Proteomic and transcriptomic analysis of visual long-term memory in Drosophila melanogaster.

Abstract:

:The fruit fly, Drosophila melanogaster, is able to discriminate visual landmarks and form visual long-term memory in a flight simulator. Studies focused on the molecular mechanism of long-term memory have shown that memory formation requires mRNA transcription and protein synthesis. However, little is known about the molecular mechanisms underlying the visual learning paradigm. The present study demonstrated that both spaced training procedure (STP) and consecutive training procedure (CTP) would induce long-term memory at 12 hour after training, and STP caused significantly higher 12-h memory scores compared with CTP. Label-free quantification of liquid chromatography-tandem mass spectrometry (LC-MS/MS) and microarray were utilized to analyze proteomic and transcriptomic differences between the STP and CTP groups. Proteomic analysis revealed 30 up-regulated and 27 down-regulated proteins; Transcriptomic analysis revealed 145 up-regulated and 129 down-regulated genes. Among them, five candidate genes were verified by quantitative PCR, which revealed results similar to microarray. These results provide insight into the molecular components influencing visual long-term memory and facilitate further studies on the roles of identified genes in memory formation.

journal_name

Protein Cell

journal_title

Protein & cell

authors

Jiang H,Hou Q,Gong Z,Liu L

doi

10.1007/s13238-011-1019-0

subject

Has Abstract

pub_date

2011-03-01 00:00:00

pages

215-22

issue

3

eissn

1674-800X

issn

1674-8018

journal_volume

2

pub_type

杂志文章
  • Multifaceted functions of Siva-1: more than an Indian God of Destruction.

    abstract::Siva-1, as a p53-inducible gene, has been shown to induce extensive apoptosis in a number of different cell lines. Recent evidence suggests that Siva-1 functions as a part of the auto-regulatory feedback loop that restrains p53 through facilitating Mdm2-mediated p53 degradation. Also, Siva-1 plays an important role in...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-012-2018-5

    authors: Mei Y,Wu M

    更新日期:2012-02-01 00:00:00

  • UV-B-induced photomorphogenesis in Arabidopsis.

    abstract::Ultraviolet-B (UV-B) is a relatively minor component of sunlight, but can induce stress-related physiological processes or UV-B-specific photomorphogenic responses in plants. In the last decade, significant progress has been made in understanding the UV-B photomorphogenic pathway, including identification of the key c...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-013-3036-7

    authors: Li J,Yang L,Jin D,Nezames CD,Terzaghi W,Deng XW

    更新日期:2013-07-01 00:00:00

  • Identification of arylamine N-acetyltransferase inhibitors as an approach towards novel anti-tuberculars.

    abstract::New anti-tubercular drugs and drug targets are urgently needed to reduce the time for treatment and also to identify agents that will be effective against Mycobacterium tuberculosis persisting intracellularly. Mycobacteria have a unique cell wall. Deletion of the gene for arylamine N-acetyltransferase (NAT) decreases ...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-010-0006-1

    authors: Westwood IM,Bhakta S,Russell AJ,Fullam E,Anderton MC,Kawamura A,Mulvaney AW,Vickers RJ,Bhowruth V,Besra GS,Lalvani A,Davies SG,Sim E

    更新日期:2010-01-01 00:00:00

  • Cells derived from iPSC can be immunogenic - yes or no?

    abstract::The induced pluripotent stem cells (iPSCs), derived by ectopic expression of reprogramming factors in somatic cells, can potentially provide unlimited autologous cells for regenerative medicine. In theory, the autologous cells derived from patient iPSCs should be immune tolerant by the host without any immune rejectio...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-013-0003-2

    authors: Cao J,Li X,Lu X,Zhang C,Yu H,Zhao T

    更新日期:2014-01-01 00:00:00

  • An inducible CRISPR-ON system for controllable gene activation in human pluripotent stem cells.

    abstract::Human pluripotent stem cells (hPSCs) are an important system to study early human development, model human diseases, and develop cell replacement therapies. However, genetic manipulation of hPSCs is challenging and a method to simultaneously activate multiple genomic sites in a controllable manner is sorely needed. He...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-016-0360-8

    authors: Guo J,Ma D,Huang R,Ming J,Ye M,Kee K,Xie Z,Na J

    更新日期:2017-05-01 00:00:00

  • The role of Smad7 in oral mucositis.

    abstract::Oral mucositis, a severe oral ulceration, is a common toxic effect of radio- or chemoradio-therapy and a limiting factor to using the maximum dose of radiation for effective cancer treatment. Among cancer patients, at least 40% and up to 70%, of individuals treated with standard chemotherapy regimens or upper-body rad...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-014-0130-4

    authors: Bian L,Han G,Zhao CW,Garl PJ,Wang XJ

    更新日期:2015-03-01 00:00:00

  • Polycomb repressive complex 2 in embryonic stem cells: an overview.

