Characterization of a region-specific library of microclones in the vicinity of the Bcg and splotch loci on mouse chromosome 1.

Abstract:

:The proximal portion of mouse chromosome 1 harbors a variety of mutant loci that have yet to be characterized at the molecular level. We have constructed a library of genomic DNA fragments from the proximal portion of mouse chromosome 1 by microdissection and microcloning techniques, with the aim of generating genetic markers in close proximity to some of these mutant loci. To facilitate the genetic mapping of 27 microclones from this library, we divided a 56-cM segment of chromosome 1 between the Col3a1 and Ren 1,2 genes into eight intervals defined by anchor loci. Restriction fragment length polymorphisms were determined for each of the microclones and their segregation with the anchor loci was followed in informative animals from a panel of 252 interspecific backcross mice (C57BL/6J x Mus spretus) x C57BL/6J. We were able to assign 26 of 27 (96%) randomly selected microclones to each of the defined chromosome 1 intervals. A total of eight microclones mapped within the large interstitial deletion found in the Spr mouse mutant. Two of these clones were found to be tightly linked to the host resistance locus Bcg and at least one was found to be linked to the neural tube defect mutant splotch. Other clones mapped to intervals containing several other mouse mutants. These novel DNA markers should aid in positional cloning strategies presently employed to identify these mutant loci. These clones should also be useful in the creation of both physical and YAC contiguous maps of the proximal portion of mouse chromosome 1.

journal_name

Genomics

journal_title

Genomics

authors

Epstein DJ,Bardeesy N,Vidal S,Malo D,Weith A,Vekemans M,Gros P

doi

10.1006/geno.1994.1029

subject

Has Abstract

pub_date

1994-01-01 00:00:00

pages

163-6

issue

1

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(84)71029-9

journal_volume

19

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • An integrated physical map of 210 markers assigned to the short arm of human chromosome 11.

    abstract::Using a panel of patient cell lines with chromosomal breakpoints, we constructed a physical map for the short arm of human chromosome 11. We focused on 11p15, a chromosome band harboring at least 25 known genes and associated with the Beckwith-Wiedemann syndrome, several childhood tumors, and genomic imprinting. This ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1312

    authors: Redeker E,Hoovers JM,Alders M,van Moorsel CJ,Ivens AC,Gregory S,Kalikin L,Bliek J,de Galan L,van den Bogaard R

    更新日期:1994-06-01 00:00:00

  • Isolation and regional assignment of human chromosome 12p cDNAs.

    abstract::We have characterized 117 cDNAs isolated by direct cDNA selection using pools of human chromosome 12p cosmids. Sequencing revealed that 41 clones did overlap with other cDNAs. Of the remaining 76 cDNA sequences, 11 matched previously identified human chromosome 12p genes and 3 matched previously determined cDNA sequen...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1213

    authors: Baens M,Aerssens J,van Zand K,Van den Berghe H,Marynen P

    更新日期:1995-09-01 00:00:00

  • Cytological characterization of the tandem repetitive sequences and their methylation status in the Antirrhinum majus genome.

    abstract::Tandem repetitive sequences are DNA motifs common in the genomes of eukaryotic species and are often embedded in heterochromatic regions. In most eukaryotes, ribosomal genes, as well as centromeres and telomeres or subtelomeres, are associated with abundant tandem arrays of repetitive sequences and typically represent...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2008.04.008

    authors: Zhang D,Yang Q,Ding Y,Cao X,Xue Y,Cheng Z

    更新日期:2008-08-01 00:00:00

  • Chromosomal localization of the gastric and brain receptors for cholecystokinin (CCKAR and CCKBR) in human and mouse.

