Physical mapping of genetic markers on the short arm of chromosome 5.

Abstract:

:The deletion of the short arm of chromosome 5 is associated with the cri-du-chat syndrome. In addition, loss of this portion of a chromosome is a common cytogenetic marker in a number of malignancies. However, to date, no genes associated with these disorders have been identified. Physical maps are the first step in isolating causative genes, and genes involved in autosomal recessive disorders are now routinely mapped through the identification of linked markers. Extensive genetic maps based upon polymorphic short tandem repeats (STRs) have provided researchers with a large number of markers to which such disorders can be genetically mapped. However, the physical locations of many of these STRs have not been determined. Toward the goal of integrating the human genetic maps with the physical maps, a 5p somatic cell hybrid deletion mapping panel that was derived from patients with 5p deletions or translocations was used to physically map 47 STRs that have been used to construct genetic maps of 5p. These data will be useful in the localization of disease genes that map to 5p and may be involved in the etiology of the cri-du-chat syndrome.

journal_name

Genomics

journal_title

Genomics

authors

Gersh M,Goodart SA,Overhauser J

doi

10.1006/geno.1994.1668

subject

Has Abstract

pub_date

1994-12-01 00:00:00

pages

577-9

issue

3

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(84)71668-5

journal_volume

24

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • Rapid expansion of the Ly49 gene cluster in rat.

    abstract::The cytotoxic activity of mouse natural killer cells is regulated in part through cell surface molecules belonging to the Ly49 multigene family. In mice, the genomic sequence of the Ly49 gene cluster has been examined in detail and this analysis provided a model of the expansion of this multigene family. In the presen...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.01.010

    authors: Wilhelm BT,Mager DL

    更新日期:2004-07-01 00:00:00

  • In situ mapping of the gene coding for a leucine zipper DNA binding protein (CDR62) to 16p12-16p13.1.

    abstract::A cDNA clone encoding the major antigen (CDR62) associated with the antibody-induced paraneoplastic cerebellar degeneration has been used to identify the chromosomal location of the corresponding structural gene(s) by screening for its retention in a panel of rodent-human somatic cell hybrids. Having established the s...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90063-x

    authors: Gress T,Baldini A,Rocchi M,Furneaux H,Posner JB,Siniscalco M

    更新日期:1992-08-01 00:00:00

  • Genomic structure and chromosomal localization of the mouse LIM domain-binding protein 1 gene, Ldb1.

    abstract::The LIM domain is a structural motif that is well conserved throughout evolution in a variety of factors known to play important roles in development and cell regulation. Ldb genes encode LIM domain-binding (Ldb) factors. Here we report on the structural organization and chromosomal localization of the mouse Ldb1 gene...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.5163

    authors: Yamashita T,Agulnick AD,Copeland NG,Gilbert DJ,Jenkins NA,Westphal H

    更新日期:1998-02-15 00:00:00

  • The gene encoding a cationic amino acid transporter (SLC7A4) maps to the region deleted in the velocardiofacial syndrome.

    abstract::By screening an expressed sequence tag database, we identified a novel human gene, SLC7A4, encoding a solute carrier family 7 [cationic amino acid (CAA) CAT-4 transporter, y+ system] member 4. The SLC7A4 cDNA is 2325 nt long and includes 78, 1911, and 336 nt in the 5' noncoding, coding, and 3'-noncoding regions, respe...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5252

    authors: Sperandeo MP,Borsani G,Incerti B,Zollo M,Rossi E,Zuffardi O,Castaldo P,Taglialatela M,Andria G,Sebastio G

    更新日期:1998-04-15 00:00:00

  • The gene for murine CTP:phosphocholine cytidylyltransferase (Ctpct) is located on mouse chromosome 16.

    abstract::CTP:phosphocholine cytidylyltransferase is the rate-controlling enzyme in phosphatidylcholine biosynthesis and is essential for the survival of eukaryotic cells. The murine cDNA for the cytidylyltransferase was cloned and sequenced. A genomic clone was isolated and the chromosomal location of the Ctpct locus determine...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/s0888-7543(05)80377-5

    authors: Rutherford MS,Rock CO,Jenkins NA,Gilbert DJ,Tessner TG,Copeland NG,Jackowski S

    更新日期:1993-12-01 00:00:00

  • SCOPE++: sequence classification of homoPolymer emissions.

    abstract:BACKGROUND:mRNA polyadenylation, the addition of a poly(A) tail to the 3'-end of pre-mRNA, is a process critical to gene expression and regulation in eukaryotes. To understand the molecular mechanisms governing polyadenylation and other relevant biological processes, it is important to identify these poly(A) tails accu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2014.07.005

    authors: Morton JT,Abrudan P,Figueroa N,Liang C,Karro JE

    更新日期:2014-09-01 00:00:00

  • Structure, chromosomal locus, and promoter of mouse Hes2 gene, a homologue of Drosophila hairy and Enhancer of split.