    abstract::Polycomb Group Proteins (PcG) are a family of epigenetic regulators responsible for the repression of an array of genes important in development and cell fate specification. PcG proteins complex to form two types of epigenetic regulators: Polycomb Repressive Complex 1 and 2 (PRC1 and PRC2). Although the mechanisms reg...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-010-0142-7

    authors: Jones A,Wang H

    更新日期:2010-12-01 00:00:00

  • Overexpression of sigma-1 receptor inhibits ADAM10 and ADAM17 mediated shedding in vitro.

    abstract::The sigma-1 receptor is a molecular chaperone protein highly enriched in the brain. Recent studies linked it to many diseases, such as drug addition, Alzheimer's disease, stroke, depression, and even cancer. Sigma-1 receptor is enriched in lipid rafts, which are membrane microdomains essential in signaling processes. ...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-012-2006-9

    authors: Li J,Liu B,Gao X,Ma Z,CaoSong T,Mei YA,Zheng Y

    更新日期:2012-02-01 00:00:00

  • Dephosphorylation of cGAS by PPP6C impairs its substrate binding activity and innate antiviral response.

    abstract::The cyclic GMP-AMP (cGAMP) synthase (cGAS) plays a critical role in host defense by sensing cytosolic DNA derived from microbial pathogens or mis-located cellular DNA. Upon DNA binding, cGAS utilizes GTP and ATP as substrates to synthesize cGAMP, leading to MITA-mediated innate immune response. In this study, we ident...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-020-00729-3

    authors: Li M,Shu HB

    更新日期:2020-08-01 00:00:00

  • Phage display screening of therapeutic peptide for cancer targeting and therapy.

    abstract::Recently, phage display technology has been announced as the recipient of Nobel Prize in Chemistry 2018. Phage display technique allows high affinity target-binding peptides to be selected from a complex mixture pool of billions of displayed peptides on phage in a combinatorial library and could be further enriched th...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-019-0639-7

    authors: Saw PE,Song EW

    更新日期:2019-11-01 00:00:00

  • SNObase, a database for S-nitrosation modification.

    abstract::S-Nitros(yl)ation is a ubiquitous redox-based post-translational modification of protein cysteine thiols by nitric oxide or its derivatives, which transduces the bioactivity of nitric oxide (NO) by regulation of protein conformation, activity, stability, localization and protein-protein interactions. These years, more...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-012-2094-6

    authors: Zhang X,Huang B,Zhang L,Zhang Y,Zhao Y,Guo X,Qiao X,Chen C

    更新日期:2012-12-01 00:00:00

  • New discovery rarely runs smooth: an update on progranulin/TNFR interactions.

    abstract::Progranulin (PGRN) is a growth factor implicated in various pathophysiological processes, including wound healing, inflammation, tumorigenesis, and neurodegeneration. It was previously reported that PGRN binds to tumor necrosis factor receptors (TNFR) and has therapeutic effects in inflammatory arthritis (Tang et. al,...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-015-0213-x

    authors: Wang BC,Liu H,Talwar A,Jian J

    更新日期:2015-11-01 00:00:00

  • Mechanism involved in the modulation of photoreceptor-specific cyclic nucleotidegated channel by the tyrosine kinase adapter protein Grb14.

    abstract::We recently found that growth factor receptor-bound (Grb) protein 14 is a novel physiological modulator of photoreceptor specific cyclic nucleotide-gated channel alpha subunit (CNGA1). Grb14 promotes the CNG channel closure through its Ras-associating (RA) domain. In the current study we show that this RA domain-media...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-011-1115-1

    authors: Gupta VK,Rajala A,Rodgers KK,Rajala RV

    更新日期:2011-11-01 00:00:00

  • Effect of the microbial lipopeptide on tumor cell lines: apoptosis induced by disturbing the fatty acid composition of cell membrane.

    abstract::Microbial lipopeptides play an important role in apoptosis induction of tumor cells. However, there is little knowledge about the relationship between apoptosis induction and membrane fatty acids. The present study focused on the effects of lipopeptides produced by Bacillus subtilis HSO121 on Bcap-37 cell lines. 3-(4,...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-010-0072-4

    authors: Liu X,Tao X,Zou A,Yang S,Zhang L,Mu B

    更新日期:2010-06-01 00:00:00

  • Core pluripotency factors promote glycolysis of human embryonic stem cells by activating GLUT1 enhancer.