    abstract::Receptors for cholcystokinin (CCK) can be pharmacologically classified into at least two distinct subtypes, CCKAR and CCKBR. In an effort to determine whether the CCKA and CCKB receptors may be associated with certain CNS or gastrointestinal diseases, we have localized and compared the human and mouse chromosomal loci...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(95)80018-h

    authors: Huppi K,Siwarski D,Pisegna JR,Wank S

    更新日期:1995-02-10 00:00:00

  • Localization of the zinc finger DNA-binding protein HIV-EP1/MBP-1/PRDII-BF1 to human chromosome 6p22.3-p24.

    abstract::A variety of cellular proteins have been found to bind to related DNA sequences in the enhancer elements of the human immunodeficiency virus, the kappa immunoglobulin gene, the class I major histocompatibility complex gene, and the beta-interferon gene. Recently, lambda gt11 gene expression cloning using ligated oligo...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(91)90371-k

    authors: Gaynor RB,Muchardt C,Diep A,Mohandas TK,Sparkes RS,Lusis AJ

    更新日期:1991-04-01 00:00:00

  • Identification and partial characterization of a candidate gene for X-linked retinopathies using a lateral approach.

    abstract::Using library to library cross-screening we have identified a number of genomic clones that harbor X-linked sequences expressed in the human choroid/retina. We describe the characterization of one of these, designated XEH.8 (DXS542), which is localized to Xp11.3-q12. Isolation, partial sequencing, and Northern analysi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1096

    authors: Wong P,MacDonald IM,Sood R,Smith C,Pilon R,Tenniswood M

    更新日期:1993-03-01 00:00:00

  • Mapping on human and mouse chromosomes of the gene for the beta-galactoside-binding protein, an autocrine-negative growth factor.

    abstract::The structural gene for beta-galactoside-binding protein (Lgals-1), a cell growth regulatory molecule and cystostatic factor, is assigned to the E-region of mouse chromosome 15 and to the region q12-q13.1 of human chromosome 22. The evolutionary conservation of these two regions has been previously suggested from comp...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1039

    authors: Baldini A,Gress T,Patel K,Muresu R,Chiariotti L,Williamson P,Boyd Y,Casciano I,Wells V,Bruni CB

    更新日期:1993-01-01 00:00:00

  • Identification of two novel proteins that interact with germ-cell-specific RNA-binding proteins DAZ and DAZL1.

    abstract::The human DAZ (deleted in azoospermia) gene family on the Y chromosome and an autosomal DAZ-like gene, DAZL1, encode RNA-binding proteins that are expressed exclusively in germ cells. Their role in spermatogenesis is supported by their homology with a Drosophila male infertility gene boule and sterility of Daz11 knock...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6169

    authors: Tsui S,Dai T,Roettger S,Schempp W,Salido EC,Yen PH

    更新日期:2000-05-01 00:00:00

  • A PstI polymorphism for the human erythrocyte surface protein band 3 (EPB3) demonstrates close linkage of EPB3 to the nerve growth factor receptor.

    abstract::Erythrocyte surface protein band 3 (EPB3) plays an important role in CO2 transport in the blood. We have isolated a recombinant lambda bacteriophage that contains coding sequence for the human gene. Sequence analysis demonstrated that the human insert contains a portion of exon 13. A 1.1-kb BamHI fragment revealed a t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90034-7

    authors: Stewart EA,Kopito R,Bowcock AM

    更新日期:1989-10-01 00:00:00

  • Molecular cloning and characterization of canine ICOS.

    abstract::Inducible costimulatory receptor (ICOS) is one recently identified member of the CD28 family of costimulatory molecules. Evidence suggests ICOS functions as a critical immune regulator and, to evaluate these effects, we employed the canine model system that has been used to develop strategies currently in clinical use...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.06.009

    authors: Lee JH,Joo YD,Yim D,Lee R,Ostrander EA,Loretz C,Little MT,Storb R,Kuhr CS

