Development of a real-time PCR assay based on primer-probe energy transfer for the detection of swine vesicular disease virus.

Abstract:

:A real-time PCR assay based on primer-probe energy transfer (PriProET) was developed to detect swine vesicular disease virus (SVDV). Specificity tests of SVDV and heterologous virus showed specific amplification of SVDV strains only. The amplification plot for the closely related Coxsackievirus B5 remained negative. The sensitivity of assay was five copies of viral genome equivalents. A key point of the assay is tolerance toward mutations in the probe region. Melting curve analysis directly after PCR, with determination of probe melting point, confirmed specific hybridisation of the SVDV strains. Eight of twenty SVDV strains tested, revealed shifted melting points that indicated mutations in the probe region. All predicted mutations were confirmed by nucleotide sequencing. With the PriProET system there is a chance to identify phylogenetically divergent strains of SVDV, which may appear negative in other probe-based real-time PCR assays. At the same time, any difference in melting points may provide an indication of divergence in the probe region. The high sensitivity, specificity, and tolerance toward mutations in the probe region of the SVDV PriProET assay may improve the early and rapid detection of a wide range of SVDV strains, allowing reduced turnaround time and the use of high-throughput, automated technology.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Hakhverdyan M,Rasmussen TB,Thorén P,Uttenthal A,Belák S

doi

10.1007/s00705-006-0817-9

subject

Has Abstract

pub_date

2006-12-01 00:00:00

pages

2365-76

issue

12

eissn

0304-8608

issn

1432-8798

journal_volume

151

pub_type

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