Study on the correlation between soil microbial diversity and ambient environmental factors influencing the safflower distribution in Xinjiang.

Abstract:

:The effects of soil microbial properties and physiographical factors on safflower distributions in the main safflower plantations of Xinjiang province in China were studied. This study may help determine the basis of the environmental factors for evaluating the geoherbalism of this medicinal plant. The soil microbial biodiversity in the bulk soil and rhizosphere of safflower at different growth stages and from different sampling plots were characterized by analyzing the environmental DNAs in the samples. With general primers targeting the 16S ribosomal DNA for bacteria and the internal transcribed spacer 1 gene for fungi, the study was performed using marker gene amplification coupled with Illumina HiSeq high-throughput sequencing technologies. Correlation analysis and a distance-based redundancy analysis were performed to determine the dominant factors affecting the distribution of the microorganism in safflower soils. A total of 16517 bacterial operational taxonomic units (OTUs) were obtained from all the 108 soil samples of nine safflower sampling plots. At the phylum level, 48 phyla have been identified with Actinobacteria (32.9%) and proteobacteria (28.7%) being predominant. For fungi, 8746 OTUs were obtained, which belonged to seven phyla with Ascomycota overwhelmingly superior in relative abundance. A significant positive correlation was found between soil microbe quantity and ASL (above sea level). Safflower was sensitive to changes in elevation, growing more abundantly in the mountainous regions at heights of around 1,200 m above sea level. It is concluded that the dominant factors affecting the distribution of microorganisms in safflower soils were soil moisture, available N, and ASL.

journal_name

J Basic Microbiol

authors

Liu Y,Zhang X,Yang ML,Wang SM

doi

10.1002/jobm.201900626

subject

Has Abstract

pub_date

2020-06-01 00:00:00

pages

517-531

issue

6

eissn

0233-111X

issn

1521-4028

journal_volume

60

pub_type

杂志文章
  • Cadmium-induced changes in the production of siderophores by a plant growth promoting strain of Pseudomonas fulva.

    abstract::The impact of increasing Cd2+ exposure on the quality and quantity of siderophores produced by a plant growth promoting Pseudomonas fulva strain was tested to gain insight into the degree of change. P. fulva was cultured in the increasing concentrations of Cd2+ (0, 0.5, 1.0, 2.0 mM). The secreted siderophores were sep...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201800034

    authors: Thiem D,Złoch M,Gadzała-Kopciuch R,Szymańska S,Baum C,Hrynkiewicz K

    更新日期:2018-07-01 00:00:00

  • Structural diversity and efficacy of culturable cellulose decomposing bacteria isolated from rice-pulse resource conservation practices.

    abstract::The diversity of cellulolytic bacteria from the rice-pulse system can be sourced for identification of efficient cellulose decomposing microbial strains. In the present study, the abundance, structural diversity, and cellulolytic potential of the culturable bacterial community were studied in 5-year old rice-pulse sys...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201900275

    authors: Dash PK,Bhattacharyya P,Shahid M,Roy PS,Padhy SR,Swain CK,Kumar U,Kumar A,Gautam P,Lal B,Panneerselvam P,Nayak AK

    更新日期:2019-10-01 00:00:00

  • Stress and development in Dictyostelium discoideum: the involvement of the catalytic calcineurin A subunit.

    abstract::Calcium signaling is one of the most important signaling-pathways in all eukaryotes. One important target activated by an increased intracellular calcium concentration via calmodulin is the protein phosphatase calcineurin, which is composed of a catalytic subunit (calcineurin A) and a regulatory subunit (calcineurin B...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201200574

    authors: Thewes S,Schubert SK,Park K,Mutzel R

    更新日期:2014-06-01 00:00:00

  • Targeting VEGFR2 protein by marine Streptomyces globosus VITLGK011-derived compound BECA: An in vitro and in silico analysis.

    abstract::This study investigates the anticancer cytotoxic mechanism of action of benzoyloxy-ethyl-carbamic acid (BECA) produced by Streptomyces globosus VITLGK011. Flow cytometry analysis confirmed that BECA (at IC50 : 3.12 µg/ml) treatment for 24 h induced apoptosis in 60% of cells. Schrodinger Maestro tools such as QikProp a...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.202000461

    authors: Lokesh R,Jeyakanthan J,Kannabiran K

    更新日期:2020-11-01 00:00:00

  • High Archaea diversity in Varvara hot spring, Bulgaria.

    abstract::The phylogeny of the latest recognized domain, Archaea, is still complicated and it is largely based on environmental sequences. A culture independent molecular phylogenetic analysis revealed high Archaea diversity in a terrestrial hot spring, village Varvara, Bulgaria. A total of 35 archaeal operational taxonomic uni...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201000160

    authors: Ivanova I,Atanassov I,Lyutskanova D,Stoilova-Disheva M,Dimitrova D,Tomova I,Derekova A,Radeva G,Buchvarova V,Kambourova M