    更新日期:2004-10-01 00:00:00

  • Chromosomal localization of a new mouse lens opacity gene (lop18)

    abstract::Examination of mouse strains with a slit lamp and indirect ophthalmoscopy revealed that strain CBA/CaGnLe has a white cataract obvious at weaning age. It soon progresses to a large white nuclear cataract with mild cortical changes. Crosses with C57BL/6J showed that this is inherited as a single recessive fully penetra...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0439

    authors: Chang B,Hawes NL,Smith RS,Heckenlively JR,Davisson MT,Roderick TH

    更新日期:1996-08-15 00:00:00

  • The alpha-fetoprotein promoter is the target of Afr1-mediated postnatal repression.

    abstract::The alpha-fetoprotein (AFP) gene is transcribed at high levels in the fetal liver and is repressed at birth, leading to low but detectable levels of AFP mRNA in the adult liver. This repression is regulated, in part, by a locus that is unlinked to AFP called Alpha-fetoprotein regulator 1 (Afr1). Previous studies showe...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.6073

    authors: Peyton DK,Huang MC,Giglia MA,Hughes NK,Spear BT

    更新日期:2000-01-15 00:00:00

  • Cloning, structural organization, and chromosomal mapping of the human phenol sulfotransferase STP2 gene.

    abstract::Phenol- and monoamine-metabolizing sulfotransferases (STP and STM, respectively) are members of a superfamily of enzymes that add sulfate to a variety of xenobiotics and endobiotics containing hydroxyl or amino functional groups. To characterize related sulfotransferase genes further, we used extra-long PCR (XL-PCR) t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.4575

    authors: Gaedigk A,Beatty BG,Grant DM

    更新日期:1997-03-01 00:00:00

  • Temporal correlation between transcriptional changes and increased synthesis of hyaluronan in experimental cardiac hypertrophy.

    abstract::The role of hyaluronan in cardiac growth has become evident, previously shown by increased myocardial levels of hyaluronan in a rat model of cardiac hypertrophy. To further investigate the role of hyaluronan and regulation of its synthesis in cardiac hypertrophy, quantitative measurements of myocardial hyaluronan conc...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2010.04.003

    authors: Hellman U,Mörner S,Engström-Laurent A,Samuel JL,Waldenström A

    更新日期:2010-08-01 00:00:00

  • Molecular cloning of two cannabinoid type 1-like receptor genes from the puffer fish Fugu rubripes.

    abstract::The puffer fish, Fugu rubripes (Fugu), has been proposed as a model vertebrate genome. We have characterized two putative G-protein-coupled receptor encoding genes, FCB1A and FCB1B, obtained by degenerate PCR and low-stringency hybridization of a Fugu genomic library. These two genes show high homology to the human ca...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0406

    authors: Yamaguchi F,Macrae AD,Brenner S

    更新日期:1996-08-01 00:00:00

  • Experimental and bioinformatic characterisation of the promoter region of the Marfan syndrome gene, FBN1.

    abstract::Mutations in the FBN1 gene, encoding the extracellular matrix protein fibrillin-1, result in the dominant connective tissue disease Marfan syndrome. Marfan syndrome has a variable phenotype, even within families carrying the same FBN1 mutation. Differences in gene expression resulting from sequence differences in the ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2009.06.005

    authors: Summers KM,Bokil NJ,Baisden JM,West MJ,Sweet MJ,Raggatt LJ,Hume DA

    更新日期:2009-10-01 00:00:00

  • MSG1 (melanocyte-specific gene 1): mapping to chromosome Xq13.1, genomic organization, and promoter analysis.

    abstract::MSG1 (melanocyte-specific gene 1) is a recently isolated gene predominantly expressed in cultured normal melanocytes and pigmented melanoma cells. MSG1 encodes a 27-kDa nuclear protein that has strong intrinsic transcriptional transactivating activity. In this report, the human MSG1 gene was mapped to chromosome Xq13....

