Molecular phylogeny of mangroves. VI. Intraspecific genetic variation in mangrove species Excoecaria agallocha L. (Euphorbiaceae).

Abstract:

:Genomic DNA from 84 individuals of Excoecaria agallocha from seven mangrove populations were analysed for random amplified polymorphic DNAs (RAPDs) using 16 random 10-mer primers. Polymorphism within populations varied from 20% to 31%. At the interpopulation level, 111/149 (74%) of RAPDs were polymorphic. Restriction fragment length polymorphism (RFLP) analysis of 21 individuals (3 individuals randomly selected from the 7 populations) using 30 probe-enzyme combinations revealed a high level of interpopulation polymorphism (62.2%) indicating interpopulation genetic divergence. The polymorphic RAPDs and RFLPs were pooled, and clustering was carried out based on mean similarity for individual populations. The dendrogram showed groupings of populations from the West and East Coasts of India into separate clusters, at 60% similarity level. Further, RAPD and RFLP analysis of male and female plants showed approximately the same level of variation in both sexes, and no sex-linked markers were found. These results demonstrate that considerable intrapopulation and interpopulation genetic variations exist in E. agallocha, and that lack of genetic variation is not the reason for the morphological uniformity observed across the range of the species.

journal_name

Genome

journal_title

Genome

authors

Lakshmi M,Parani M,Ram N,Parida A

doi

10.1139/g99-109

subject

Has Abstract

pub_date

2000-02-01 00:00:00

pages

110-5

issue

1

eissn

0831-2796

issn

1480-3321

journal_volume

43

pub_type

杂志文章

相关文献

GENOME文献大全
  • The mitochondrial genome structure of the clouded leopard (Neofelis nebulosa).

    abstract::The complete 16 844 bp mitochondrial genome of Neofelis nebulosa has been sequenced and compared with the complete mitochondrial genomes of Felis catus and the Acinonyx jubatus. The base composition of the mitochondrial genome of N. nebulosa is as follows: A, 5343 bp (31.7%); C, 4441 bp (26.4%); G, 2491 bp (14.8%); T,...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-143

    authors: Wu X,Zheng T,Jiang Z,Wei L

    更新日期:2007-02-01 00:00:00

  • Quantitative trait loci on barley (Hordeum vulgare L.) chromosome 7 associated with components of winterhardiness.

    abstract::Quantitative trait loci (QTL) controlling traits associated with winterhardiness in barley (field survival, LT50, growth habit, and crown fructan content) were mapped to chromosome 7 in a population of 100 F1-derived doubled haploid lines. The largest QTL effects for all traits were detected in a 21% recombination int...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g93-009

    authors: Hayes PM,Blake T,Chen TH,Tragoonrung S,Chen F,Pan A,Liu B

    更新日期:1993-02-01 00:00:00

  • Genomic in situ hybridization analysis of Thinopyrum chromatin in a wheat-Th. intermedium partial amphiploid and six derived chromosome addition lines

    abstract::The genomic origin of alien chromosomes present in a wheat-Thinopyrum intermedium partial amphiploid TAF46 (2n = 8x = 56) and six derived chromosome addition lines were analyzed by genomic in situ hybridization (GISH) using S genomic DNA from Pseudoroegneria strigosa (2n = 2x = 14, SS) as a probe. The GISH analysis cl...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g99-090

    authors: Chen Q,Conner RL,Laroche A,Ji WQ,Armstrong KC,Fedak G

    更新日期:1999-12-01 00:00:00

  • Nonallelic noncomplementation models in mice: the first arch and lidgap-Gates mutations.

    abstract::We tested for complementation between two Mendelian mutations in mice, Far (first arch) and lgGa (lidgap-Gates). Each of these mutations gives greater than 70% risk of the birth defect, open eyelids, in homozygotes and gives little or no risk in heterozygotes. Far and lgGa are known to not be alleles; Far maps to Chr ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g98-089

    authors: Harris MJ,Juriloff DM

    更新日期:1998-12-01 00:00:00

  • Isolation and characterization of polymorphic microsatellites in Cocos nucifera L.

    abstract::Microsatellites or simple sequence repeats (SSRs) were isolated from coconut (Cocos nucifera) and tested for polymorphism on restricted germplasm. Sequencing of 197 clones from a cv. Tagnanan Tall-enriched genomic library showed that 75% contained a microsatellite, of which 64% were dinucleotide (GA/CT, CA/GT and GC/C...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g98-170

    authors: Rivera R,Edwards KJ,Barker JH,Arnold GM,Ayad G,Hodgkin T,Karp A

    更新日期:1999-08-01 00:00:00

  • Mitotic and polytene chromosome analysis in Dacus oleae (Diptera: Tephritidae).

