Experimental models to study intestinal microbes-mucus interactions in health and disease.

Abstract:

:A close symbiotic relationship exists between the intestinal microbiota and its host. A critical component of gut homeostasis is the presence of a mucus layer covering the gastrointestinal tract. Mucus is a viscoelastic gel at the interface between the luminal content and the host tissue that provides a habitat to the gut microbiota and protects the intestinal epithelium. The review starts by setting up the biological context underpinning the need for experimental models to study gut bacteria-mucus interactions in the digestive environment. We provide an overview of the structure and function of intestinal mucus and mucins, their interactions with intestinal bacteria (including commensal, probiotics and pathogenic microorganisms) and their role in modulating health and disease states. We then describe the characteristics and potentials of experimental models currently available to study the mechanisms underpinning the interaction of mucus with gut microbes, including in vitro, ex vivo and in vivo models. We then discuss the limitations and challenges facing this field of research.

journal_name

FEMS Microbiol Rev

authors

Etienne-Mesmin L,Chassaing B,Desvaux M,De Paepe K,Gresse R,Sauvaitre T,Forano E,de Wiele TV,Schüller S,Juge N,Blanquet-Diot S

doi

10.1093/femsre/fuz013

subject

Has Abstract

pub_date

2019-09-01 00:00:00

pages

457-489

issue

5

eissn

0168-6445

issn

1574-6976

pii

5511270

journal_volume

43

pub_type

杂志文章,评审
  • Archaeal cell surface biogenesis.

    abstract::Cell surfaces are critical for diverse functions across all domains of life, from cell-cell communication and nutrient uptake to cell stability and surface attachment. While certain aspects of the mechanisms supporting the biosynthesis of the archaeal cell surface are unique, likely due to important differences in cel...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章

    doi:10.1093/femsre/fuy027

    authors: Pohlschroder M,Pfeiffer F,Schulze S,Abdul Halim MF

    更新日期:2018-09-01 00:00:00

  • Antibiotic resistant meningococci in Europe: any need to act?

    abstract::Meningococcal disease is a serious and rapidly progressing illness. It is therefore very important to monitor changes in the level of antibiotic susceptibility among clinical isolates. Different aspects such as interpretation of laboratory results, determination of breakpoints predicting treatment failure as well as d...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2006.00049.x

    authors: Vázquez JA,Enriquez R,Abad R,Alcalá B,Salcedo C,Arreaza L

    更新日期:2007-01-01 00:00:00

  • Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed.

    abstract::The accurate synthesis of proteins, dictated by the corresponding nucleotide sequence encoded in mRNA, is essential for cell growth and survival. Central to this process are the aminoacyl-tRNA synthetases (aaRSs), which provide amino acid substrates for the growing polypeptide chain in the form of aminoacyl-tRNAs. The...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2008.00119.x

    authors: Hausmann CD,Ibba M

    更新日期:2008-07-01 00:00:00

  • Metal limitation and toxicity at the interface between host and pathogen.

    abstract::Metals are required cofactors for numerous fundamental processes that are essential to both pathogen and host. They are coordinated in enzymes responsible for DNA replication and transcription, relief from oxidative stress, and cellular respiration. However, excess transition metals can be toxic due to their ability t...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/1574-6976.12087

    authors: Becker KW,Skaar EP

    更新日期:2014-11-01 00:00:00

  • Toxin-antitoxin systems and their role in disseminating and maintaining antimicrobial resistance.

    abstract::Toxin-antitoxin systems (TAs) are ubiquitous among bacteria and play a crucial role in the dissemination and evolution of antibiotic resistance, such as maintaining multi-resistant plasmids and inducing persistence formation. Generally, activities of the toxins are neutralised by their conjugate antitoxins. In contras...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fux006

    authors: Yang QE,Walsh TR

    更新日期:2017-05-01 00:00:00

  • Internal affairs: investigating the Brucella intracellular lifestyle.