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1998.5383

    authors: Fenner MH,Parrish JE,Boyd Y,Reed V,MacDonald M,Nelson DL,Isselbacher KJ,Shioda T

    更新日期:1998-08-01 00:00:00

  • Multiple MSP pseudogenes in a local repeat cluster on 1p36.2: An expanding genomic graveyard?

    abstract::Chromosomal region 1p36.2 harbors an intriguing gene cluster of about 1 Mb. In addition to normal high-copy-number repeats, this cluster consists entirely of locally repeated sequences among which there are tRNA and small nuclear RNA (snRNA) genes. In 23 PACs and YACs from the 1p36.2 cluster, we identified eight diffe...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5972

    authors: van der Drift P,Chan A,Zehetner G,Westerveld A,Versteeg R

    更新日期:1999-11-15 00:00:00

  • Whole-genome methylation profiling from PBMCs in acute-exacerbation COPD patients with good and poor responses to corticosteroid treatment.

    abstract::Identifying heterogeneity in chronic obstructive pulmonary disease (COPD) phenotypes is important for the development of personalized medicine. Genome-wide analysis was used to compare the methylation levels of peripheral blood mononuclear cell (PBMC) samples from 24 acute-exacerbation (AE) COPD patients with good/poo...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2018.09.010

    authors: Lee SW,Hwang HH,Hsu PW,Chuang TY,Liu CW,Wu LS

    更新日期:2019-12-01 00:00:00

  • Pathogenic 12-kb copy-neutral inversion in syndromic intellectual disability identified by high-fidelity long-read sequencing.

    abstract::We report monozygotic twin girls with syndromic intellectual disability who underwent exome sequencing but with negative pathogenic variants. To search for variants that are unrecognized by exome sequencing, high-fidelity long-read genome sequencing (HiFi LR-GS) was applied. A 12-kb copy-neutral inversion was precisel...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.10.038

    authors: Mizuguchi T,Okamoto N,Yanagihara K,Miyatake S,Uchiyama Y,Tsuchida N,Hamanaka K,Fujita A,Miyake N,Matsumoto N

    更新日期:2020-11-04 00:00:00

  • Effects of genome architecture and epigenetic factors on susceptibility of promoter CpG islands to aberrant DNA methylation induction.

    abstract::Aberrant DNA methylation is induced at specific promoter CpG islands (CGIs) in contrast with mutations. The specificity is influenced by genome architecture and epigenetic factors, but their relationship is still unknown. In this study, we isolated promoter CGIs susceptible and resistant to aberrant methylation induct...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2011.06.003

    authors: Takeshima H,Yamashita S,Shimazu T,Ushijima T

    更新日期:2011-09-01 00:00:00

  • Integration of multi-objective PSO based feature selection and node centrality for medical datasets.

    abstract::In the past decades, the rapid growth of computer and database technologies has led to the rapid growth of large-scale medical datasets. On the other, medical applications with high dimensional datasets that require high speed and accuracy are rapidly increasing. One of the dimensionality reduction approaches is featu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.07.027

    authors: Rostami M,Forouzandeh S,Berahmand K,Soltani M

    更新日期:2020-11-01 00:00:00

  • The frequency and position of Alu repeats in cDNAs, as determined by database searching.

    abstract::The Alu repeat sequence is estimated to account for 5% of human genomic DNA. The precise relationship of Alu sequences to human fully spliced cDNA has yet to be determined, although many new protocols for cloning cDNAs either depend on the presence of Alus or--more usually--rely on their absence in a population of mes...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1090

    authors: Yulug IG,Yulug A,Fisher EM

    更新日期:1995-06-10 00:00:00

  • Identification of a doublet missense substitution in the bovine LRP4 gene as a candidate causal mutation for syndactyly in Holstein cattle.

    abstract::Syndactyly in Holstein cattle is an autosomal recessive abnormality characterized by the fusion of the functional digits. This disorder has been previously mapped to the telomeric part of bovine chromosome 15. Here, we describe the fine-mapping of syndactyly in Holstein cattle to a 3.5-Mb critical interval using a com...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2006.05.007

    authors: Duchesne A,Gautier M,Chadi S,Grohs C,Floriot S,Gallard Y,Caste G,Ducos A,Eggen A