    abstract::Hes2 encodes a mammalian basic helix-loop-helix transcriptional repressor homologous to the products of Drosophila hairy and Enhancer of split. Here, we isolated and characterized the mouse Hes2 gene. This gene consists of four exons, and all the introns are located within the protein-coding region at positions homolo...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5213

    authors: Nishimura M,Isaka F,Ishibashi M,Tomita K,Tsuda H,Nakanishi S,Kageyama R

    更新日期:1998-04-01 00:00:00

  • Cloning and characterization of human erythroid membrane-associated protein, human ERMAP.

    abstract::We describe here the cloning and characterization of the human gene ERMAP, identified by subtractive hybridization using early and late gestation human fetal liver. By in situ hybridization, we found human ERMAP to be expressed not only in erythoid cells in fetal liver and adult bone marrow, but also in reticulocytes ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6600

    authors: Xu H,Foltz L,Sha Y,Madlansacay MR,Cain C,Lindemann G,Vargas J,Nagy D,Harriman B,Mahoney W,Schueler PA

    更新日期:2001-08-01 00:00:00

  • Characterization of a region-specific library of microclones in the vicinity of the Bcg and splotch loci on mouse chromosome 1.

    abstract::The proximal portion of mouse chromosome 1 harbors a variety of mutant loci that have yet to be characterized at the molecular level. We have constructed a library of genomic DNA fragments from the proximal portion of mouse chromosome 1 by microdissection and microcloning techniques, with the aim of generating genetic...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1029

    authors: Epstein DJ,Bardeesy N,Vidal S,Malo D,Weith A,Vekemans M,Gros P

    更新日期:1994-01-01 00:00:00

  • Human SLUG gene organization, expression, and chromosome map location on 8q.

    abstract::SLUG is a member of the snail family of zinc finger proteins. It is involved in epithelial to mesenchyme cell transition during neurulation and plays a role in limb bud development. We have isolated and described the human SLUG gene by sequencing a region spanning 4034 bp. The human SLUG gene contains three exons. The...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5367

    authors: Cohen ME,Yin M,Paznekas WA,Schertzer M,Wood S,Jabs EW

    更新日期:1998-08-01 00:00:00

  • Comparative genome analysis and characterization of a MDR Klebsiella variicola.

    abstract::Klebsiella variicola is an emerging pathogen responsible for causing blood-stream infections, urinary and respiratory tract related diseases in humans. In this report, we describe the genome sequence data and phenotypic characterization of K. variicola strain KV093 isolated from India. Comparative genome sequence anal...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.06.004

    authors: Srinivasan VB,Rajamohan G

    更新日期:2020-09-01 00:00:00

  • Four ubiquitously expressed genes, RD (D6S45)-SKI2W (SKIV2L)-DOM3Z-RP1 (D6S60E), are present between complement component genes factor B and C4 in the class III region of the HLA.

    abstract::The association of the HLA class III region with many diseases motivates the investigation of unidentified genes in the 30-kb segment between complement component genes Bf and C4. RD, which codes for a putative RNA binding protein, is 205 bp downstream of Bf. SKI2W (HGMW-approved symbol SKIV2L), a DEVH-box gene probab...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5499

    authors: Yang Z,Shen L,Dangel AW,Wu LC,Yu CY

    更新日期:1998-11-01 00:00:00

  • Sequence analysis of 139 kb in Xp22.1 containing spermine synthase and the 5' region of PEX.

    abstract::Human Xp22.1 contains genes involved in mineral balance that are implicated in X-linked hypophosphatemia (XLH) in humans, its murine homologue (Hyp), and another distinct murine hypophosphatemic disorder (Gy). In XLH, a gene, PEX, has been found to be mutated in up to 83% of patients but the sequences of the promoter ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4876

    authors: Grieff M,Whyte MP,Thakker RV,Mazzarella R

    更新日期:1997-09-01 00:00:00

  • HIVID: an efficient method to detect HBV integration using low coverage sequencing.

    abstract::We reported HIVID (high-throughput Viral Integration Detection), a novel experimental and computational method to detect the location of Hepatitis B Virus (HBV) integration breakpoints in Hepatocellular Carcinoma (HCC) genome. In this method, the fragments with HBV sequence were enriched by a set of HBV probes and the...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2013.07.002

    authors: Li W,Zeng X,Lee NP,Liu X,Chen S,Guo B,Yi S,Zhuang X,Chen F,Wang G,Poon RT,Fan ST,Mao M,Li Y,Li S,Wang J,Jianwang,Xu X,Jiang H,Zhang X

