Abstract:
:Single Nucleotide Polymorphism (SNP) is one of the important molecular markers widely used in animal breeding program for improvement of any desirable genetic traits. Considering this, the present study was carried out to identify, annotate and analyze the SNPs related to four important traits of buffalo viz. milk volume, age at first calving, post-partum cyclicity and feed conversion efficiency. We identified 246,495, 168,202, 74,136 and 194,747 genome-wide SNPs related to mentioned traits, respectively using ddRAD sequencing technique based on 85 samples of Murrah Buffaloes. Distribution of these SNPs were highest (61.69%) and lowest (1.78%) in intron and exon regions, respectively. Under coding regions, the SNPs for the four traits were further classified as synonymous (4697) and non-synonymous (3827). Moreover, Gene Ontology (GO) terms of identified genes assigned to various traits. These characterized SNPs will enhance the knowledge of cellular mechanism for enhancing productivity of water buffalo through molecular breeding.
journal_name
Genomicsjournal_title
Genomicsauthors
Mishra DC,Sikka P,Yadav S,Bhati J,Paul SS,Jerome A,Singh I,Nath A,Budhlakoti N,Rao AR,Rai A,Chaturvedi KKdoi
10.1016/j.ygeno.2020.04.012subject
Has Abstractpub_date
2020-09-01 00:00:00pages
3571-3578issue
5eissn
0888-7543issn
1089-8646pii
S0888-7543(19)30682-2journal_volume
112pub_type
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