    更新日期:2011-04-01 00:00:00

  • The demosponge Halichondria (Halichondria) panicea (Pallas, 1766) as a novel source of biosurfactant-producing bacteria.

    abstract::The Mediterranean sponge Halichondria (Halichondria) panicea was explored as a novel matrix for the isolation of biosurfactant-producing bacteria. A total of 38 (out of 56) isolates gave a good response to the employed screening tests (e.g., stable emulsion detection, surface tension measurement, hemolytic activity, a...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201700669

    authors: Rizzo C,Syldatk C,Hausmann R,Gerçe B,Longo C,Papale M,Conte A,De Domenico E,Michaud L,Lo Giudice A

    更新日期:2018-06-01 00:00:00

  • Evaluation of SDS-polyacrylamide gel systems for the study of outer membrane protein profiles of clinical strains of Acinetobacter baumannii.

    abstract::The outer membrane protein (OMP) profiles of 23 blood isolates of Acinetobacter baumannii representing all the different antimicrobial susceptibility patterns observed during a 3-year period in a Spanish hospital were studied. OMPs extracted from envelopes of sonicated cells after solubilisation with 2% of N-lauryl-sa...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.200390022

    authors: Cuenca FF,Pascual A,Martínez Marínez L,Conejo MC,Perea EJ

    更新日期:2003-01-01 00:00:00

  • Extracellular lipase of an entomopathogenic fungus effecting larvae of a scale insect.

    abstract::Lipases play an important role in the infection process of entomopathogenic fungi by hydrolyzing the ester bonds of lipoproteins, fats and waxes present on the insect surface and in the body. Here we report the purification and characterization of an extracellular lipase from Isaria fumosorosea. The enzyme was purifie...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201300813

    authors: Ali S,Ren S,Huang Z

    更新日期:2014-11-01 00:00:00

  • Protein turnover analysis in Salmonella Typhimurium during infection by dynamic SILAC, Topograph, and quantitative proteomics.

    abstract::Protein turnover affects protein abundance and phenotypes. Comprehensive investigation of protein turnover dynamics has the potential to provide substantial information about gene expression. Here we report a large-scale protein turnover study in Salmonella Typhimurium during infection by quantitative proteomics. Muri...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201500315

    authors: Wang Z,Han QQ,Zhou MT,Chen X,Guo L

    更新日期:2016-07-01 00:00:00

  • New shuttle vectors for Rhodococcus sp. R312 (formerly Brevibacterium sp. R312), a nitrile hydratase producing strain.

    abstract::Two shuttle vectors named pRC52 (10.7 Kb) and pRK52 (12.2 Kb) carrying chloramphenicol (Cm) and chloramphenicol plus kanamycin (Km) resistance genes, respectively, were constructed by fusion of a cryptic plasmid pBL13869 (replicon pBL1, 5.8 Kb) from Brevibacterium lactofermentum ATCC13869 with pBR328 E. coli plasmid. ...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:

    authors: Duran R

    更新日期:1998-01-01 00:00:00

  • Isolation of a FAD-GPDH gene encoding a mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase from Dunaliella salina.

    abstract::The mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase (FAD-GPDH), recently reported in plants, has been detailed in yeast and animal systems. It oxidizes glycerol-3-phosphate (G-3-P) to dihydroxyacetone phosphate (DHAP) on the outer surface of mitochondrial inner membrane. A cDNA encoding the Dunaliella s...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.200610263

    authors: Yang W,Cao Y,Sun X,Huang F,He Q,Qiao D,Bai L

    更新日期:2007-06-01 00:00:00

  • Quorum-quenching endophytic bacteria inhibit disease caused by Pseudomonas syringae pv. syringae in Citrus cultivars.

    abstract::Two strains of 64 endophytic bacteria, Bacillus cereus Si-Ps1 and Pseudomonas azotoformans La-Pot3-3, isolated from Citrus sinensis and C. sinensis var. Thomson's leaves, respectively, reduced N-acyl homoserine-based quorum sensing in bioindicator strain Pseudomonas syringae pv. syringae (Pss) B728a and the biofilm pr...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.202000038

    authors: Akbari Kiarood SL,Rahnama K,Golmohammadi M,Nasrollanejad S

    更新日期:2020-09-01 00:00:00

  • Biosynthetic energy cost of potentially highly expressed proteins vary with niche in selected actinobacteria.

    abstract::Amino acid and protein biosynthesis requires a number of high energy phosphate bonds and includes a dual energy cost for the synthesis of chemical intermediates during the fueling reactions and the conversion of precursor molecules to final products. One popular hypothesis is that the proteins encoded by putative high...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201700350

    authors: Sarkar I,Tisa LS,Gtari M,Sen A

    更新日期:2018-02-01 00:00:00

  • Isolation and characterization of arsenic resistant Geobacillus kaustophilus strain from geothermal soils.

