Abstract：
:Reversible protein phosphorylation is a signaling mechanism involved in all cellular processes. To create a systems view of the signaling apparatus in budding yeast, we generated an epistatic miniarray profile (E-MAP) comprised of 100,000 pairwise, quantitative genetic interactions, including virtually all protein and small-molecule kinases and phosphatases as well as key cellular regulators. Quantitative genetic interaction mapping reveals factors working in compensatory pathways (negative genetic interactions) or those operating in linear pathways (positive genetic interactions). We found an enrichment of positive genetic interactions between kinases, phosphatases, and their substrates. In addition, we assembled a higher-order map from sets of three genes that display strong interactions with one another: triplets enriched for functional connectivity. The resulting network view provides insights into signaling pathway regulation and reveals a link between the cell-cycle kinase, Cak1, the Fus3 MAP kinase, and a pathway that regulates chromatin integrity during transcription by RNA polymerase II.
journal_name
Celljournal_title
Cellauthors
Fiedler D,Braberg H,Mehta M,Chechik G,Cagney G,Mukherjee P,Silva AC,Shales M,Collins SR,van Wageningen S,Kemmeren P,Holstege FC,Weissman JS,Keogh MC,Koller D,Shokat KM,Krogan NJdoi
10.1016/j.cell.2008.12.039subject
Has Abstractpub_date
2009-03-06 00:00:00pages
952-63issue
5eissn
0092-8674issn
1097-4172pii
S0092-8674(09)00002-6journal_volume
136pub_type
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