Genetic requirements for the function of the archaeal virus SSV1 in Sulfolobus solfataricus: construction and testing of viral shuttle vectors.

Abstract:

:Directed open reading frame (ORF) disruption and a serial selection technique in Escherichia coli and the extremely thermophilic archaeon Sulfolobus solfataricus allowed the identification of otherwise cryptic crucial and noncrucial viral open reading frames in the genome of the archaeal virus SSV1. It showed that the 15. 5-kbp viral genome can incorporate a 2.96-kbp insertion without loss of viral function and package this DNA properly into infectious virus particles. The selection technique, based on the preferential binding of ethidium bromide to relaxed DNA and the resulting inhibition of endonuclease cleavage to generate a pool of mostly singly cut molecules, should be generally applicable. A fully functional viral shuttle vector for S. solfataricus and E. coli was made. This vector spreads efficiently through infected cultures of S. solfataricus, its replication is induced by UV irradiation, it forms infectious virus particles, and it is stable at high copy number in both S. solfataricus and E. coli. The classification of otherwise unidentifiable ORFs in SSV1 facilitates genetic analysis of this virus, and the shuttle vector should be useful for the development of genetic systems for Crenarchaeota.

journal_name

Genetics

journal_title

Genetics

authors

Stedman KM,Schleper C,Rumpf E,Zillig W

keywords:

subject

Has Abstract

pub_date

1999-08-01 00:00:00

pages

1397-405

issue

4

eissn

0016-6731

issn

1943-2631

journal_volume

152

pub_type

杂志文章

相关文献

GENETICS文献大全
  • Switching of a mating-type a mutant allele in budding yeast Saccharomyces cerevisiae.

    abstract::Aimed at investigating the recovery of a specific mutant allele of the mating type locus (MAT) by switching a defective MAT allele, these experiments provide information bearing on several models proposed for MAT interconversion in bakers yeast, Saccharomyces cerevisiae. Hybrids between heterothallic (ho) cells carryi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Klar AJ,Fogel S,Radin DN

    更新日期:1979-07-01 00:00:00

  • The rapidly evolving centromere-specific histone has stringent functional requirements in Arabidopsis thaliana.

    abstract::Centromeres control chromosome inheritance in eukaryotes, yet their DNA structure and primary sequence are hypervariable. Most animals and plants have megabases of tandem repeats at their centromeres, unlike yeast with unique centromere sequences. Centromere function requires the centromere-specific histone CENH3 (CEN...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.110.120337

    authors: Ravi M,Kwong PN,Menorca RM,Valencia JT,Ramahi JS,Stewart JL,Tran RK,Sundaresan V,Comai L,Chan SW

    更新日期:2010-10-01 00:00:00

  • General Methods for Evolutionary Quantitative Genetic Inference from Generalized Mixed Models.

    abstract::Methods for inference and interpretation of evolutionary quantitative genetic parameters, and for prediction of the response to selection, are best developed for traits with normal distributions. Many traits of evolutionary interest, including many life history and behavioral traits, have inherently nonnormal distribu...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.186536

    authors: de Villemereuil P,Schielzeth H,Nakagawa S,Morrissey M

    更新日期:2016-11-01 00:00:00

  • Binding of an X-Specific Condensin Correlates with a Reduction in Active Histone Modifications at Gene Regulatory Elements.

    abstract::Condensins are evolutionarily conserved protein complexes that are required for chromosome segregation during cell division and genome organization during interphase. In Caenorhabditis elegans, a specialized condensin, which forms the core of the dosage compensation complex (DCC), binds to and represses X chromosome t...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.119.302254

    authors: Street LA,Morao AK,Winterkorn LH,Jiao CY,Albritton SE,Sadic M,Kramer M,Ercan S

    更新日期:2019-07-01 00:00:00

  • Proteolytic activation of Rim1p, a positive regulator of yeast sporulation and invasive growth.

    abstract::In the yeast Saccharomyces cerevisiae, rim1, 8, 9, or 13 mutations cause four phenotypes: poor growth at low temperature, altered colony morphology, inefficient sporulation due to reduced expression of the meiotic activator IME1, and, as shown here, defective invasive growth. In this report, we have determined the rel...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Li W,Mitchell AP

