Cloning of ARE-containing genes by AU-motif-directed display.

Abstract:

:A procedure suitable for cloning labile mRNAs that contain AU motifs is presented (AU-DD). These motifs are regulatory sequences within the so-called AU-rich elements (AREs) often found in 3' untranslated regions of genes such as cytokines, proto-oncogenes, and transcription factors. AU-DD is an AU-motif-directed differential display that permits the identification of ARE-containing genes differentially expressed after cell activation. It has been applied to peripheral blood monocytes and a T cell clone to isolate 59 cDNA fragments associated to activation. Fourteen percent of isolated fragments belong to already known genes that certainly are cytokines and transduction/transcription factors. The remaining 86% correspond to unknown genes of which 92% have been confirmed to be differentially expressed. These data demonstrate the efficiency of the system and support the notion that numerous genes falling into those categories remain unidentified and that they can be cloned by this method.

journal_name

Genomics

journal_title

Genomics

authors

Dominguez O,Ashhab Y,Sabater L,Belloso E,Caro P,Pujol-Borrell R

doi

10.1006/geno.1998.5548

subject

Has Abstract

pub_date

1998-12-01 00:00:00

pages

278-86

issue

2

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(98)95548-3

journal_volume

54

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Physical mapping by PFGE localizes the COL3A1 and COL5A2 genes to a 35-kb region on human chromosome 2.

    abstract::The genes encoding the alpha 1 chain of Type III collagen (COL3A1) and the alpha 2 chain of Type V (COL5A2) collagen have been mapped to the long arm of human chromosome 2. Linkage analysis in CEPH families indicated that these two genes are close to each other, with no recombination in 37 informative meioses. In the ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90302-b

    authors: Cutting GR,McGinniss MJ,Kasch LM,Tsipouras P,Antonarakis SE

    更新日期:1990-10-01 00:00:00

  • Clustering of hypervariable minisatellites in the proterminal regions of human autosomes.

    abstract::Six of the human minisatellites detected by DNA fingerprint probes have been localized by in situ hybridization to human metaphase chromosomes. These hypervariable loci are not dispersed at random in the human genome, but show preferential, though not exclusive, localization to terminal G-bands of human autosomes. Two...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(88)90127-9

    authors: Royle NJ,Clarkson RE,Wong Z,Jeffreys AJ

    更新日期:1988-11-01 00:00:00

  • Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fluorescence and M13 tailed primers.

    abstract::The use of short tandem repeat polymorphisms (STRPs) as marker loci for linkage analysis is becoming increasingly important due to their large numbers in the human genome and their high degree of polymorphism. Fluorescence-based detection of the STRP pattern with an automated DNA sequencer has improved the efficiency ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1264

    authors: Oetting WS,Lee HK,Flanders DJ,Wiesner GL,Sellers TA,King RA

    更新日期:1995-12-10 00:00:00

  • Isolation and characterization of a novel gene from the DiGeorge chromosomal region that encodes for a mediator subunit.

    abstract::Hemizygous deletions on chromosome 22q11.2 result in developmental disorders referred to as DiGeorge syndrome (DGS)/velocardiofacial syndrome (VCFS). We report the isolation of a novel gene, PCQAP (PC2 glutamine/Q-rich-associated protein), that maps to the DiGeorge typically deleted region and encodes a protein identi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6566

    authors: Berti L,Mittler G,Przemeck GK,Stelzer G,Günzler B,Amati F,Conti E,Dallapiccola B,Hrabé de Angelis M,Novelli G,Meisterernst M

    更新日期:2001-06-15 00:00:00

  • The human homologue of the Drosophila tailless gene (TLX): characterization and mapping to a region of common deletion in human lymphoid leukemia on chromosome 6q21.

    abstract::Deletion of the long arm of chromosome 6 (6q) is one of the most common chromosomal abnormalities in human hematological malignancies. Two distinct regions of minimal deletion have been identified by loss of heterozygosity studies at 6q25 to 6q27 (RMD-1) and at 6q21 to 6q23 (RMD-2), suggesting the presence of one or m...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5270

    authors: Jackson A,Panayiotidis P,Foroni L

    更新日期:1998-05-15 00:00:00

  • The generation of a library of PCR-analyzed microsatellite variants for genetic mapping of the mouse genome.

    abstract::Forty-three sequences containing simple sequence repeats or microsatellites were generated from an M13 library of total genomic mouse DNA. These sequences were analyzed for size variation using the polymerase chain reaction and gel electrophoresis without the need for radiolabeling. Seventy-two percent of the sequence...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90175-e

    authors: Cornall RJ,Aitman TJ,Hearne CM,Todd JA

    更新日期:1991-08-01 00:00:00

  • Genomic structure and chromosomal localization of GML (GPI-anchored molecule-like protein), a gene induced by p53.

