Sole head transcriptomics reveals a coordinated developmental program during metamorphosis.

Abstract:

:Most teleosts undergo a thyroid hormone (TH) regulated larval to juvenile transition known as metamorphosis. In Pleuronectiformes (flatfish), metamorphosis is most dramatic, and one eye of the symmetric pelagic larvae migrates to the opposite side of the head, giving rise to an asymmetric benthic juvenile with both eyes on the same side of the body. Asymmetric development occurs mostly in the head. To understand the genetic mechanisms underlying this developmental change we have generated a Solea senegalensis metamorphosing flatfish head transcriptome. Our results reveal that THs acting as integrative factors direct a stepwise genetic program that initiates a specific organismal level response followed by cell specific responses that lead to the long-term changes that characterise the post-metamorphic identity and physiology of the head. Flatfish head asymmetric development during metamorphosis and its TH dependency is conserved thus we consider the findings in sole most likely representative of all flatfish species.

journal_name

Genomics

journal_title

Genomics

authors

Louro B,Marques JP,Manchado M,Power DM,Campinho MA

doi

10.1016/j.ygeno.2019.04.011

subject

Has Abstract

pub_date

2020-01-01 00:00:00

pages

592-602

issue

1

eissn

0888-7543

issn

1089-8646

pii

S0888-7543(18)30458-0

journal_volume

112

pub_type

杂志文章

相关文献

GENOMICS文献大全
  • The human growth hormone locus: nucleotide sequence, biology, and evolution.

    abstract::The human chromosomal growth hormone locus contained on cloned DNA and spanning approximately 66,500 bp was sequenced in its entirety to provide a framework for the analysis of its biology and evolution. This locus evolved by a series of duplications and contains in its present form five genes which display a remarkab...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90271-1

    authors: Chen EY,Liao YC,Smith DH,Barrera-Saldaña HA,Gelinas RE,Seeburg PH

    更新日期:1989-05-01 00:00:00

  • Characterization and chromosomal mapping of the gene encoding the cellular DNA binding protein ILF.

    abstract::Recently we isolated a cellular DNA binding protein, designated interleukin enhancer binding factor (ILF), that binds to purine-rich regulatory motifs in both the HIV-1 LTR and the IL2 promoter. Further analysis of the ILF gene reveals the existence of two mRNA species, both of which encode proteins containing the rec...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(92)90139-j

    authors: Li C,Lusis AJ,Sparkes R,Nirula A,Gaynor R

    更新日期:1992-07-01 00:00:00

  • Polycystin-1L2 is a novel G-protein-binding protein.

    abstract::Mutations in genes encoding polycystin-1 (PC1) and polycystin-2 cause autosomal dominant polycystic kidney disease. The polycystin protein family is composed of Ca2+-permeable pore-forming subunits and receptor-like integral membrane proteins. Here we describe a novel member of the polycystin-1-like subfamily, polycys...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2004.02.008

    authors: Yuasa T,Takakura A,Denker BM,Venugopal B,Zhou J

    更新日期:2004-07-01 00:00:00

  • The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.

    abstract::In this report we define the genes of two-component regulatory systems in rice through a comprehensive computational analysis of rice (Oryza sativa L.) genome sequence databases. Thirty-seven genes were identified, including 5 HKs (cytokinin-response histidine protein kinase) (OsHK1-4, OsHKL1), 5 HPs (histidine phosph...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2007.02.001

    authors: Du L,Jiao F,Chu J,Jin G,Chen M,Wu P

    更新日期:2007-06-01 00:00:00

  • Cloning of human chromosome 17-specific cDNAs using representational difference analysis and human-mouse hybrid cells.

    abstract::We employed cDNA representational difference analysis (RDA) with human-mouse somatic hybrid cells containing human chromosome 17 and obtained several cDNA clones specific for this chromosome. A cDNA library from PHA-stimulated T cells was screened with unknown cDNA clones obtained by RDA as probes. Subsequently, 1 com...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4729

    authors: Tajima Y,Tashiro K,Camerini D

    更新日期:1997-06-01 00:00:00

  • Identification and characterization of circular RNA in lactating mammary glands from two breeds of sheep with different milk production profiles using RNA-Seq.