    更新日期:1997-01-01 00:00:00

  • Genetic Dissection of Hybrid Male Sterility Across Stages of Spermatogenesis.

    abstract::Hybrid sterility is a common form of reproductive isolation between nascent species. Although hybrid sterility is routinely documented and genetically dissected in speciation studies, its developmental basis is rarely examined, especially in generations beyond the F1 generation. To identify phenotypic and genetic dete...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.118.301658

    authors: Schwahn DJ,Wang RJ,White MA,Payseur BA

    更新日期:2018-12-01 00:00:00

  • Efficient Genome-Wide Sequencing and Low-Coverage Pedigree Analysis from Noninvasively Collected Samples.

    abstract::Research on the genetics of natural populations was revolutionized in the 1990s by methods for genotyping noninvasively collected samples. However, these methods have remained largely unchanged for the past 20 years and lag far behind the genomics era. To close this gap, here we report an optimized laboratory protocol...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.187492

    authors: Snyder-Mackler N,Majoros WH,Yuan ML,Shaver AO,Gordon JB,Kopp GH,Schlebusch SA,Wall JD,Alberts SC,Mukherjee S,Zhou X,Tung J

    更新日期:2016-06-01 00:00:00

  • The multivulva phenotype of certain Caenorhabditis elegans mutants results from defects in two functionally redundant pathways.

    abstract::We previously identified Caenorhabditis elegans mutants in which certain of the six vulval precursor cells adopt fates normally expressed by other vulval precursor cells. These mutants define genes that appear to function in the response to an intercellular signal that induces vulval development. The multivulva (Muv) ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ferguson EL,Horvitz HR

    更新日期:1989-09-01 00:00:00

  • Inferring the Joint Demographic History of Multiple Populations: Beyond the Diffusion Approximation.

    abstract::Understanding variation in allele frequencies across populations is a central goal of population genetics. Classical models for the distribution of allele frequencies, using forward simulation, coalescent theory, or the diffusion approximation, have been applied extensively for demographic inference, medical study des...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.117.200493

    authors: Jouganous J,Long W,Ragsdale AP,Gravel S

    更新日期:2017-07-01 00:00:00

  • Slit-roundabout signaling neutralizes netrin-Frazzled-mediated attractant cue to specify the lateral positioning of longitudinal axon pathways.

    abstract::An extending axon growth cone is subjected to attractant and repellent cues. It is not clear how these growth cones discriminate the two opposing forces and select their projection paths. Here, we report that in the Drosophila nerve cord the growth cones of longitudinal tracts are subjected to attraction by the Netrin...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.036863

    authors: Bhat KM

    更新日期:2005-05-01 00:00:00

  • Spe3, which encodes spermidine synthase, is required for full repression through NRE(DIT) in Saccharomyces cerevisiae.

    abstract::We previously identified a transcriptional regulatory element, which we call NRE(DIT), that is required for repression of the sporulation-specific genes, DIT1 and DIT2, during vegetative growth of Saccharomyces cerevisiae. Repression through this element is dependent on the Ssn6-Tup1 corepressor. In this study, we sho...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Friesen H,Tanny JC,Segall J

    更新日期:1998-09-01 00:00:00

  • Searching for recursive causal structures in multivariate quantitative genetics mixed models.

    abstract::Biology is characterized by complex interactions between phenotypes, such as recursive and simultaneous relationships between substrates and enzymes in biochemical systems. Structural equation models (SEMs) can be used to study such relationships in multivariate analyses, e.g., with multiple traits in a quantitative g...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.109.112979

    authors: Valente BD,Rosa GJ,de Los Campos G,Gianola D,Silva MA

    更新日期:2010-06-01 00:00:00

  • Inhibition of transcription by the Caenorhabditis elegans germline protein PIE-1: genetic evidence for distinct mechanisms targeting initiation and elongation.

    abstract::In Caenorhabditis elegans embryos, specification of the germ lineage depends on PIE-1, a maternal protein that blocks mRNA transcription in germline blastomeres. Studies in mammalian cell culture have suggested that PIE-1 inhibits P-TEFb, a kinase that phosphorylates serine 2 in the carboxyl-terminal domain (CTD) repe...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.083212

    authors: Ghosh D,Seydoux G

    更新日期:2008-01-01 00:00:00

  • Identification and characterization of Schizosaccharomyces pombe asp1(+), a gene that interacts with mutations in the Arp2/3 complex and actin.