    更新日期:2013-10-01 00:00:00

  • Solh, the mouse homologue of the Drosophila melanogaster small optic lobes gene: organization, chromosomal mapping, and localization of gene product to the olfactory bulb.

    abstract::The Drosophila melanogaster small optic lobes gene (sol) is required for normal development of the neuropiles of the medulla and lobula complexes of the adult optic lobes. The predicted protein products of sol and its human homologue SOLH contain zinc-finger-like repeats, a calpain-like protease domain, and a C-termin...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.6098

    authors: Kamei M,Webb GC,Heydon K,Hendry IA,Young IG,Campbell HD

    更新日期:2000-02-15 00:00:00

  • Retrotransposon insertions in rice gene pairs associated with reduced conservation of gene pairs in grass genomes.

    abstract::Small-scale changes in gene order and orientation are common in plant genomes, even across relatively short evolutionary distances. We investigated the association of retrotransposons in and near rice gene pairs with gene pair conservation, inversion, rearrangement, and deletion in sorghum, maize, and Brachypodium. Co...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2012.02.006

    authors: Krom N,Ramakrishna W

    更新日期:2012-05-01 00:00:00

  • Construction and characterization of a NotI-BsuE linking library from the human X chromosome.

    abstract::We describe the construction and characterization of methylation-resistant sequence-tagged NotI linking clones specific for the X chromosome, referred to as NotI-BsuE linking clones. The approach consists of methylating the X-chromosome-specific cloned DNA with BsuE methylase (M. BsuE), an enzyme that methylates the f...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90108-q

    authors: Arenstorf HP,Kandpal RP,Baskaran N,Parimoo S,Tanaka Y,Kitajima S,Yasukochi Y,Weissman SM

    更新日期:1991-09-01 00:00:00

  • Identification of new translocation breakpoints at 12q13 in lipomas.

    abstract::Cytogenetic studies of banded chromosomes and fluorescence in situ hybridization (FISH) of several yeast artificial chromosomes (YACs) that are part of a 128-kb resolution physical map of a portion of 12q13 revealed that 4/14 (28%) lipomas have breakpoints in 12q13. These breakpoints are more than 10 Mb away from the ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4993

    authors: Merscher S,Marondel I,Pedeutour F,Gaudray P,Kucherlapati R,Turc-Carel C

    更新日期:1997-11-15 00:00:00

  • Use of denaturing gradient gel electrophoresis to detect point mutations in the factor VIII gene.

    abstract::Point mutations in the factor VIII gene are responsible for the majority of cases of hemophilia A, and only a small fraction of these mutations can be recognized by restriction endonuclease analysis. We have now used polymerase chain reaction and denaturing gradient gel electrophoresis to characterize single nucleotid...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(90)90569-g

    authors: Traystman MD,Higuchi M,Kasper CK,Antonarakis SE,Kazazian HH Jr

    更新日期:1990-02-01 00:00:00

  • Improved gene targeting in C. elegans using counter-selection and Flp-mediated marker excision.

    abstract::Gene targeting is widely used for the precise manipulation of genes. However, in the model organism Caenorhabditis elegans non-transposon mediated gene targeting remains laborious, and as a result has not been widely used. One obstacle to the wider use of this approach is the difficulty of identifying homologous recom...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2009.09.001

    authors: Vázquez-Manrique RP,Legg JC,Olofsson B,Ly S,Baylis HA

    更新日期:2010-01-01 00:00:00

  • Mapping and characterization of non-HLA multigene assemblages in the human MHC class I region.

    abstract::The major histocompatibility complex (MHC) class I region has been shown to be associated with a variety of immune and nonimmune disorders. In an effort to initiate steps designed to identify the idiopathic hemochromatosis disease gene (HFE), we have cloned and mapped two expressed messages using probes from the HLA-H...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1382

    authors: Venditti CP,Harris JM,Geraghty DE,Chorney MJ

    更新日期:1994-07-15 00:00:00

  • Non-coding RNAs: The key detectors and regulators in cardiovascular disease.

    abstract::Cardiovascular disease (CVD) is an important cause of disease-related death worldwide. One of its main pathological bases is imbalances in gene expression. Non-coding RNAs are a class of transcripts that do not encode proteins. They include microRNA (miRNA), long noncoding RNA (lncRNA) and circular RNA (circRNA). They...

    journal_title:Genomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.ygeno.2020.10.024

    authors: Zhu L,Li N,Sun L,Zheng D,Shao G

    更新日期:2020-10-22 00:00:00

  • Comparative analysis of neurological disorders focuses genome-wide search for autism genes.

    abstract::The behaviors of autism overlap with a diverse array of other neurological disorders, suggesting common molecular mechanisms. We conducted a large comparative analysis of the network of genes linked to autism with those of 432 other neurological diseases to circumscribe a multi-disorder subcomponent of autism. We leve...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.09.015

    authors: Wall DP,Esteban FJ,Deluca TF,Huyck M,Monaghan T,Velez de Mendizabal N,Goñí J,Kohane IS