    abstract::The present study constitutes the first attempt to construct a photographic map of the polytene chromosomes of Dacus oleae, a pest of the olive tree that causes serious financial damage in all olive oil producing countries. The map was constructed by using the larval fat body cells, the chromosomes of which are repres...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g92-056

    authors: Mavragani-Tsipidou P,Karamanlidou G,Zacharopoulou A,Koliais S,Kastritisis C

    更新日期:1992-06-01 00:00:00

  • Construction of a garlic BAC library and chromosomal assignment of BAC clones using the FISH technique.

    abstract::For molecular and cytogenetic studies, two partial bacterial artificial chromosome (BAC) libraries of the garlic cultivar Allium sativum L. 'Danyang' were constructed using high molecular weight (HMW) garlic DNA, the pBAC1-SACB1 vector, and the pIndigoBAC536 vector. The average insert size of the BAC library was about...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-012

    authors: Lee HR,Eom EM,Lim YP,Bang JW,Lee DH

    更新日期:2003-06-01 00:00:00

  • A spontaneous segmental deletion from chromosome arm 3DL enhances Fusarium head blight resistance in wheat.

    abstract::Much effort has been directed at identifying sources of resistance to Fusarium head blight (FHB) in wheat. We sought to identify molecular markers for what we hypothesized was a new major FHB resistance locus originating from the wheat cultivar 'Freedom' and introgressed into the susceptible wheat cultivar 'USU-Apogee...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2015-0088

    authors: Garvin DF,Porter H,Blankenheim ZJ,Chao S,Dill-Macky R

    更新日期:2015-11-01 00:00:00

  • Conversion of AFLP markers associated with FHB resistance in wheat into STS markers with an extension-AFLP method.

    abstract::Amplified fragment length polymorphism (AFLP) has proven a powerful tool for tagging genes or quantitative trait loci (QTLs) of interest in plants. However, conversion of AFLP markers into sequence-tagged site (STS) markers is technically challenging in wheat owing to the complicated nature of its genome. In this stud...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-022

    authors: Xu DH,Ban T

    更新日期:2004-08-01 00:00:00

  • First isolation and characterization of Brucella suis from yak.

    abstract::Brucella spp., facultative intracellular pathogens that can persistently colonize animal host cells and cause zoonosis, affect public health and safety. A Brucella strain was isolated from yak in Qinghai Province. To detect whether this isolate could cause an outbreak of brucellosis and to reveal its genetic character...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2019-0101

    authors: Yang X,Wang N,Cao X,Bie P,Xing Z,Yin S,Jiang H,Wu Q

    更新日期:2020-08-01 00:00:00

  • Genetic diversity analysis in blackgram (Vigna mungo (L.) Hepper) using AFLP and transferable microsatellite markers from azuki bean (Vigna angularis (Willd.) Ohwi & Ohashi).

    abstract::Genetic diversity in 20 elite blackgram (Vigna mungo (L.) Hepper) genotypes was studied using microsatellite and AFLP markers. Thirty-six microsatellite markers from azuki bean (Vigna angularis (Willd.) Ohwi & Ohashi) were successfully amplified across the 20 blackgram genotypes and 33 microsatellite markers showed po...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g08-107

    authors: Gupta SK,Gopalakrishna T

    更新日期:2009-02-01 00:00:00

  • Differential susceptibility of a few members of the nasuta-albomicans complex of Drosophila to paraquat-induced lethality and oxidative stress.

    abstract::The evolution of karyotypically stabilized short-lived (SL) and long-lived (LL) cytoraces in the laboratory have been established and validated through our previous lifespan studies. In the present investigation, we examined the possible reason(s) for the differential longevity among selected members of SL and LL cyto...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g11-049

    authors: Ranjini MS,Hosamani R,Muralidhara,Ramachandra NB

    更新日期:2011-10-01 00:00:00

  • Inheritance and expression patterns of BN28, a low temperature induced gene in Brassica napus, throughout the Brassicaceae.

    abstract::Molecular genetics is becoming an important tool in the breeding and selection of agronomically important traits. BN28 is a low temperature induced gene in Brassicaceae species. PCR and Southern blot analysis indicate that BN28 is polymorphic in the three diploid genomes: Brassica rapa (AA), Brassica nigra (BB), and B...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-089

    authors: Hawkins GP,Nykiforuk CL,Johnson-Flanagan AM,Boothe JG

    更新日期:1996-08-01 00:00:00

  • 5S ribosomal and U1 small nuclear RNA genes: a new linkage type in the genome of a crustacean that has three different tandemly repeated units containing 5S ribosomal DNA sequences.