    abstract::CircRNA is a specific type of non-coding RNA that has been shown to have an important role in mammary gland (MG) activity, but no study of MG circRNA activity in sheep so far. In this study, the expression profile of circRNAs was investigated using RNA-Seq in MG parenchyma at peak lactation from Small-Tailed Han sheep...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.12.014

    authors: Hao Z,Zhou H,Hickford JGH,Gong H,Wang J,Hu J,Liu X,Li S,Zhao M,Luo Y

    更新日期:2020-05-01 00:00:00

  • Multipoint mapping of the central core disease locus.

    abstract::A linkage analysis with 12 DNA markers from proximal 19q was performed in eight families with central core disease (CCO). Two-point analysis gave a peak lod score of Z = 4.95 at theta = 0.00 for the anonymous marker D19S190 and of Z = 2.53 at theta = 0.00 for the ryanodine receptor (RYR1) candidate gene. Multipoint li...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1302

    authors: Schwemmle S,Wolff K,Palmucci LM,Grimm T,Lehmann-Horn F,Hübner C,Hauser E,Iles DE,MacLennan DH,Müller CR

    更新日期:1993-07-01 00:00:00

  • Maternal and paternal chromosomes 7 show differential methylation of many genes in lymphoblast DNA.

    abstract::Genomic imprinting, the differential expression of paternal and maternal alleles, involves many chromosomal regions and plays a role in development and growth. Differential methylation of maternal and paternal alleles is a hallmark of imprinted genes, and thus methylation assays are widely used to support the identifi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6502

    authors: Hannula K,Lipsanen-Nyman M,Scherer SW,Holmberg C,Höglund P,Kere J

    更新日期:2001-04-01 00:00:00

  • Structure, chromosomal location, and expression pattern of three mouse genes homologous to the human MAGE genes.

    abstract::The human MAGE1 gene directs the expression of an antigen recognized on a melanoma by autologous cytolytic T lymphocytes. MAGE1 belongs to a family of genes that are expressed in a number of tumors of various histological types but not in normal tissues except testis. The MAGE genes are arranged in two groups that are...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1108

    authors: De Backer O,Verheyden AM,Martin B,Godelaine D,De Plaen E,Brasseur R,Avner P,Boon T

    更新日期:1995-07-01 00:00:00

  • Fibulin-2 (FBLN2): human cDNA sequence, mRNA expression, and mapping of the gene on human and mouse chromosomes.

    abstract::Fibulin-2 is a new extracellular matrix protein that we recently identified by characterizing mouse cDNA clones. Fibulin-2 mRNA is prominently expressed in mouse heart tissue and is present in low amounts in other tissues. In this study, we isolated and sequenced a 4.1-kb human fibulin-2 cDNA, which encoded a mature p...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1404

    authors: Zhang RZ,Pan TC,Zhang ZY,Mattei MG,Timpl R,Chu ML

    更新日期:1994-07-15 00:00:00

  • Odorant and vomeronasal receptor genes in two mouse genome assemblies.

    abstract::Odorant receptors (ORs) and vomeronasal receptors (V1Rs and V2Rs) are large superfamilies of chemosensory receptors. As an extension of previous research using the 2001 Celera mouse genome assembly, we analyzed OR and V1R genes in the 2002 public mouse genome assembly. We identified 1403 OR genes (1068 potentially int...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2003.10.009

    authors: Zhang X,Rodriguez I,Mombaerts P,Firestein S

    更新日期:2004-05-01 00:00:00

  • Comparative study on seasonal hair follicle cycling by analysis of the transcriptomes from cashmere and milk goats.

    abstract::Guard hair and cashmere undercoat are developed from primary and secondary hair follicle, respectively. Little is known about the gene expression differences between primary and secondary hair follicle cycling. In this study, we obtained RNA-seq data from cashmere and milk goats grown at four different seasons. We stu...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2019.02.013

    authors: Zhang Y,Wu K,Wang L,Wang Z,Han W,Chen D,Wei Y,Su R,Wang R,Liu Z,Zhao Y,Wang Z,Zhan L,Zhang Y,Li J