    abstract::Bacteria of the genus Brucella are Gram-negative pathogens of several animal species that cause a zoonotic disease in humans known as brucellosis or Malta fever. Within their hosts, brucellae reside within different cell types where they establish a replicative niche and remain protected from the immune response. The ...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2012.00334.x

    authors: von Bargen K,Gorvel JP,Salcedo SP

    更新日期:2012-05-01 00:00:00

  • Broad-specificity efflux pumps and their role in multidrug resistance of Gram-negative bacteria.

    abstract::Antibiotic resistance mechanisms reported in Gram-negative bacteria are causing a worldwide health problem. The continuous dissemination of 'multidrug-resistant' (MDR) bacteria drastically reduces the efficacy of our antibiotic 'arsenal' and consequently increases the frequency of therapeutic failure. In MDR bacteria,...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2011.00290.x

    authors: Nikaido H,Pagès JM

    更新日期:2012-03-01 00:00:00

  • Evolution of the soluble diiron monooxygenases.

    abstract::Based on structural, biochemical, and genetic data, the soluble diiron monooxygenases can be divided into four groups: the soluble methane monooxygenases, the Amo alkene monooxygenase of Rhodococcus corallinus B-276, the phenol hydroxylases, and the four-component alkene/aromatic monooxygenases. The limited phylogenet...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/S0168-6445(03)00023-8

    authors: Leahy JG,Batchelor PJ,Morcomb SM

    更新日期:2003-10-01 00:00:00

  • Survival of human enteric viruses in the environment and food.

    abstract::Human enteric pathogenic viruses can enter the environment through discharge of waste materials from infected persons, and be transmitted back to susceptible persons to continue the cycle of disease. Contamination of food with viruses may also promote disease outbreaks. A number of studies have investigated the surviv...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/j.femsre.2004.02.001

    authors: Rzezutka A,Cook N

    更新日期:2004-10-01 00:00:00

  • Regulation of whole bacterial pathogen transcription within infected hosts.

    abstract::DNA microarrays are a powerful and promising approach to gain a detailed understanding of the bacterial response and the molecular cross-talk that can occur as a consequence of host-pathogen interactions. However, published studies mainly describe the host response to infection. Analysis of bacterial gene regulation i...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2008.00103.x

    authors: La MV,Raoult D,Renesto P

    更新日期:2008-05-01 00:00:00

  • Microbial arsenic: from geocycles to genes and enzymes.

    abstract::Arsenic compounds have been abundant at near toxic levels in the environment since the origin of life. In response, microbes have evolved mechanisms for arsenic resistance and enzymes that oxidize As(III) to As(V) or reduce As(V) to As(III). Formation and degradation of organoarsenicals, for example methylarsenic comp...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2002.tb00617.x

    authors: Mukhopadhyay R,Rosen BP,Phung LT,Silver S

    更新日期:2002-08-01 00:00:00

  • Bacterial plasminogen activators and receptors.

    abstract::Invasive bacterial pathogens intervene at various stages and by various mechanisms with the mammalian plasminogen/plasmin system. A vast number of pathogens express plasmin(ogen) receptors that immobilize plasmin(ogen) on the bacterial surface, an event that enhances activation of plasminogen by mammalian plasminogen ...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2001.tb00590.x

    authors: Lähteenmäki K,Kuusela P,Korhonen TK

    更新日期:2001-12-01 00:00:00

  • Salmonella's long-term relationship with its host.

    abstract::Host-adapted strains of Salmonella enterica cause systemic infections and have the ability to persist systemically for long periods of time and pose significant public-health problems. Multidrug-resistant S. enterica serovar Typhi (S. Typhi) and nontyphoidal Salmonella (NTS) are on the increase and are often associate...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2012.00332.x

    authors: Ruby T,McLaughlin L,Gopinath S,Monack D

    更新日期:2012-05-01 00:00:00

  • Peptidases and proteases of Escherichia coli and Salmonella typhimurium.

    abstract::A number of peptidases and proteases have been identified in Escherichia coli. Although their specific physiological roles are often not known, some of them have been shown to be involved in: the maturation of nascent polypeptide chains; the maturation of protein precursors; the signal peptide processing of exported p...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/0168-6445(89)90035-1

    authors: Lazdunski AM

    更新日期:1989-09-01 00:00:00

  • Nickel uptake and utilization by microorganisms.