    abstract::The Arp2/3 complex is an essential component of the actin cytoskeleton in yeast and is required for the movement of actin patches. In an attempt to identify proteins that interact with this complex in the fission yeast Schizosaccharomyces pombe, we sought high-copy suppressors of the S. pombe arp3-c1 mutant, and have ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Feoktistova A,McCollum D,Ohi R,Gould KL

    更新日期:1999-07-01 00:00:00

  • Allele-specific interactions between ttg and gl1 during trichome development in Arabidopsis thaliana.

    abstract::Trichome development in Arabidopsis thaliana is a well-characterized model for the study of plant cell differentiation. Two genes that play an essential role in the initiation of trichome development are GL1 and TTG. Mutations in either gene prevent the initiation of most trichomes. The GL1 gene encodes a myb-related ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Larkin JC,Walker JD,Bolognesi-Winfield AC,Gray JC,Walker AR

    更新日期:1999-04-01 00:00:00

  • Differential Phosphorylation Provides a Switch to Control How α-Arrestin Rod1 Down-regulates Mating Pheromone Response in Saccharomyces cerevisiae.

    abstract::G-protein-coupled receptors (GPCRs) are integral membrane proteins that initiate stimulus-dependent activation of cognate heterotrimeric G-proteins, triggering ensuing downstream cellular responses. Tight regulation of GPCR-evoked pathways is required because prolonged stimulation can be detrimental to an organism. St...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.186122

    authors: Alvaro CG,Aindow A,Thorner J

    更新日期:2016-05-01 00:00:00

  • Stabilization of microsatellite sequences by variant repeats in the yeast Saccharomyces cerevisiae.

    abstract::We examined the effect of a single variant repeat on the stability of a 51-base pair (bp) microsatellite (poly GT). We found that the insertion stabilizes the microsatellite about fivefold in wild-type strains. The stabilizing effect of the variant base was also observed in strains with mutations in the DNA mismatch r...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Petes TD,Greenwell PW,Dominska M

    更新日期:1997-06-01 00:00:00

  • Repair replication and photorepair of DNA in larvae of Drosophila melanogaster.

    abstract::Repair replication of DNA has been studied in first instar larvae of Drosophila melanogaster with isopycnic centrifugation techniques. Larvae were fed BUdR, FUdR, streptomycin, penicillin, and Fungazone for two to four hours prior to exposure to UV, X-rays, MMS, or EMS. Feeding was continued for four hours in the pres...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Boyd JB,Presley JM

    更新日期:1974-08-01 00:00:00

  • Management of subdivided populations in conservation programs: development of a novel dynamic system.

    abstract::Within the context of a conservation program the management of subdivided populations implies a compromise between the control of the global genetic diversity, the avoidance of high inbreeding levels, and, sometimes, the maintenance of a certain degree of differentiation between subpopulations. We present a dynamic an...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.083816

    authors: Fernández J,Toro MA,Caballero A

    更新日期:2008-05-01 00:00:00

  • Functional divergence in tandemly duplicated Arabidopsis thaliana trypsin inhibitor genes.

    abstract::In multigene families, variation among loci and alleles can contribute to trait evolution. We explored patterns of functional and genetic variation in six duplicated Arabidopsis thaliana trypsin inhibitor (ATTI) loci. We demonstrate significant variation in constitutive and herbivore-induced transcription among ATTI l...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.166.3.1419

    authors: Clauss MJ,Mitchell-Olds T

    更新日期:2004-03-01 00:00:00

  • Chromosomal transmission bias in laboratory hybrids between wild strains of the two European subspecies of house mice.

    abstract::Laboratory crosses between wild strains of the two European house mouse subspecies Mus musculus domesticus (2n = 34) and M. m. musculus (2n = 40) were performed to analyze the selective processes involved in the non-introgression of centromeric regions of Robertsonian (Rb) fusions in the Danish hybrid zone. The chromo...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Lenormand T,Fel-Clair F,Manolakou K,Alibert P,Britton-Davidian J

