A physical and transcript map of the MCOLN1 gene region on human chromosome 19p13.3-p13.2.

Abstract:

:Mutations in MCOLN1 have been found to cause mucolipidosis type IV (MLIV; MIM 252650), a rare autosomal recessive lysosomal storage disorder found primarily in the Ashkenazi Jewish population. As a part of the successful cloning of MCOLN1, we constructed a 1.4-Mb physical map containing 14 BACs and 4 cosmids that encompasses the region surrounding MCOLN1 on human chromosome 19p13.3-p13.2-a region to which linkage or association has been reported for multiple diseases. Here we detail the precise physical mapping of 28 expressed sequence tags that represent unique UniGene clusters, of which 15 are known genes. We present a detailed transcript map of the MCOLN1 gene region that includes the genes KIAA0521, neuropathy target esterase (NTE), a novel zinc finger gene, and two novel transcripts in addition to MCOLN1. We also report the identification of eight new polymorphic markers between D19S406 and D19S912, which allowed us to pinpoint the location of MCOLN1 by haplotype analysis and which will facilitate future fine-mapping in this region. Additionally, we briefly describe the correlation between the observed haplotypes and the mutations found in MCOLN1. The complete 14-marker haplotypes of non-Jewish disease chromosomes, which are crucial for the genetic diagnosis of MLIV in the non-Jewish population, are presented here for the first time.

journal_name

Genomics

journal_title

Genomics

authors

Acierno JS Jr,Kennedy JC,Falardeau JL,Leyne M,Bromley MC,Colman MW,Sun M,Bove C,Ashworth LK,Chadwick LH,Schiripo T,Ma S,Goldin E,Schiffmann R,Slaugenhaupt SA

doi

10.1006/geno.2001.6526

subject

Has Abstract

pub_date

2001-04-15 00:00:00

pages

203-10

issue

2

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(01)96526-7

journal_volume

73

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • The human glutamate dehydrogenase gene family: gene organization and structural characterization.

    abstract::Glutamate dehydrogenase is a mitochondrially located, key metabolic enzyme. In addition to its general metabolic role, GLUD is important in neurotransmission. Significant alterations in GLUD enzymatic activity have been associated with certain neurodegenerative human disorders. Although a single species of human GLUD ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1152

    authors: Michaelidis TM,Tzimagiorgis G,Moschonas NK,Papamatheakis J

    更新日期:1993-04-01 00:00:00

  • Complex genetic organization of junB: multiple blocks of flanking evolutionarily conserved sequence at the murine and human junB loci.

    abstract::A comparison of the murine and human junB loci reveals nine regions of distal 5'- and 3'-flanking DNA that exhibit greater than 72% sequence identity. A large fraction (over 50%) of the junB locus is contained in these flanking evolutionarily conserved sequences (FECS), which may be required for effecting the proper t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1135

    authors: Phinney DG,Tseng SW,Ryder K

    更新日期:1995-07-20 00:00:00

  • An integrated physical map of 210 markers assigned to the short arm of human chromosome 11.

    abstract::Using a panel of patient cell lines with chromosomal breakpoints, we constructed a physical map for the short arm of human chromosome 11. We focused on 11p15, a chromosome band harboring at least 25 known genes and associated with the Beckwith-Wiedemann syndrome, several childhood tumors, and genomic imprinting. This ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1312

    authors: Redeker E,Hoovers JM,Alders M,van Moorsel CJ,Ivens AC,Gregory S,Kalikin L,Bliek J,de Galan L,van den Bogaard R

    更新日期:1994-06-01 00:00:00

  • A genetic linkage map of 17 markers on human chromosome 21.

    abstract::We have constructed a genetic linkage map of 17 markers on the long arm of human chromosome 21, including six genes and two anonymous loci with a variable number of tandem repeats. The estimated length of the map is 103 cM in males and 140 cM in females, assuming Kosambi interference. Recombination in females was appr...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90282-6

    authors: Warren AC,Slaugenhaupt SA,Lewis JG,Chakravarti A,Antonarakis SE

    更新日期:1989-05-01 00:00:00

  • Discrimination between alpha-satellite DNA sequences from chromosomes 21 and 13 by using polymerase chain reaction.

    abstract::alpha-Satellite subfamilies from chromosomes 21 and 13 are almost identical in sequence and cannot be distinguished from each other by hybridization techniques. A general method based on membrane-bound PCR is described here, allowing the discrimination of alpha-satellite DNA sequences from each of these two chromosome...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80256-3

    authors: Charlieu JP,Murgue B,Laurent AM,Marçais B,Bellis M,Roizès G

    更新日期:1992-10-01 00:00:00

  • Fine-mapping, genomic organization, and transcript analysis of the human ubiquitin-conjugating enzyme gene UBE2L3.