    abstract::A thermophilic, arsenate resistant bacterial strain was isolated from a geothermal field located in the area surrounding Monterotondo (Tuscany, Italy). Based on 16S rRNA gene analysis and recN comparisons the strain was identified as Geobacillus kaustophilus. Cells of the strain, designated A1, were rod-shaped, 2-3 μm...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201000314

    authors: Cuebas M,Sannino D,Bini E

    更新日期:2011-08-01 00:00:00

  • Rock inhabiting potassium solubilizing bacteria from Kerala, India: characterization and possibility in chemical K fertilizer substitution.

    abstract::The role of rock inhabiting bacteria in potassium (K) solubilization from feldspar and their application in crop nutrition through substitution of fertilizer K was explored through the isolation of 36 different bacteria from rocks of a major hill station at Ponmudi in Thiruvananthapuram, Kerala, India. A comprehensive...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201500139

    authors: Anjanadevi IP,John NS,John KS,Jeeva ML,Misra RS

    更新日期:2016-01-01 00:00:00

  • Development of an efficient host-vector system of Ruminiclostridium josui.

    abstract::Although Ruminiclostridium josui (formerly Clostridium josui), a strictly anaerobic mesophilic cellulolytic bacterium, is a promising candidate for biomass utilization via consolidated bioprocessing, its host-vector system has not yet been established. The existence of a restriction and modification system is a signif...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201700620

    authors: Wang Y,Okugawa K,Kunitake E,Sakka M,Kimura T,Sakka K

    更新日期:2018-05-01 00:00:00

  • Molecular cloning and functional characterization of a Δ6-fatty acid desaturase gene from Rhizopus oryzae.

    abstract::The objective was to screen for and isolate a novel enzyme with the specific activity of a Δ6-fatty acid desaturase from Rhizopus oryzae. In this study, R. oryzae was identified as a novel fungal species that produces large amounts of γ-linolenic acid. A full-length cDNA, designated here as RoD6D, with high homology t...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201200189

    authors: Zhu Y,Zhang BB

    更新日期:2013-09-01 00:00:00

  • Transposons: the agents of antibiotic resistance in bacteria.

    abstract::Transposons are a group of mobile genetic elements that are defined as a DNA sequence. Transposons can jump into different places of the genome; for this reason, they are called jumping genes. However, some transposons are always kept at the insertion site in the genome. Most transposons are inactivated and as a resul...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章,评审

    doi:10.1002/jobm.201800204

    authors: Babakhani S,Oloomi M

    更新日期:2018-11-01 00:00:00

  • Qualitative and quantitative changes in beta-1,4-glucosidase accompanying growth of Aspergillus nidulans.

    abstract::A comparative study of the wild type A. nidulans and a mutant strain aco-T69 (lacking conidia and cleistothecia) revealed the better production of beta-1,4-glucosidase in the former. The relative distribution of the enzyme levels in various morphological structures viz. somatic hyphae, spores and cleistothecia also sh...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.3620300513

    authors: Sharma S,Bagga PS,Sandhu DK

    更新日期:1990-01-01 00:00:00

  • CcpA and three newly identified proteins are involved in biofilm development in Lactobacillus plantarum.

    abstract::The aim of this study was to identify genes involved in biofilm development in the probiotic lactic acid bacterium Lactobacillus plantarum. The ability of L. plantarum LM3 and of some derivative mutant strains to form biofilm has been investigated. Biofilm microtitre plate assays showed that L. plantarum LM3-2, carryi...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201100456

    authors: Muscariello L,Marino C,Capri U,Vastano V,Marasco R,Sacco M

    更新日期:2013-01-01 00:00:00

  • Metabolism of benzonitrile by Cryptococcus sp. UFMG-Y28.

    abstract::The yeast Cryptococcus sp. UFMG-Y28 can utilize benzonitrile as a nitrogen and possible additional carbon source. The kinetics of growth on Yeast Carbon Base (YCB) added of benzonitrile as sole nitrogen source showed that benzonitrile was metabolized to benzoic acid and ammonia. Liquid chromatography analysis indicate...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/1521-4028(200012)40:5/6<389::aid-jobm389>3

    authors: Rezende RP,Dias JC,Ferraz V,Linardi VR

    更新日期:2000-01-01 00:00:00

  • Analysis of genome sequence and trehalose lipid production peculiarities of the thermotolerant Gordonia strain.