    abstract::Human embryonic stem cells (hESCs) depend on glycolysis for energy and substrates for biosynthesis. To understand the mechanisms governing the metabolism of hESCs, we investigated the transcriptional regulation of glucose transporter 1 (GLUT1, SLC2A1), a key glycolytic gene to maintain pluripotency. By combining the g...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-019-0637-9

    authors: Yu L,Ji KY,Zhang J,Xu Y,Ying Y,Mai T,Xu S,Zhang QB,Yao KT,Xu Y

    更新日期:2019-09-01 00:00:00

  • Structures of the N- and C-terminal domains of MHV-A59 nucleocapsid protein corroborate a conserved RNA-protein binding mechanism in coronavirus.

    abstract::Coronaviruses are the causative agent of respiratory and enteric diseases in animals and humans. One example is SARS, which caused a worldwide health threat in 2003. In coronaviruses, the structural protein N (nucleocapsid protein) associates with the viral RNA to form the filamentous nucleocapsid and plays a crucial ...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-010-0079-x

    authors: Ma Y,Tong X,Xu X,Li X,Lou Z,Rao Z

    更新日期:2010-07-01 00:00:00

  • Inhibition of p53 and/or AKT as a new therapeutic approach specifically targeting ALT cancers.

    abstract::While the majority of all human cancers counteract telomere shortening by expressing telomerase, ~15% of all cancers maintain telomere length by a telomerase-independent mechanism known as alternative lengthening of telomeres (ALT). Here, we show that high load of intrinsic DNA damage is present in ALT cancer cells, l...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-019-0634-z

    authors: Ge Y,Wu S,Zhang Z,Li X,Li F,Yan S,Liu H,Huang J,Zhao Y

    更新日期:2019-11-01 00:00:00

  • Structural dynamics of the yeast Shwachman-Diamond syndrome protein (Sdo1) on the ribosome and its implication in the 60S subunit maturation.

    abstract::The human Shwachman-Diamond syndrome (SDS) is an autosomal recessive disease caused by mutations in a highly conserved ribosome assembly factor SBDS. The functional role of SBDS is to cooperate with another assembly factor, elongation factor 1-like (Efl1), to promote the release of eukaryotic initiation factor 6 (eIF6...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-015-0242-5

    authors: Ma C,Yan K,Tan D,Li N,Zhang Y,Yuan Y,Li Z,Dong MQ,Lei J,Gao N

    更新日期:2016-03-01 00:00:00

  • Molecular mechanisms for survival regulation of chronic myeloid leukemia stem cells.

    abstract::Studies on chronic myeloid leukemia (CML) have served as a paradigm for cancer research and therapy. These studies involve the identification of the first cancer-associated chromosomal abnormality and the subsequent development of tyrosine kinase inhibitors (TKIs) that inhibit BCR-ABL kinase activity in CML. It become...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-013-2115-0

    authors: Zhang H,Li S

    更新日期:2013-03-01 00:00:00

  • Atg7 in development and disease: panacea or Pandora's Box?

    abstract::Macroautophagy is an evolutionarily conserved intracellular degradation system used by life ranging from yeasts to mammals. The core autophagic machinery is composed of ATG (autophagy-related) protein constituents. One particular member of the ATG protein family, Atg7, has been the focus of recent research. Atg7 acts ...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-015-0195-8

    authors: Xiong J

    更新日期:2015-10-01 00:00:00

  • Novel and potent inhibitors targeting DHODH are broad-spectrum antivirals against RNA viruses including newly-emerged coronavirus SARS-CoV-2.

    abstract::Emerging and re-emerging RNA viruses occasionally cause epidemics and pandemics worldwide, such as the on-going outbreak of the novel coronavirus SARS-CoV-2. Herein, we identified two potent inhibitors of human DHODH, S312 and S416, with favorable drug-likeness and pharmacokinetic profiles, which all showed broad-spec...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-020-00768-w

    authors: Xiong R,Zhang L,Li S,Sun Y,Ding M,Wang Y,Zhao Y,Wu Y,Shang W,Jiang X,Shan J,Shen Z,Tong Y,Xu L,Chen Y,Liu Y,Zou G,Lavillete D,Zhao Z,Wang R,Zhu L,Xiao G,Lan K,Li H,Xu K

    更新日期:2020-10-01 00:00:00

  • Arrestins: structural disorder creates rich functionality.

    abstract::Arrestins are soluble relatively small 44-46 kDa proteins that specifically bind hundreds of active phosphorylated GPCRs and dozens of non-receptor partners. There are binding partners that demonstrate preference for each of the known arrestin conformations: free, receptor-bound, and microtubule-bound. Recent evidence...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-017-0501-8

    authors: Gurevich VV,Gurevich EV,Uversky VN

    更新日期:2018-12-01 00:00:00

  • Formation and regulation of Yersinia biofilms.