    abstract::Among its known functions, tumor suppressor gene p53 serves as a transcriptional regulator and mediates various signals through activation of downstream genes. We recently identified a novel gene, GML (glycosylphosphatidylinositol (GPI)-anchored molecule-like protein), whose expression is specifically induced by wildt...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4680

    authors: Kimura Y,Furuhata T,Urano T,Hirata K,Nakamura Y,Tokino T

    更新日期:1997-05-01 00:00:00

  • A physical map of the human PI and AACT genes.

    abstract::We have used probes from the human genes PI, PIL, and AACT (alpha 1-antitrypsin, alpha 1-antitrypsin-related sequence, and alpha 1-antichymotrypsin) to make a pulsed-field map of the surrounding region of 14q31-32. We have discovered that the PI-PIL gene cluster is only 220 kb away from the AACT gene and that it is or...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90172-q

    authors: Sefton L,Kelsey G,Kearney P,Povey S,Wolfe J

    更新日期:1990-07-01 00:00:00

  • SCOPE++: sequence classification of homoPolymer emissions.

    abstract:BACKGROUND:mRNA polyadenylation, the addition of a poly(A) tail to the 3'-end of pre-mRNA, is a process critical to gene expression and regulation in eukaryotes. To understand the molecular mechanisms governing polyadenylation and other relevant biological processes, it is important to identify these poly(A) tails accu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2014.07.005

    authors: Morton JT,Abrudan P,Figueroa N,Liang C,Karro JE

    更新日期:2014-09-01 00:00:00

  • A physical and transcript map of the MCOLN1 gene region on human chromosome 19p13.3-p13.2.

    abstract::Mutations in MCOLN1 have been found to cause mucolipidosis type IV (MLIV; MIM 252650), a rare autosomal recessive lysosomal storage disorder found primarily in the Ashkenazi Jewish population. As a part of the successful cloning of MCOLN1, we constructed a 1.4-Mb physical map containing 14 BACs and 4 cosmids that enco...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6526

    authors: Acierno JS Jr,Kennedy JC,Falardeau JL,Leyne M,Bromley MC,Colman MW,Sun M,Bove C,Ashworth LK,Chadwick LH,Schiripo T,Ma S,Goldin E,Schiffmann R,Slaugenhaupt SA

    更新日期:2001-04-15 00:00:00

  • A 1.5-Mb-resolution radiation hybrid map of the cat genome and comparative analysis with the canine and human genomes.

    abstract::We report the construction of a 1.5-Mb-resolution radiation hybrid map of the domestic cat genome. This new map includes novel microsatellite loci and markers derived from the 2X genome sequence that target previous gaps in the feline-human comparative map. Ninety-six percent of the 1793 cat markers we mapped have ide...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.08.007

    authors: Murphy WJ,Davis B,David VA,Agarwala R,Schäffer AA,Pearks Wilkerson AJ,Neelam B,O'Brien SJ,Menotti-Raymond M

    更新日期:2007-02-01 00:00:00

  • Tissue-specific expression of a BAC transgene targeted to the Hprt locus in mouse embryonic stem cells.

    abstract::The hypoxanthine phosphoribosyltransferase (Hprt) locus has been shown to have minimal influence on transgene expression when used as a surrogate site in the mouse genome. We have developed a method to transfer bacterial artificial chromosomes (BACs) as a single copy into the partially deleted Hprt locus of embryonic ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2003.12.015

    authors: Heaney JD,Rettew AN,Bronson SK

    更新日期:2004-06-01 00:00:00

  • Point mutation in the human dystrophin gene: identification through western blot analysis.

    abstract::Using antibodies directed against the amino-terminus of dystrophin, we identified a truncated protein in a Duchenne muscular dystrophy patient. Antibodies directed against the carboxy-terminus failed to identify any cross-reactive material, a result consistent with premature termination of dystrophin translation. The ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90332-9

    authors: Bulman DE,Gangopadhyay SB,Bebchuck KG,Worton RG,Ray PN

    更新日期:1991-06-01 00:00:00

  • Phenylalanine hydroxylase gene: novel missense mutation in exon 7 causing severe phenylketonuria.

