Abstract:
:Porcine reproductive and respiratory syndrome virus (PRRSV) displays notorious genetic, antigenic, and clinical variability. Little is known, however, about the nature and extent of viral variation present within naturally infected animals. By amplifying and cloning the open reading frame 5 gene from tonsils of naturally infected swine, and by sequencing individual clones, we characterized viral diversity in nine animals from two farms. All animals harbored multiple PRRSV variants at both the nucleic and the amino acid levels. Structural variation and rates of synonymous and nonsynonymous nucleotide substitution were no different within known epitopes than elsewhere. Analysis of molecular variance indicated that differences between farms, among animals within farms, and within individual animals accounted for 92.94, 3.84, and 3.22% of the total viral genetic variability observed, respectively. PRRSV exists during natural infection as a quasispecies distribution of related genotypes. Positive natural selection for immune evasiveness does not appear to maintain this diversity.
journal_name
Virologyjournal_title
Virologyauthors
Goldberg TL,Lowe JF,Milburn SM,Firkins LDdoi
10.1016/j.virol.2003.07.009subject
Has Abstractpub_date
2003-12-20 00:00:00pages
197-207issue
2eissn
0042-6822issn
1096-0341pii
S0042682203006044journal_volume
317pub_type
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