    更新日期:1997-11-01 00:00:00

  • Saccharomyces cerevisiae Mer2, Mei4 and Rec114 form a complex required for meiotic double-strand break formation.

    abstract::In budding yeast, at least 10 proteins are required for formation of the double-strand breaks (DSBs) that initiate meiotic recombination. Spo11 is the enzyme responsible for cleaving DNA and is found in a complex that also contains Ski8, Rec102, and Rec104. The Mre11/Rad50/Xrs2 complex is required for both DSB formati...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.106.058768

    authors: Li J,Hooker GW,Roeder GS

    更新日期:2006-08-01 00:00:00

  • Deletion of a novel F-box protein, MUS-10, in Neurospora crassa leads to altered mitochondrial morphology, instability of mtDNA and senescence.

    abstract::While mitochondria are renowned for their role in energy production, they also perform several other integral functions within the cell. Thus, it is not surprising that mitochondrial dysfunction can negatively impact cell viability. Although mitochondria have received an increasing amount of attention in recent years,...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.110.117200

    authors: Kato A,Kurashima K,Chae M,Sawada S,Hatakeyama S,Tanaka S,Inoue H

    更新日期:2010-08-01 00:00:00

  • Analysis of the doublesex female protein in Drosophila melanogaster: role on sexual differentiation and behavior and dependence on intersex.

    abstract::doublesex (dsx) is unusual among the known sex-determination genes of Drosophila melanogaster in that functional homologs are found in distantly related species. In flies, dsx occupies a position near the bottom of the sex determination hierarchy. It is expressed in male- and female-specific forms and these proteins f...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Waterbury JA,Jackson LL,Schedl P

    更新日期:1999-08-01 00:00:00

  • Evolutionary relationships of four species of hawaiian Drosophila as measured by DNA reassociation.

    abstract::Four species of the Hawaiian Drosophila planitibia subgroup which are homosequential in their polytene chromosomes are resident on the islands of Molokai, Maui and Hawaii. Comparisons of DNA sequence divergence in these four have been made by hybridization of total single-copy radiolabeled tracer DNA from each of the ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Hunt JA,Carson HL

    更新日期:1983-06-01 00:00:00

  • Analysis of a mutant exhibiting conditional sorting to dense core secretory granules in Tetrahymena thermophila.

    abstract::The formation of dense core granules (DCGs) requires both the sorting of granule contents from other secretory proteins and a postsorting maturation process. The Tetrahymena thermophila strain SB281 fails to synthesize DCGs, and previous analysis suggested that the defect lay at or near the sorting step. Because this ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bowman GR,Turkewitz AP

    更新日期:2001-12-01 00:00:00

  • Gamma-ray mutagenesis in bacteriophage T4.

    abstract::137Cs-gamma irradiation of bacteriophage T4 induces large deletions plus a variety of types of point mutations. All mutations arise with single-hit kinetics, and all by a misrepair process. The estimated point mutation rate is 1.5 X 10(-9) per locus per rad. ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Conkling MA,Grunau JA,Drake JW

    更新日期:1976-04-01 00:00:00

  • Generalized Transduction in CAULOBACTER CRESCENTUS.

    abstract::Two closely related bacteriophage, varphiCr30 and varphiCr35, are the first bacteriophage shown to mediate generalized transduction in Caulobacter crescentus. Unlike most other transducing phage, they are virulent and do not form any sort of lysogenic relationship with their host. However, they are rather inefficient ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ely B,Johnson RC

    更新日期:1977-11-01 00:00:00

  • An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL.

    abstract::Methodologies for mapping of genes underlying quantitative traits have advanced considerably but have not been accompanied by a parallel development of new population structures. We present a novel population consisting of 50 introgression lines (ILs) originating from a cross between the green-fruited species Lycopers...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Eshed Y,Zamir D

    更新日期:1995-11-01 00:00:00

  • Testing neutrality in subdivided populations.

    abstract::Statistical tests of the neutrality hypothesis that are based on the sampling theory of Ewens (1972) require the assumption of panmixia. It is proposed that for a population comprising numerous local populations with weak gene flow among them, tests based on Ewens' theory can be applied separately to samples from each...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Slatkin M

    更新日期:1982-03-01 00:00:00