    abstract::By direct sequence analysis of 94 mutant phenylalanine hydroxylase alleles using polymerase chain reaction-based techniques, we identified a C to T transition in exon 7 of the human phenylalanine hydroxylase gene that is associated with RFLP haplotypes 1 and 4. A leucine for proline substitution at position 281 can be...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90238-a

    authors: Dworniczak B,Grudda K,Stümper J,Bartholomé K,Aulehla-Scholz C,Horst J

    更新日期:1991-01-01 00:00:00

  • Functional characterization of the human PAX3 gene regulatory region.

    abstract::Spatiotemporal expression of the PAX3 gene is tightly regulated during development. We have isolated and sequenced the 5'-flanking regulatory region of human PAX3. Primer extension and ribonuclease protection mapping revealed that transcription is initiated from a single start site downstream of a TATA-like motif in h...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5711

    authors: Okladnova O,Syagailo YV,Tranitz M,Riederer P,Stöber G,Mössner R,Lesch KP

    更新日期:1999-04-01 00:00:00

  • Methylation of the DXS255 hypervariable locus 5' CCGG site may be affected by factors other than X-chromosome activation status.

    abstract::Differences in the methylation status of certain cytosine residues between active and inactive X chromosomes can be used to determine X-inactivation in females heterozygous for X-linked restriction fragment length polymorphisms. We have studied methylation patterns in 105 females heterozygous at the DXS255 locus by So...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80285-x

    authors: Cachia PG,Culligan DJ,Thomas ED,Whittaker J,Jacobs A,Padua RA

    更新日期:1992-09-01 00:00:00

  • Identification of a doublet missense substitution in the bovine LRP4 gene as a candidate causal mutation for syndactyly in Holstein cattle.

    abstract::Syndactyly in Holstein cattle is an autosomal recessive abnormality characterized by the fusion of the functional digits. This disorder has been previously mapped to the telomeric part of bovine chromosome 15. Here, we describe the fine-mapping of syndactyly in Holstein cattle to a 3.5-Mb critical interval using a com...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.05.007

    authors: Duchesne A,Gautier M,Chadi S,Grohs C,Floriot S,Gallard Y,Caste G,Ducos A,Eggen A

    更新日期:2006-11-01 00:00:00

  • Disequilibrium mapping: composite likelihood for pairwise disequilibrium.

    abstract::The pattern of linkage disequilibrium between a disease locus and a set of marker loci has been shown to be a useful tool for geneticists searching for disease genes. Several methods have been advanced to utilize the pairwise disequilibrium between the disease locus and each of a set of marker loci. However, none of t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0419

    authors: Devlin B,Risch N,Roeder K

    更新日期:1996-08-15 00:00:00

  • Developmental expression of p107 mRNA and evidence for alternative splicing of the p107 (RBL1) gene product.

    abstract::Expression of p107, a protein with homology to the retinoblastoma tumor suppressor (pRB), was monitored during murine development. Northern blot tissue surveys identified two transcripts of 4.9 and 2.4 kb that hybridized to a p107 cDNA clone. Expression of both transcripts was detected in fetal tissues, with particula...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1184

    authors: Kim KK,Soonpaa MH,Wang H,Field LJ

    更新日期:1995-08-10 00:00:00

  • A high-resolution cat radiation hybrid and integrated FISH mapping resource for phylogenomic studies across Felidae.

    abstract::We describe the construction of a high-resolution radiation hybrid (RH) map of the domestic cat genome, which includes 2662 markers, translating to an estimated average intermarker distance of 939 kilobases (kb). Targeted marker selection utilized the recent feline 1.9x genome assembly, concentrating on regions of low...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.09.010

    authors: Davis BW,Raudsepp T,Pearks Wilkerson AJ,Agarwala R,Schäffer AA,Houck M,Chowdhary BP,Murphy WJ

    更新日期:2009-04-01 00:00:00

  • Chromosome translocations in breast cancer with breakpoints at 8p12.

    abstract::Unbalanced chromosome translocations with breakpoints around 8p12, resulting in loss of distal 8p, are common in carcinomas. We have mapped the 8p12 breakpoints in three breast cancer cell lines, T-47D, MDA-MB-361, and ZR-75-1, using YACs and PACs between D8S540 and D8S255 by fluorescence in situ hybridization. All th...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6178

    authors: Courtay-Cahen C,Morris JS,Edwards PA

    更新日期:2000-05-15 00:00:00

  • Experimental and bioinformatic characterisation of the promoter region of the Marfan syndrome gene, FBN1.