    abstract::The human UBE2L3 gene encodes the ubiquitin-conjugating enzyme UbcH7, demonstrated to participate in the ubiquitination of p53, c-Fos, and NF-kappaB in vitro. We report the fine-mapping of this four-exon gene to chromosome 22q11.2. We have constructed a comprehensive genomic clone contig across this gene, demonstratin...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5257

    authors: Moynihan TP,Cole CG,Dunham I,O'Neil L,Markham AF,Robinson PA

    更新日期:1998-07-01 00:00:00

  • Isolation and regional mapping of NotI and EagI clones from human chromosome 21.

    abstract::NotI and EagI boundary libraries were constructed for human chromosome 21. One hundred forty-seven clones were isolated from the somatic cell hybrid 72532X-6 and localized using a hybrid mapping panel. After identification of those clones, which were isolated more than once, as well as those probes derived from a prev...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90497-3

    authors: Gao JZ,Erickson P,Patterson D,Jones C,Drabkin H

    更新日期:1991-05-01 00:00:00

  • Expression and chromosomal localization of the human alpha 4/IGBP1 gene, the structure of which is closely related to the yeast TAP42 protein of the rapamycin-sensitive signal transduction pathway.

    abstract::To study the function of the B cell signal transduction molecule alpha 4 (IGBP1), we isolated a human alpha 4 (IGBP1) gene that has sequence similarity to the yeast protein (TAP42) involved in the rapamycin-sensitive signal transduction pathway. The human alpha 4 has sequence identities with murine alpha 4 of 83.4% nu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.5048

    authors: Onda M,Inui S,Maeda K,Suzuki M,Takahashi E,Sakaguchi N

    更新日期:1997-12-15 00:00:00

  • A primary genetic map of the pericentromeric region of the human X chromosome.

    abstract::We report a genetic linkage map of the pericentromeric region of the human X chromosome, extending from Xp11 to Xq13. Genetic analysis with five polymorphic markers, including centromeric alpha satellite DNA, spanned a distance of approximately 38 cM. Significant lod scores were obtained with linkage analysis in 26 fa...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(88)90017-1

    authors: Mahtani MM,Willard HF

    更新日期:1988-05-01 00:00:00

  • Phenylalanine hydroxylase gene: novel missense mutation in exon 7 causing severe phenylketonuria.

    abstract::By direct sequence analysis of 94 mutant phenylalanine hydroxylase alleles using polymerase chain reaction-based techniques, we identified a C to T transition in exon 7 of the human phenylalanine hydroxylase gene that is associated with RFLP haplotypes 1 and 4. A leucine for proline substitution at position 281 can be...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90238-a

    authors: Dworniczak B,Grudda K,Stümper J,Bartholomé K,Aulehla-Scholz C,Horst J

    更新日期:1991-01-01 00:00:00

  • Physical and genetic maps for chromosome 10.

    abstract::A fluorescence in situ hybridization (FISH) physical map of 14 polymorphic loci on chromosome 10 covers over 62% of the fractional length of chromosome 10. The positions of three previously mapped loci are confirmed, nine more are refined, and two new loci are cytogenetically mapped. The order of loci determined by FI...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1192

    authors: Lichter JB,Difilippantonio MJ,Pakstis AJ,Goodfellow PJ,Ward DC,Kidd KK

    更新日期:1993-05-01 00:00:00

  • Genomic characterization, localization, and functional expression of FGL2, the human gene encoding fibroleukin: a novel human procoagulant.

    abstract::For diseases in which thrombosis plays a pivotal role, such as virus-induced fulminant hepatitis, fetal loss syndrome, and xenograft rejection, the major procoagulant has remained elusive. Here we describe the isolation and functional expression of a distinct human prothrombinase, termed FGL2. The murine fgl2 gene pro...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6444

    authors: Yuwaraj S,Ding J,Liu M,Marsden PA,Levy GA

    更新日期:2001-02-01 00:00:00

  • Multipoint mapping of the central core disease locus.

    abstract::A linkage analysis with 12 DNA markers from proximal 19q was performed in eight families with central core disease (CCO). Two-point analysis gave a peak lod score of Z = 4.95 at theta = 0.00 for the anonymous marker D19S190 and of Z = 2.53 at theta = 0.00 for the ryanodine receptor (RYR1) candidate gene. Multipoint li...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1302

    authors: Schwemmle S,Wolff K,Palmucci LM,Grimm T,Lehmann-Horn F,Hübner C,Hauser E,Iles DE,MacLennan DH,Müller CR

    更新日期:1993-07-01 00:00:00

  • Genetic analysis of circulating tumor cells in pancreatic cancer patients: A pilot study.

