Complete sequence and variability of a new subgroup B nepovirus infecting potato in central Peru.

Abstract:

:The complete bipartite genome (RNA1 and RNA2) of a new nepovirus infecting potato was obtained using small RNA sequencing and assembly complemented by Sanger sequencing. Each RNA encodes a single polyprotein, flanked by 5' and 3' untranslate regions (UTR) and followed by a poly (A) tail. The putative polyproteins encoded by RNA1 and RNA2 had sets of motifs which are characteristic of viruses in the genus Nepovirus. Sequence comparisons using the Pro-Pol region and the coat protein, including phylogenetic analysis of these regions, showed closest relationships with nepoviruses. The data obtained support the taxonomical status of this new virus (putative named Potato virus B, PVB) as a member of the genus Nepovirus, subgroup B.

journal_name

Arch Virol

journal_title

Archives of virology

authors

De Souza J,Müller G,Perez W,Cuellar W,Kreuze J

doi

10.1007/s00705-016-3147-6

subject

Has Abstract

pub_date

2017-03-01 00:00:00

pages

885-889

issue

3

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-016-3147-6

journal_volume

162

pub_type

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