    abstract::We investigated the 5S ribosomal RNA (rRNA) genes of the isopod crustacean Asellus aquaticus. Using PCR amplification, three different tandemly repeated units containing 5S rDNA were identified. Two of the three sequences were cloned and sequenced. One of them was 1842 bp and presented a 5S rRNA gene and a U1 small nu...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-44-3-331

    authors: Pelliccia F,Barzotti R,Bucciarelli E,Rocchi A

    更新日期:2001-06-01 00:00:00

  • Analysis of genetic diversity in red clover (Trifolium pratense L.) breeding populations as revealed by RAPD genetic markers.

    abstract::Red clover is an important forage legume species for temperate regions and very little is known about the genetic organization of its breeding populations. We used random amplified polymorphic DNA (RAPD) genetic markers to address the genetic diversity and the distribution of variation in 20 breeding populations and c...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g03-030

    authors: Ulloa O,Ortega F,Campos H

    更新日期:2003-08-01 00:00:00

  • Linkage and mapping analyses of the densonucleosis non-susceptible gene nsd-Z in the silkworm Bombyx mori using SSR markers.

    abstract::In the silkworm Bombyx mori, non-susceptibility to the Zhenjiang (China) strain of the densonucleosis virus (DNV-Z) is controlled by the recessive gene nsd-Z (non-susceptible to DNV-Z), which is located on chromosome 15. Owing to a lack of crossing over in females, reciprocal backcrossed F1 (BC1) progeny were used for...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-125

    authors: Li M,Guo Q,Hou C,Miao X,Xu A,Guo X,Huang Y

    更新日期:2006-04-01 00:00:00

  • Association of morphological and RFLP markers in rice (Oryza sativa L.).

    abstract::Seventeen morphological marker genes were associated with restriction fragment length polymorphism markers in rice by using four F2 populations, each segregating for a few observable traits, and 14 near isogenic lines (NILs), each containing one morphological mutant gene. The location of five genes was confirmed on th...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g95-073

    authors: Yu ZH,McCouch SR,Tanksley SD,Kinoshita T,Sato S

    更新日期:1995-06-01 00:00:00

  • Structure of Aegilops ventricosa chromosome 6Nv, the donor of wheat genes Yr17, Lr37, Sr38, and Cre5.

    abstract::An Aegilops ventricosa Tausch (2n = 28, DvDvNvNv) subtelocentric chromosome added to wheat (Triticum aestivum L.) in a disomic addition line was found to carry the genes for resistance Yr17, Lr37, Sr38, and Cre5 already transferred onto chromosome 2AS of the wheat line VPM1. Previous works demonstrated that this Ae. v...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-001

    authors: Tanguy AM,Coriton O,Abélard P,Dedryver F,Jahier J

    更新日期:2005-06-01 00:00:00

  • Genome flux in tomato cell clones cultured in vitro in different physiological equilibria. II. A RAPD analysis of variability.

    abstract::An analysis of the effect of changing physiological conditions on genome evolution in tomato cell populations has been carried out on long-term in vitro cultured clones grown on different auxin-cytokinin equilibria or selected for low-high competence for active defense against Fusarium oxysporum f.sp. lycopersici. RAP...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-107

    authors: Bogani P,Simoni A,Lio' P,Scialpi A,Buiatti M

    更新日期:1996-10-01 00:00:00

  • Three new satellite sequences and a mobile element found inside HSP70 introns of the Mediterranean mussel (Mytilus galloprovincialis).

    abstract::We report the characterization of 3 new repetitive sequences from the bivalve mollusc Mytilus galloprovincialis, designated Mg1, Mg2, and Mg3, with monomer lengths of 169, 260, and 70 bp, respectively. The 3 repeats together constitute approximately 7.8% of the M. galloprovincialis genome and were found, together with...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-111

    authors: Kourtidis A,Drosopoulou E,Pantzartzi CN,Chintiroglou CC,Scouras ZG

    更新日期:2006-11-01 00:00:00

  • Chloroplast microsatellite polymorphisms in Vitis species.

    abstract::The use of consensus chloroplast microsatellites primers for dicotyledonous chloroplast genomes revealed the existence of intra and interspecific length variation within the genus Vitis. Three chloroplast microsatellite loci were found to be polymorphic in samples of Vitis vinifera, Vitis berlandieri, Vitis riparia, a...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g02-087

    authors: Arroyo-García R,Lefort F,de Andrés MT,Ibáñaez J,Borrego J,Jouve N,Cabello F,Martínez-Zapater JM

    更新日期:2002-12-01 00:00:00

  • Genomic diversity and multiple origins of tetraploid (2n = 78, 80) Glycine tomentella.