    abstract::Mutations in the FBN1 gene, encoding the extracellular matrix protein fibrillin-1, result in the dominant connective tissue disease Marfan syndrome. Marfan syndrome has a variable phenotype, even within families carrying the same FBN1 mutation. Differences in gene expression resulting from sequence differences in the ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2009.06.005

    authors: Summers KM,Bokil NJ,Baisden JM,West MJ,Sweet MJ,Raggatt LJ,Hume DA

    更新日期:2009-10-01 00:00:00

  • The human growth hormone locus: nucleotide sequence, biology, and evolution.

    abstract::The human chromosomal growth hormone locus contained on cloned DNA and spanning approximately 66,500 bp was sequenced in its entirety to provide a framework for the analysis of its biology and evolution. This locus evolved by a series of duplications and contains in its present form five genes which display a remarkab...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90271-1

    authors: Chen EY,Liao YC,Smith DH,Barrera-Saldaña HA,Gelinas RE,Seeburg PH

    更新日期:1989-05-01 00:00:00

  • Localization of the gene for the ciliary neurotrophic factor receptor (CNTFR) to human chromosome 9.

    abstract::Ciliary neurotrophic factor (CNTF) has recently been found to be important for the survival of motor neurons and has shown activity in animal models of amyotrophic lateral sclerosis (ALS). CNTF therefore holds promise as a treatment for ALS, and it and its receptor (CNTFR) are candidates for a gene involved in familia...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1409

    authors: Donaldson DH,Britt DE,Jones C,Jackson CL,Patterson D

    更新日期:1993-09-01 00:00:00

  • Improved gene targeting in C. elegans using counter-selection and Flp-mediated marker excision.

    abstract::Gene targeting is widely used for the precise manipulation of genes. However, in the model organism Caenorhabditis elegans non-transposon mediated gene targeting remains laborious, and as a result has not been widely used. One obstacle to the wider use of this approach is the difficulty of identifying homologous recom...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2009.09.001

    authors: Vázquez-Manrique RP,Legg JC,Olofsson B,Ly S,Baylis HA

    更新日期:2010-01-01 00:00:00

  • Physiological analysis and transcriptome sequencing reveal the effects of drier air humidity stress on Pterocarya stenoptera.

    abstract::Identifying physiological and transcriptomic changes can provide insights into the effects of drier air humidity stress on plants. In this study, we selected 6-month-old seedlings of Pterocarya stenoptera as study materials and used physiological index detection and transcriptome sequencing to investigate the adaptati...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.09.027

    authors: Ye XF,Li Y,Liu HL,He YX

    更新日期:2020-11-01 00:00:00

  • Identification of an alternative transcript from the human iduronate-2-sulfatase (IDS) gene.

    abstract::Iduronate-2-sulfatase (IDS) is involved in the degradation of heparan sulfate and dermatan sulfate in the lysosomes, and a deficiency in this enzyme results in Hunter syndrome. A 2.3-kb cDNA clone that contains the entire coding sequence of IDS has previously been reported. Here we describe the identification of a 1.4...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1249

    authors: Malmgren H,Carlberg BM,Pettersson U,Bondeson ML

    更新日期:1995-09-01 00:00:00

  • Rat gastric H,K-ATPase beta-subunit gene: intron/exon organization, identification of multiple transcription initiation sites, and analysis of the 5'-flanking region.

    abstract::A rat genomic library was screened using a gastric H,K-ATPase beta-subunit cDNA probe, and two clones were identified. Restriction endonuclease mapping and Southern hybridization analyses indicated that each of these clones contains the entire H,K-ATPase beta-subunit gene. The nucleotide sequence was determined for th...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90131-w

    authors: Newman PR,Shull GE

    更新日期:1991-10-01 00:00:00

  • Tandem repeats 3' of the IGHA genes in the human immunoglobulin heavy chain gene cluster.

    abstract::The human IGH constant region spans 350 kb and includes nine genes and two pseudogenes. All of the constant region gene cluster has been cloned except for sequences between the IGHD and IGHG3 genes, between the IGHA1 and IGHG2 genes, and the 3' region downstream of the IGHA2 gene. The regions 3' of the IGHA genes, whi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0338

    authors: Kang HK,Cox DW

    更新日期:1996-07-01 00:00:00

  • The gene for the human putative apoE receptor is on chromosome 12 in the segment q13-14.

    abstract::We have previously described the cDNA coding for a new lipoprotein receptor that contains domains closely related to the ligand-binding domain of the LDL receptor. We have now investigated the localization of the gene for this new receptor by hybridization of the cDNA to panels of rodent cells containing subsets of hu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90087-6

    authors: Myklebost O,Arheden K,Rogne S,Geurts van Kessel A,Mandahl N,Herz J,Stanley K,Heim S,Mitelman F

    更新日期:1989-07-01 00:00:00