    更新日期:2009-02-01 00:00:00

  • Microarray analysis of gene expression profile in resistant and susceptible Bombyx mori strains reveals resistance-related genes to nucleopolyhedrovirus.

    abstract::To investigate the molecular mechanism of silkworm resistance to BmNPV infection, we constructed a near-isogenic line (BC8) with BmNPV resistance using highly resistant (NB) and highly susceptible parental strains (306). We investigated variations in the gene expression in the midguts of BmNPV-infected BC8 and 306 at ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2013.02.004

    authors: Zhou Y,Gao L,Shi H,Xia H,Gao L,Lian C,Chen L,Yao Q,Chen K,Liu X

    更新日期:2013-04-01 00:00:00

  • Mouse lipocortin I gene structure and chromosomal assignment: gene duplication and the origins of a gene family.

    abstract::Using cDNA probes obtained from library screening and anchored polymerase chain reaction, we have isolated and characterized three overlapping mouse genomic clones that contain the mouse lipocortin I (Lipo I) structural gene. Restriction enzyme mapping, Southern blotting, and DNA sequencing were carried out on the clo...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90321-5

    authors: Horlick KR,Cheng IC,Wong WT,Wakeland EK,Nick HS

    更新日期:1991-06-01 00:00:00

  • Positional cloning of the Ttc7 gene required for normal iron homeostasis and mutated in hea and fsn anemia mice.

    abstract::Genes playing essential roles in iron homeostasis have yet to be identified. We report the discovery of a strong candidate gene affecting iron homeostasis in two allelic anemia mouse mutants: hea (hereditary erythroblastic anemia) and fsn (flaky skin). To clone this novel gene positionally, we established a large back...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.11.008

    authors: White RA,McNulty SG,Nsumu NN,Boydston LA,Brewer BP,Shimizu K

    更新日期:2005-03-01 00:00:00

  • Identification of a psoriasis susceptibility candidate gene by linkage disequilibrium mapping with a localized single nucleotide polymorphism map.

    abstract::Psoriasis is a chronic inflammatory disease of the skin with both genetic and environmental risk factors. Here we describe the creation of a single-nucleotide polymorphism (SNP) map spanning 900-1200 kb of chromosome 3q21, which had been previously recognized as containing a psoriasis susceptibility locus, PSORS5. We ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2002.6720

    authors: Hewett D,Samuelsson L,Polding J,Enlund F,Smart D,Cantone K,See CG,Chadha S,Inerot A,Enerback C,Montgomery D,Christodolou C,Robinson P,Matthews P,Plumpton M,Wahlstrom J,Swanbeck G,Martinsson T,Roses A,Riley J,Purvi

    更新日期:2002-03-01 00:00:00

  • Accurate characterization of porcine bivariate flow karyotype by PCR and fluorescence in situ hybridization.

    abstract::The 19 chromosomal pairs of the swine karyotype are resolved into 18 peaks denoted A to Q and Y by dual-beam flow cytometry. The chromosomal content of six peaks has previously been determined by analyzing male/female differences, karyotypes of animals carrying translocations, and PCR studies of genes with known assig...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1146

    authors: Yerle M,Schmitz A,Milan D,Chaput B,Monteagudo L,Vaiman M,Frelat G,Gellin J

    更新日期:1993-04-01 00:00:00

  • A 3-Mb map of a large Segmental duplication overlapping the alpha7-nicotinic acetylcholine receptor gene (CHRNA7) at human 15q13-q14.

    abstract::Several neuropsychiatric disorders map to human 15q13-q14, which contains a strong candidate in the alpha7-nicotinic acetylcholine receptor subunit gene (CHRNA7) and is partly duplicated, complicating further genetic analysis. We have shown that the partial duplication is in a hybrid (CHRFAM7A)between CHRNA7 and one o...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2002.6694

    authors: Riley B,Williamson M,Collier D,Wilkie H,Makoff A

    更新日期:2002-02-01 00:00:00

  • Association of a polymorphism of ABCB1 with obesity in Japanese individuals.

    abstract::The aim of the present study was to identify gene polymorphisms that confer susceptibility to obesity. A total of 5448 unrelated Japanese individuals from two independent populations were examined: subject panel A comprised 4252 individuals who visited participating hospitals; subject panel B comprised 1196 community-...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.03.004

    authors: Ichihara S,Yamada Y,Kato K,Hibino T,Yokoi K,Matsuo H,Kojima T,Watanabe S,Metoki N,Yoshida H,Satoh K,Aoyagi Y,Yasunaga A,Park H,Tanaka M,Nozawa Y

    更新日期:2008-06-01 00:00:00