    abstract::Nickel is an essential nutrient for selected microorganisms where it participates in a variety of cellular processes. Many microbes are capable of sensing cellular nickel ion concentrations and taking up this nutrient via nickel-specific permeases or ATP-binding cassette-type transport systems. The metal ion is specif...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/S0168-6445(03)00042-1

    authors: Mulrooney SB,Hausinger RP

    更新日期:2003-06-01 00:00:00

  • Central role of the respiratory syncytial virus matrix protein in infection.

    abstract::Respiratory syncytial virus is the major respiratory pathogen of infants and children worldwide, with no effective treatment or vaccine available. Steady progress has been made in understanding the respiratory syncytial virus life cycle and the consequences of infection, but many areas of respiratory syncytial virus b...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2006.00025.x

    authors: Ghildyal R,Ho A,Jans DA

    更新日期:2006-09-01 00:00:00

  • From hairballs to hypotheses-biological insights from microbial networks.

    abstract::Microbial networks are an increasingly popular tool to investigate microbial community structure, as they integrate multiple types of information and may represent systems-level behaviour. Interpreting these networks is not straightforward, and the biological implications of network properties are unclear. Analysis of...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuy030

    authors: Röttjers L,Faust K

    更新日期:2018-11-01 00:00:00

  • Role of eukaryotic-like serine/threonine kinases in bacterial cell division and morphogenesis.

    abstract::Bacteria possess a repertoire of versatile protein kinases modulating diverse aspects of their physiology by phosphorylating proteins on various amino acids including histidine, cysteine, aspartic acid, arginine, serine, threonine and tyrosine. One class of membrane serine/threonine protein kinases possesses a catalyt...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv041

    authors: Manuse S,Fleurie A,Zucchini L,Lesterlin C,Grangeasse C

    更新日期:2016-01-01 00:00:00

  • Class IIa bacteriocins: biosynthesis, structure and activity.

    abstract::In the last decade, a variety of ribosomally synthesized antimicrobial peptides or bacteriocins produced by lactic acid bacteria have been identified and characterized. As a result of these studies, insight has been gained into fundamental aspects of biology and biochemistry such as producer self protection, membrane-...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2000.tb00534.x

    authors: Ennahar S,Sashihara T,Sonomoto K,Ishizaki A

    更新日期:2000-01-01 00:00:00

  • Sensing the enemy, containing the threat: cell-autonomous immunity to Chlamydia trachomatis.

    abstract::The bacterium Chlamydia trachomatis is the etiological agent of the most common sexually transmitted infection in North America and Europe. Medical complications resulting from genital C. trachomatis infections arise predominantly in women where the initial infections often remain asymptomatic and thus unrecognized. U...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuw027

    authors: Finethy R,Coers J

    更新日期:2016-11-01 00:00:00

  • Phagocyte subsets and lymphocyte clonal deletion behind ineffective immune response to Staphylococcus aureus.

    abstract::Lack of known mechanisms of protection against Staphylococcus aureus in humans is hindering development of efficacious vaccines. Preclinical as well as clinical data suggest that antibodies play an important role against S. aureus. For instance, certain hypogammaglobulinaemic patients are at increased risk of staphylo...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv024

    authors: Pozzi C,Lofano G,Mancini F,Soldaini E,Speziale P,De Gregorio E,Rappuoli R,Bertholet S,Grandi G,Bagnoli F

    更新日期:2015-09-01 00:00:00

  • Applications of S-layers.

    abstract::The wealth of information existing on the general principle of S-layers has revealed a broad application potential. The most relevant features exploited in applied S-layer research are: (i) pores passing through S-layers show identical size and morphology and are in the range of ultrafiltration membranes; (ii) functio...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1997.tb00306.x

    authors: Sleytr UB,Bayley H,Sára M,Breitwieser A,Küpcü S,Mader C,Weigert S,Unger FM,Messner P,Jahn-Schmid B,Schuster B,Pum D,Douglas K,Clark NA,Moore JT,Winningham TA,Levy S,Frithsen I,Pankovc J,Beale P,Gillis HP,Choutov