    abstract:UNLABELLED:Pancreatic cancer is one of the most aggressive malignant tumors, mainly due to an aggressive metastasis spreading. In recent years, circulating tumor cells became associated to tumor metastasis. Little is known about their expression profiles. The aim of this study was to develop a complete workflow making ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2015.02.003

    authors: Görner K,Bachmann J,Holzhauer C,Kirchner R,Raba K,Fischer JC,Martignoni ME,Schiemann M,Alunni-Fabbroni M

    更新日期:2015-07-01 00:00:00

  • Chromosome localization and genomic structure of the KiSS-1 metastasis suppressor gene (KISS1).

    abstract::The identification and sequence of KiSS-1 (HGMW-approved symbol, KISS1), a human malignant melanoma metastasis-suppressor gene, was recently published. In this report, we present a corrected genomic sequence, genomic structure, and refined chromosomal location for KiSS-1. The genomic organization of the sequence revea...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5566

    authors: West A,Vojta PJ,Welch DR,Weissman BE

    更新日期:1998-11-15 00:00:00

  • Human estrogen receptor-like 1 (ESRL1) gene: genomic organization, chromosomal localization, and promoter characterization.

    abstract::Estrogen receptor-like 1a (ESRL1a; same as estrogen receptor-related orphan receptors, ERR1) belongs to a subfamily of the nuclear receptor superfamily. We have previously shown that human ESRL1a modulates estrogen responsiveness of the lactoferrin gene promoter in transiently transfected endometrial carcinoma RL95-2 ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4850

    authors: Shi H,Shigeta H,Yang N,Fu K,O'Brian G,Teng CT

    更新日期:1997-08-15 00:00:00

  • Genomic structure, promoter sequence, and revised translation of human homeobox gene HLX1.

    abstract::The human homeobox gene HLX1 appears to be involved in hemopoietic development and may represent a candidate gene for various developmental or hemopoietic disorders. We have isolated genomic clones for the gene, determined its intron-exon organization, and confirmed its map location on chromosome 1q41-q42. The transcr...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1394

    authors: Kennedy MA,Rayner JC,Morris CM

    更新日期:1994-07-15 00:00:00

  • Beware of using small statistical samples when assessing the quality of a DNA library.

    abstract::DNA libraries often contain very large numbers of clones (from 1000 up to 700,000). Since at present it is impossible to analyze all of these clones, usually statistical samples comprising less than 100 clones are tested. The quality of the library is then assessed by linear extrapolation. Occasionally, full coverage ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1476

    authors: Köllner M,Greulich KO

    更新日期:1994-09-01 00:00:00

  • A nonsense mutation in the optic atrophy 3 gene (OPA3) causes dilated cardiomyopathy in Red Holstein cattle.

    abstract::Cardiomyopathies are severe degenerative disorders of the myocardium that lead to heart failure. During the last three decades bovine dilated cardiomyopathy (BDCMP) was observed worldwide in cattle of Holstein-Friesian origin. In the Swiss cattle population BDCMP affects Fleckvieh and Red Holstein breeds. The heart of...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2010.09.005

    authors: Owczarek-Lipska M,Plattet P,Zipperle L,Drögemüller C,Posthaus H,Dolf G,Braunschweig MH

    更新日期:2011-01-01 00:00:00

  • Bisulfite sequencing in preimplantation embryos: DNA methylation profile of the upstream region of the mouse imprinted H19 gene.

    abstract::In this study we describe a modification of the bisulfite genomic sequencing protocol that enables detection of methylation from as few as five diploid cells from preimplantation mouse embryos. We have used bisulfite genomic sequencing to study the methylation profile of the putative imprinting element upstream of the...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5371

    authors: Warnecke PM,Mann JR,Frommer M,Clark SJ

    更新日期:1998-07-15 00:00:00

  • Frequent DNA polymorphisms exist in inbred CBA/J and C3H/HeN mice.

    abstract::Although occasional DNA polymorphisms have been observed in inbred mice, CBA/J and C3H/HeN mice have two microsatellite alleles at over 1/3 of microsatellite loci tested. Since DNA polymorphisms were not detected in DBA/2J, C57BL/6J, and BALB/cJ, the frequency of microsatellite polymorphisms appears to be strain speci...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0592

    authors: Yuan B,Shum-Siu A,Lentsch EM,Hu LH,Hendler FJ

    更新日期:1996-11-15 00:00:00

  • Chromosome mapping of the owl monkey CSF1R and IL5 genes.

    abstract::We mapped the owl monkey colony-stimulating factor 1 receptor (CSF1R) locus to the proximal region of chromosome 3q of karyotype VI(K-VI) and karyotype V(K-V) and the interleukin 5 (IL5) locus to the mid-region of chromosome 3q(K-VI) and 19q(K-IV) using a combination of Southern hybridization of somatic cells and in s...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90034-p

    authors: Ma NS,Lin KC

    更新日期:1992-08-01 00:00:00

  • Four ubiquitously expressed genes, RD (D6S45)-SKI2W (SKIV2L)-DOM3Z-RP1 (D6S60E), are present between complement component genes factor B and C4 in the class III region of the HLA.