    abstract::Flea-borne transmission is a recent evolutionary adaptation that distinguishes the deadly Yersinia pestis from its progenitor Y. Pseudotuberculosis, a mild pathogen transmitted via the food-borne route. Y. Pestis synthesizes biofilms in the flea gut, which is important for fleaborne transmission. Yersinia biofilms are...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-011-1024-3

    authors: Zhou D,Yang R

    更新日期:2011-03-01 00:00:00

  • Human BDCA2+CD123+CD56+ dendritic cells (DCs) related to blastic plasmacytoid dendritic cell neoplasm represent a unique myeloid DC subset.

    abstract::Dendritic cells (DCs) comprise two functionally distinct subsets: plasmacytoid DCs (pDCs) and myeloid DCs (mDCs). pDCs are specialized in rapid and massive secretion of type I interferon (IFN-I) in response to nucleic acids through Toll like receptor (TLR)-7 or TLR-9. In this report, we characterized a CD56(+) DC popu...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-015-0140-x

    authors: Yu H,Zhang P,Yin X,Yin Z,Shi Q,Cui Y,Liu G,Wang S,Piccaluga PP,Jiang T,Zhang L

    更新日期:2015-04-01 00:00:00

  • Extracellular signal regulated kinase 5 promotes cell migration, invasion and lung metastasis in a FAK-dependent manner.

    abstract::This study was designed to evaluate ERK5 expression in lung cancer and malignant melanoma progression and to ascertain the involvement of ERK5 signaling in lung cancer and melanoma. We show that ERK5 expression is abundant in human lung cancer samples, and elevated ERK5 expression in lung cancer was linked to the acqu...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-020-00701-1

    authors: Jiang W,Cai F,Xu H,Lu Y,Chen J,Liu J,Cao N,Zhang X,Chen X,Huang Q,Zhuang H,Hua ZC

    更新日期:2020-11-01 00:00:00

  • Trafficking abnormality and ER stress underlie functional deficiency of hearing impairment-associated connexin-31 mutants.

    abstract::Hearing impairment (HI) affects 1/1000 children and over 2% of the aged population. We have previously reported that mutations in the gene encoding gap junction protein connexin-31 (C×31) are associated with HI. The pathological mechanism of the disease mutations remains unknown. Here, we show that expression of C×31 ...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-010-0118-7

    authors: Xia K,Ma H,Xiong H,Pan Q,Huang L,Wang D,Zhang Z

    更新日期:2010-10-01 00:00:00

  • DNA sensor cGAS-mediated immune recognition.

    abstract::The host takes use of pattern recognition receptors (PRRs) to defend against pathogen invasion or cellular damage. Among microorganism-associated molecular patterns detected by host PRRs, nucleic acids derived from bacteria or viruses are tightly supervised, providing a fundamental mechanism of host defense. Pathogeni...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-016-0320-3

    authors: Xia P,Wang S,Gao P,Gao G,Fan Z

    更新日期:2016-11-01 00:00:00

  • Correction to: A binding-block ion selective mechanism revealed by a Na/K selective channel.

    abstract::In the original publication the PDB numbers were not cited. ...

    journal_title:Protein & cell

    pub_type: 已发布勘误

    doi:10.1007/s13238-019-0619-y

    authors: Yu J,Zhang B,Zhang Y,Xu CQ,Zhuo W,Ge J,Li J,Gao N,Li Y,Yang M

    更新日期:2019-07-01 00:00:00

  • The Fanconi anemia pathway and DNA interstrand cross-link repair.

    abstract::Fanconi anemia (FA) is an autosomal or X-linked recessive disorder characterized by chromosomal instability, bone marrow failure, cancer susceptibility, and a profound sensitivity to agents that produce DNA interstrand cross-link (ICL). To date, 15 genes have been identified that, when mutated, result in FA or an FA-l...

    journal_title:Protein & cell

    pub_type: 杂志文章,评审

    doi:10.1007/s13238-011-1098-y

    authors: Su X,Huang J

    更新日期:2011-09-01 00:00:00

  • Dscam mutation leads to hydrocephalus and decreased motor function.

    abstract::The nervous system is one of the most complicated organ systems in invertebrates and vertebrates. Down syndrome cell adhesion molecule (DSCAM) of the immunoglobulin (Ig) superfamily is expressed widely in the nervous system during embryonic development. Previous studies in Drosophila suggest that Dscam plays important...

    journal_title:Protein & cell

    pub_type: 杂志文章

    doi:10.1007/s13238-011-1072-8

    authors: Xu Y,Ye H,Shen Y,Xu Q,Zhu L,Liu J,Wu JY

    更新日期:2011-08-01 00:00:00