    abstract::Gordoniae are one of the most promising hydrocarbon-oxidizing actinobacteria. Here we present the genome sequence analysis of thermotolerant strain Gordonia sp. 1D isolated from oil-refinery soil. It is capable of alkane consumption and biosurfactant production at temperatures of up to 50°C. Gordonia sp. 1D demonstrat...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201900439

    authors: Delegan Y,Sargsyan A,Hovhannisyan N,Babayan B,Petrikov K,Vainstein M

    更新日期:2020-01-01 00:00:00

  • Alternative method of inoculum and spawn production for the cultivation of the edible brazilian mushroom Pleurotus ostreatoroseus SING.

    abstract::Efficiency of solid and liquid inocula and their use for spawn production were compared so that improved cultivation conditions for the edible mushroom Pleurotus ostreatoroseus could be tested. Solid and liquid inocula were prepared respectively with Potato Dextrose Agar (PDA) and Liquid Potato Dextrose (LPD). Wheat g...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/1521-4028(200203)42:1<37::AID-JOBM37>3.0.C

    authors: Rosado FR,Kemmelmeier C,Da Costa SM

    更新日期:2002-01-01 00:00:00

  • Interference of chromium with biological systems in yeasts and fungi: a review.

    abstract::This paper deals with the interactions of chromium (Cr) with biological systems, focusing in particular on yeasts and fungi. These interactions are analysed with primarily regard to biochemical functions, but higher levels of organization are also considered. Thus, the morphological and cytological characteristics of ...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章,评审

    doi:10.1002/jobm.200900170

    authors: Poljsak B,Pócsi I,Raspor P,Pesti M

    更新日期:2010-02-01 00:00:00

  • Biocontrol ability of killer yeasts (Saccharomyces cerevisiae) isolated from wine against Colletotrichum gloeosporioides on grape.

    abstract::A total of 216 killer yeasts Saccharomyces cerevisiae, isolated from wine, were evaluated in controlling Colletotrichum gloeosporioides, a pre-harvest anthracnose agent of grape. Three of these yeast isolates were tested positive for antagonizing C. gloeosporioides and were further evaluated for their mechanisms as bi...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201700264

    authors: Liu Z,Du S,Ren Y,Liu Y

    更新日期:2018-01-01 00:00:00

  • Regulation of L-carnitine metabolism in Escherichia coli.

    abstract::The metabolization of L-carnitine was studied using whole cells of Escherichia coli 044 K74. It showed features of an epigenetical control. L-carnitine and crotonobetaine were able to induce the carnitine-reducing system. Oxygen and nitrate as electron acceptors, gamma-butyrobetaine as final product of carnitine trans...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.3620270303

    authors: Jung K,Jung H,Kleber HP

    更新日期:1987-01-01 00:00:00

  • Effect of sub-lethal doses of vancomycin and oxacillin on biofilm formation by vancomycin intermediate resistant Staphylococcus aureus.

    abstract::Biofilms are means of protection to bacteria against antibiotics and antibodies. Catheters and others tube devices used by patients are prone to accumulation of thick layers of biofilms as hiding place for etiologic agents, resulting in substantial morbidity and mortality. Methicillin-resistant Staphylococcus aureus (...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201000221

    authors: Mirani ZA,Jamil N

    更新日期:2011-04-01 00:00:00

  • Type IV pili of Acidithiobacillus ferrooxidans can transfer electrons from extracellular electron donors.

    abstract::Studies on Acidithiobacillus ferrooxidans accepting electrons from Fe(II) have previously focused on cytochrome c. However, we have discovered that, besides cytochrome c, type IV pili (Tfp) can transfer electrons. Here, we report conduction by Tfp of A. ferrooxidans analyzed with a conducting-probe atomic force micros...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201200300

    authors: Li Y,Li H

    更新日期:2014-03-01 00:00:00

  • Biodegradation analysis of polyvinyl alcohol during the compost burial course.

    abstract::To discuss the microbial structure that develops during the course of compost burials of polyvinyl alcohol (PVA)-based material and analyze the effect of the degree of PVA alcoholysis on the PVA-degrading ability of each strain. Two bacterial strains exhibiting a high level of PVA-degrading ability and two mixed cultu...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201800468

    authors: Liu Y,Deng Y,Chen P,Duan M,Lin X,Zhang Y

    更新日期:2019-04-01 00:00:00

  • Optimization of different process variables for the production of an indolizidine alkaloid, swainsonine from Metarhizium anisopliae.

    abstract::Swainsonine is a polyhydroxylated indolizidine alkaloid having anticancer, antimetastatic, antiproliferative and immunomodulatory activities and also potential therapeutic applications against AIDS. In the present study, ten isolates of M. anisopliae were screened and enzyme assayed for the production of swainsonine i...

    journal_title:Journal of basic microbiology

    pub_type: 杂志文章

    doi:10.1002/jobm.201100255

    authors: Singh D,Kaur G

    更新日期:2012-10-01 00:00:00