    abstract::Among 15 wild perennial species of the genus Glycine Willd. subgenus Glycine, G. tomentella is exceptional. It is composed of four cytotypes (2n = 38, 40, 78, 80), is diverse in morphological features, and covers a wide geographical area. The objectives of this study were to uncover the genomic diversity in 78- and 80...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g94-063

    authors: Kollipara KP,Singh RJ,Hymowitz T

    更新日期:1994-06-01 00:00:00

  • New karyotypes of Atlantic tree rats, genus Phyllomys (Rodentia: Echimyidae).

    abstract::Phyllomys (Echimyidae, Rodentia) is a genus of Neotropical rodents with available cytogenetic data restricted to six out of 13 species, mainly based on simple staining methods, without detailed analyses. In this work, we present new karyotypes for Phyllomys lamarum (diploid number 2n = 56, fundamental number or number...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2013-0168

    authors: Araújo NP,Loss AC,Cordeiro-Junior DA,da Silva KR,Leite YL,Svartman M

    更新日期:2014-01-01 00:00:00

  • A comparison of RFLP maps based on anther culture derived, selfed, and hybrid progenies of Solanum chacoense.

    abstract::Comparative RFLP linkage maps were constructed using five segregating populations derived from two self-incompatible lines (termed PI 230582 and PI 458314) of diploid tuber-bearing Solanum chacoense Bitt. The analysis was based on 84 RFLP loci identified by 73 different cDNA clones. Distortion of expected Mendelian se...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-078

    authors: Rivard SR,Cappadocia M,Landry BS

    更新日期:1996-08-01 00:00:00

  • The genetic identity of alien chromosomes in potato breeding lines revealed by sequential GISH and FISH analyses using chromosome-specific cytogenetic DNA markers.

    abstract::Genomic in situ hybridization (GISH) is one of the most popular and effective techniques for detecting alien chromatin introgressed into breeding lines; however, GISH analysis alone does not reveal the genetic identity of the alien chromosomes. We previously isolated a set of bacterial artificial chromosomes (BACs) sp...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Dong F,McGrath JM,Helgeson JP,Jiang J

    更新日期:2001-08-01 00:00:00

  • Variation among the dispersed (GATA)n sequences in Drosophila melanogaster.

    abstract::Five nonallelic copies of the dispersed (GATA)n repeated sequence of Drosophila melanogaster (referred to as GATA elements) have been sequenced and analysed. The GATA elements range in size from 111 to 444 bp, consisting predominantly of tandemly repeated GATAs, interspersed with variants of the subunit. The types and...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g90-113

    authors: Simpson PR

    更新日期:1990-10-01 00:00:00

  • Whole genome sequencing of Gir cattle for identifying polymorphisms and loci under selection.

    abstract::Genetic variation in Gir cattle (Bos indicus) has so far not been well characterized. In this study, we used whole genome sequencing of three Gir bulls and a pooled sample from another 11 bulls to identify polymorphisms and loci under selection. A total of 9 990 733 single nucleotide polymorphisms (SNPs) and 604 308 i...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2013-0082

    authors: Liao X,Peng F,Forni S,McLaren D,Plastow G,Stothard P

    更新日期:2013-10-01 00:00:00

  • Increased spontaneous DNA damage in Cu/Zn superoxide dismutase (SOD1) deficient Drosophila.

    abstract::The superoxide dismutases (SODs) protect oxygen-using cells against reactive oxygen species, the potentially toxic by-products of respiration, oxidative metabolism, and radiation. We have previously shown that genetic disruption of CuZn SOD (SOD1) in Drosophila imparts a recessive phenotype of reduced lifespan, infert...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g04-083

    authors: Woodruff RC,Phillips JP,Hilliker AJ

    更新日期:2004-12-01 00:00:00

  • Identification and mapping of a third blackleg resistance locus in Brassica napus derived from B. rapa subsp. sylvestris.

    abstract::The spectrum of resistance to isolates of Leptosphaeria maculans and the map location of a new blackleg resistance gene found in the canola cultivar Brassica napus 'Surpass 400' are described. Two blackleg resistance genes, LepR1 and LepR2, from B. rapa subsp. sylvestris and introgressed in B. napus were identified pr...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g07-103

    authors: Yu F,Lydiate DJ,Rimmer SR

    更新日期:2008-01-01 00:00:00

  • Identification and characterization of the Oct4 extended transcriptional regulatory region in Guanzhong dairy goat.

    abstract::The octamer-binding transcription factor 4 gene (Oct4) plays a critical role in maintaining pluripotency during early mammalian embryonic development and self-renewal of embryonic stem (ES) cells. In this study, we cloned the Oct4 cDNA and 2.8-kb regulatory region upstream of the start codon in Guanzhong dairy goat ( ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g11-047

    authors: Cheng X,Meng S,Deng J,Lai W,Wang H

    更新日期:2011-10-01 00:00:00