    abstract::The association of the HLA class III region with many diseases motivates the investigation of unidentified genes in the 30-kb segment between complement component genes Bf and C4. RD, which codes for a putative RNA binding protein, is 205 bp downstream of Bf. SKI2W (HGMW-approved symbol SKIV2L), a DEVH-box gene probab...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5499

    authors: Yang Z,Shen L,Dangel AW,Wu LC,Yu CY

    更新日期:1998-11-01 00:00:00

  • Chromosomal assignment of the genes for proprotein convertases PC4, PC5, and PACE 4 in mouse and human.

    abstract::The genes for three subtilisin/kexin-like proprotein convertases, PC4, PC5, and PACE4, were mapped in the mouse by RFLP analysis of a DNA panel from a (C57BL/6JEi x SPRET/Ei)F1 x SPRET/Ei backcross. The chromosomal locations of the human homologs were determined by Southern blot analysis of a DNA panel from human-rode...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80090-9

    authors: Mbikay M,Seidah NG,Chrétien M,Simpson EM

    更新日期:1995-03-01 00:00:00

  • Complete structure of the human Gc gene: differences and similarities between members of the albumin gene family.

    abstract::The sequence of the human Gc gene, including 4228 base pairs of the 5'-flanking region and 8514 base pairs of the 3' flanking region (55,136 in total), was determined from five overlapping lambda phage clones. The sequence spans 42,394 base pairs from the cap site to the polyadenylation site, and it reveals that the g...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1258

    authors: Witke WF,Gibbs PE,Zielinski R,Yang F,Bowman BH,Dugaiczyk A

    更新日期:1993-06-01 00:00:00

  • Uroporphyrinogen-III synthase: molecular cloning, nucleotide sequence, expression of a mouse full-length cDNA, and its localization on mouse chromosome 7.

    abstract::Uroporphyrinogen-III synthase (URO-S; EC 4.2.1.75), the fourth enzyme in the heme biosynthetic pathway, is responsible for the conversion of hydroxymethylbilane to the cyclic tetrapyrrole, uroporphyrinogen III. The deficient activity of URO-S is the enzymatic defect in congenital erythropoietic porphyria (CEP), an aut...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80175-l

    authors: Xu W,Kozak CA,Desnick RJ

    更新日期:1995-04-10 00:00:00

  • A novel human Mcm protein: homology to the yeast replication protein Mis5 and chromosomal location.

    abstract::Mcm proteins perform functions related to the regulation of eukaryotic genome replication. Previous work has shown that human cells contain at least five different Mcm proteins. We report now the amino acid sequence of an additional human Mcm protein, p105Mcm, and show that it is homologous to the Schizosaccharomyces ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0530

    authors: Holthoff HP,Hameister H,Knippers R

    更新日期:1996-10-01 00:00:00

  • Investigating the mechanism of chromosomal deletion: characterization of 39 deletion breakpoints in introns 47 and 48 of the human dystrophin gene.

    abstract::The region of the dystrophin gene containing introns 45-50 is characterized by a high rate of recombination events that give rise to large deletions causing dystrophinopathy. The nucleotide sequence of this intronic region has recently been released in GenBank. With the aim of further understanding the mechanism favor...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:

    authors: Toffolatti L,Cardazzo B,Nobile C,Danieli GA,Gualandi F,Muntoni F,Abbs S,Zanetti P,Angelini C,Ferlini A,Fanin M,Patarnello T

    更新日期:2002-11-01 00:00:00

  • Cloning and identification of two novel NBCe1 splice variants from mouse reproductive tract tissues: a comparative study of NCBT genes.

    abstract::Na(+)-coupled HCO(3)(-) transporters (NCBTs) of the SLC4 family play critical roles in pH regulation as well as transepithelial HCO(3)(-) transport. We systematically examined, in the mouse reproductive tract tissues, the mRNA expression of five NCBTs as well as the five NBCe1 (Slc4a4) variants NBCe1-A through -E, of ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2011.04.010

    authors: Liu Y,Xu JY,Wang DK,Wang L,Chen LM

    更新日期:2011-08-01 00:00:00

  • The gene for the muscle-specific enolase is on the short arm of human chromosome 17.

    abstract::The human gene encoding the muscle-specific beta-enolase has been isolated. The beta-enolase gene was mapped to chromosome 17 by analysis of a panel of rodent-human somatic cell hybrids. The gene was further localized to the short arm and tentatively to the region 17pter-p11 by analysis of cell hybrids and transfectan...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90467-9

    authors: Feo S,Oliva D,Barbieri G,Xu WM,Fried M,Giallongo A

    更新日期:1990-01-01 00:00:00