions. We present a new ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.071696

    authors: Albrechtsen A,Castella S,Andersen G,Hansen T,Pedersen O,Nielsen R

    更新日期:2007-06-01 00:00:00

  • unc-44 Ankyrin and stn-2 gamma-syntrophin regulate sax-7 L1CAM function in maintaining neuronal positioning in Caenorhabditis elegans.

    abstract::The L1 family of single-pass transmembrane cell adhesion molecules (L1CAMs) is conserved from Caenorhabditis elegans and Drosophila to vertebrates and is required for axon guidance, neurite outgrowth, and maintenance of neuronal positions. The extracellular region of L1CAMs mediates cell adhesion via interactions with...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.091272

    authors: Zhou S,Opperman K,Wang X,Chen L

    更新日期:2008-11-01 00:00:00

  • The Inheritance of Enzyme Variants for Tyrosine Aminotransferase, Nadp-Dependent Malate Dehydrogenase, Nadp-Dependent Isocitrate Dehydrogenase, and Tetrazolium Oxidase in TETRAHYMENA PYRIFORMIS, Syngen 1.

    abstract::The isozymic patterns of tyrosine aminotransferase, NADP malate dehydrogenase, NADP isocitrate dehydrogenase, and tetrazolium oxidase were examined by starch-gel electrophoresis in Tetrahymena pyriformis, syngen 1. The genetics of the alleles controlling these enzymes was studied through a breeding program. Each enzym...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Borden D,Miller ET,Nanney DL,Whitt GS

    更新日期:1973-08-01 00:00:00

  • Coevolution of the S-locus genes SRK, SLG and SP11/SCR in Brassica oleracea and B. rapa.

    abstract::Brassica self-incompatibility (SI) is controlled by SLG and SRK expressed in the stigma and by SP11/SCR expressed in the anther. We determined the sequences of the S domains of 36 SRK alleles, 13 SLG alleles, and 14 SP11 alleles from Brassica oleracea and B. rapa. We found three S haplotypes lacking SLG genes in B. ra...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Sato K,Nishio T,Kimura R,Kusaba M,Suzuki T,Hatakeyama K,Ockendon DJ,Satta Y

    更新日期:2002-10-01 00:00:00

  • Conserved WCPL and CX4C domains mediate several mating adhesin interactions in Saccharomyces cerevisiae.

    abstract::Several adhesins are induced by pheromones during mating in Saccharomyces cerevisiae, including Aga1p, Aga2p, Sag1p (Agalpha1p), and Fig2p. These four proteins all participate in or influence a well-studied agglutinin interaction mediated by Aga1p-Aga2p complexes and Sag1p; however, they also play redundant and essent...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.108.100073

    authors: Huang G,Dougherty SD,Erdman SE

    更新日期:2009-05-01 00:00:00

  • A model allowing continuous variation in electrophoretic mobility of neutral alleles.

    abstract::The infinite-sites model with no recombination is extended to include mutations that affect electrophoretic mobility. The model allows the effect of a single-site mutation to have a continuous effect on mobility. Formulae are obtained for the variance of electrophoretic mobility of alleles after an arbitrary lenght of...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Cobbs G

    更新日期:1979-06-01 00:00:00

  • P element-mediated in vivo deletion analysis of white-apricot: deletions between direct repeats are strongly favored.

    abstract::We have isolated and characterized deletions arising within a P transposon, P[hswa], in the presence of P transposase. P[hswa] carries white-apricot (wa) sequences, including a complete copia element, under the control of an hsp70 promoter, and resembles the original wa allele in eye color phenotype. In the presence o...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Kurkulos M,Weinberg JM,Roy D,Mount SM

    更新日期:1994-03-01 00:00:00

  • Does diploidy increase the rate of adaptation?

    abstract::Explanations of the evolution of diploidy have focused on the advantages gained from masking deleterious alleles. Recent theory has shown, however, that masking does not always provide an advantage to diploidy and would never favor diploidy in predominantly asexual organisms. We explore a neglected alternative theory ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Orr HA,Otto SP

    更新日期:1994-04-01 00:00:00

  • Quantitative trait loci affecting starvation resistance in Drosophila melanogaster.

    abstract::The ability to withstand periods of scarce food resources is an important fitness trait. Starvation resistance is a quantitative trait controlled by multiple interacting genes and exhibits considerable genetic variation in natural populations. This genetic variation could be maintained in the face of strong selection ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.166.4.1807

    authors: Harbison ST,Yamamoto AH,Fanara JJ,Norga KK,Mackay TF

    更新日期:2004-04-01 00:00:00