    更新日期:1997-06-01 00:00:00

  • Alice in microbes' land: adaptations and counter-adaptations of vector-borne parasitic protozoa and their hosts.

    abstract::In the present review, we aim to provide a general introduction to different facets of the arms race between pathogens and their hosts/environment, emphasizing its evolutionary aspects. We focus on vector-borne parasitic protozoa, which have to adapt to both invertebrate and vertebrate hosts. Using Leishmania, Trypano...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuw018

    authors: Caljon G,De Muylder G,Durnez L,Jennes W,Vanaerschot M,Dujardin JC

    更新日期:2016-09-01 00:00:00

  • Escherichia coli O157:H7 colonization in small domestic ruminants.

    abstract::Enterohaemorrhagic Escherichia coli O157:H7 was first implicated in human disease in the early 1980s, with ruminants cited as the primary reservoirs. Preliminary studies indicated cattle to be the sole source of E. coli O157:H7 outbreaks in humans; however, further epidemiological studies soon demonstrated that E. col...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2008.00138.x

    authors: La Ragione RM,Best A,Woodward MJ,Wales AD

    更新日期:2009-03-01 00:00:00

  • Phages of the marine cyanobacterial picophytoplankton.

    abstract::Cyanobacteria of the genera Synechococcus and Prochlorococcus dominate the prokaryotic component of the picophytoplankton in the oceans. It is still less than 10 years since the discovery of phages that infect marine Synechococcus and the beginning of the characterisation of these phages and assessment of their ecolog...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/S0168-6445(03)00016-0

    authors: Mann NH

    更新日期:2003-04-01 00:00:00

  • Bacteriophage HK97 head assembly.

    abstract::The head assembly pathway of bacteriophage HK97 shares many features with head assembly pathways determined for other dsDNA phages, and it also provides examples of novel variations on the basic theme. We describe aspects of two specific steps in the assembly pathway, the covalent cross-linking among the assembled hea...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.1995.tb00186.x

    authors: Duda RL,Martincic K,Xie Z,Hendrix RW

    更新日期:1995-08-01 00:00:00

  • Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida.

    abstract::Pseudomonas putida is a gram-negative rod-shaped gammaproteobacterium that is found throughout various environments. Members of the species P. putida show a diverse spectrum of metabolic activities, which is indicative of their adaptation to various niches, which includes the ability to live in soils and sediments con...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1111/j.1574-6976.2010.00249.x

    authors: Wu X,Monchy S,Taghavi S,Zhu W,Ramos J,van der Lelie D

    更新日期:2011-03-01 00:00:00

  • Formyl-methanofuran synthesis in Methanobacterium thermoautotrophicum.

    abstract::The initial step of methanogenesis from CO2 is the formation of formyl-methanofuran (formyl-MFR) from methanofuran (MFR), CO2 and H2. The enzymology of this novel type of CO2 fixation reaction has been difficult to study because formyl-MFR synthesis is subject to a complex activation. Recently, however, a number of ad...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1016/0378-1097(90)90473-4

    authors: Bobik TA,DiMarco AA,Wolfe RS

    更新日期:1990-12-01 00:00:00

  • One cannot rule them all: Are bacterial toxins-antitoxins druggable?

    abstract::Type II (proteic) toxin-antitoxin (TA) operons are widely spread in bacteria and archaea. They are organized as operons in which, usually, the antitoxin gene precedes the cognate toxin gene. The antitoxin generally acts as a transcriptional self-repressor, whereas the toxin acts as a co-repressor, both proteins consti...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fuv002

    authors: Chan WT,Balsa D,Espinosa M

    更新日期:2015-07-01 00:00:00

  • Environmental and genetic modulation of the phenotypic expression of antibiotic resistance.

    abstract::Antibiotic resistance can be acquired by mutation or horizontal transfer of a resistance gene, and generally an acquired mechanism results in a predictable increase in phenotypic resistance. However, recent findings suggest that the environment and/or the genetic context can modify the phenotypic expression of specifi...

    journal_title:FEMS microbiology reviews

    pub_type: 杂志文章,评审

    doi:10.1093/femsre/fux004

    authors: Hughes D,Andersson DI

    更新日期:2017-05-01 00:00:00