    更新日期:2006-11-01 00:00:00

  • Rapid expansion of the Ly49 gene cluster in rat.

    abstract::The cytotoxic activity of mouse natural killer cells is regulated in part through cell surface molecules belonging to the Ly49 multigene family. In mice, the genomic sequence of the Ly49 gene cluster has been examined in detail and this analysis provided a model of the expansion of this multigene family. In the presen...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.01.010

    authors: Wilhelm BT,Mager DL

    更新日期:2004-07-01 00:00:00

  • The gene for the human putative apoE receptor is on chromosome 12 in the segment q13-14.

    abstract::We have previously described the cDNA coding for a new lipoprotein receptor that contains domains closely related to the ligand-binding domain of the LDL receptor. We have now investigated the localization of the gene for this new receptor by hybridization of the cDNA to panels of rodent cells containing subsets of hu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90087-6

    authors: Myklebost O,Arheden K,Rogne S,Geurts van Kessel A,Mandahl N,Herz J,Stanley K,Heim S,Mitelman F

    更新日期:1989-07-01 00:00:00

  • Significant evidence for linkage of mite-sensitive childhood asthma to chromosome 5q31-q33 near the interleukin 12 B locus by a genome-wide search in Japanese families.

    abstract::Childhood-onset asthma is frequently found in association with atopy. Although asthmatic children may develop IgE antibodies against variety of allergens, asthma is associated primarily with allergy to house-dust mites, molds, or other allergens. In this study, we conducted a genome-wide linkage search in 47 Japanese ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2000.6201

    authors: Yokouchi Y,Nukaga Y,Shibasaki M,Noguchi E,Kimura K,Ito S,Nishihara M,Yamakawa-Kobayashi K,Takeda K,Imoto N,Ichikawa K,Matsui A,Hamaguchi H,Arinami T

    更新日期:2000-06-01 00:00:00

  • RNA-Seq profiling reveals the plant hormones and molecular mechanisms stimulating the early ripening in apple.

    abstract::Fruit development and ripening are essential components of human and animal diets. Fruit ripening is also a vital plant trait for plant shelf life at the commercial level. In the present study, two apple cultivars, Hanfu wild (HC) and Hanfu mutant (HM), were employed for RNA-Sequencing (RNA-Seq) to explore the genes i...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2020.09.040

    authors: Nawaz I,Tariq R,Nazir T,Khan I,Basit A,Gul H,Anwar T,Awan SA,Bacha SAS,Zhang L,Zhang C,Cong P

    更新日期:2020-09-20 00:00:00

  • Structure and evolution of the human prosaposin chromosomal gene.

    abstract::The gene for prosaposin was characterized by sequence analysis of chromosomal DNA to gain insight into the evolution of this locus that encodes four highly conserved sphingolipid activator proteins or saposins. The 13 exons ranged in size from 57 to 1200 bp, while the introns were from 91 to 3812 bp in length. The reg...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90247-p

    authors: Rorman EG,Scheinker V,Grabowski GA

    更新日期:1992-06-01 00:00:00

  • Molecular characterization of human neogenin, a DCC-related protein, and the mapping of its gene (NEO1) to chromosomal position 15q22.3-q23.

    abstract::Neogenin was first identified in the chick embryo, and like a number of cell surface proteins of the immunoglobulin (Ig) superfamily, including N-CAM and L1 (generally called cell adhesion molecules or CAMs), it is expressed on growing nerve cells in the developing nervous system of vertebrate embryos. Neogenin is als...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4688

    authors: Vielmetter J,Chen XN,Miskevich F,Lane RP,Yamakawa K,Korenberg JR,Dreyer WJ

    更新日期:1997-05-01 00:00:00