    更新日期:2020-01-01 00:00:00

  • A novel human gene (SARM) at chromosome 17q11 encodes a protein with a SAM motif and structural similarity to Armadillo/beta-catenin that is conserved in mouse, Drosophila, and Caenorhabditis elegans.

    abstract::A novel human gene, SARM, encodes the orthologue of a Drosophila protein (CG7915) and contains a unique combination of the sterile alpha (SAM) and the HEAT/Armadillo motifs. The SARM gene was identified on chromosome 17q11, between markers D17S783 and D17S841 on BAC clone AC002094, which also included a HERV repeat an...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6548

    authors: Mink M,Fogelgren B,Olszewski K,Maroy P,Csiszar K

    更新日期:2001-06-01 00:00:00

  • Molecular cloning and chromosomal mapping of the mouse cyclin-dependent kinase 5 gene.

    abstract::Cyclin-dependent kinase 5 (Cdk5) is predominantly expressed in neurons. In vitro, Cdk5 purified from the nervous tissue phosphorylates both high-molecular-weight neurofilament and microtubule-associated tau. The mouse gene encoding Cdk5 (Cdk5) was found to be 5 kb in length and divided into 12 exons. All of the exon-i...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1194

    authors: Ohshima T,Nagle JW,Pant HC,Joshi JB,Kozak CA,Brady RO,Kulkarni AB

    更新日期:1995-08-10 00:00:00

  • Effect of selenocystine on gene expression profiles in human keloid fibroblasts.

    abstract::In this study, selenocystine, a nutritionally available selenoamino acid, was identified for the first time as a novel agent with anti proliferative activity on human keloids. The 20 μM concentration after 48 h treatment used here was the most effective to reduce keloid fibroblast growth. We analyzed the gene expressi...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2011.02.009

    authors: De Felice B,Garbi C,Wilson RR,Santoriello M,Nacca M

    更新日期:2011-05-01 00:00:00

  • A single segment substitution line population for identifying traits relevant to drought tolerance and avoidance.

    abstract::A population of chromosome segment substitution lines was developed using KDML105 as the recurrent parent and one of DH212 (IR68586-F2-CA-143) or DH103 (IR68586-F2-CA-31) as the donor parent. The donor parents are part of a doubled haploid population from a cross between CT9993, an upland japonica accession, and IR622...

    journal_title:Genomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.ygeno.2019.10.001

    authors: Shearman JR

    更新日期:2019-10-31 00:00:00

  • Exonic SINE insertion in STK38L causes canine early retinal degeneration (erd).

    abstract::Fine mapping followed by candidate gene analysis of erd - a canine hereditary retinal degeneration characterized by aberrant photoreceptor development - established that the disease cosegregates with a SINE insertion in exon 4 of the canine STK38L/NDR2 gene. The mutation removes exon 4 from STK38L transcripts and is p...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2010.09.003

    authors: Goldstein O,Kukekova AV,Aguirre GD,Acland GM

    更新日期:2010-12-01 00:00:00

  • Identification of a novel conserved human gene, TEGT.

    abstract::A novel gene, TEGT (testis enhanced gene transcript), has been identified in humans. It does not belong to any known gene family of vertebrates. The deduced amino acid sequence of the gene and a bacterial protein of unknown function show low but significant homology and very similar hydrophobicity profiles. Two differ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1995.1145

    authors: Walter L,Marynen P,Szpirer J,Levan G,Günther E

    更新日期:1995-07-20 00:00:00

  • A radiation hybrid map of human chromosome 11q22-q23 containing the ataxia-telangiectasia disease locus.

    abstract::We describe a high-resolution radiation hybrid map of human chromosome 11q22-q23 containing the ataxia-telangiectasia (AT) disease gene loci. The order and intermarker distances of 32 chromosome 11q22-q23 markers were determined by a multipoint maximum likelihood method of analysis of the cosegregation of markers in 1...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1993.1275

    authors: Richard CW 3rd,Cox DR,Kapp L,Murnane J,Cornelis F,Julier C,Lathrop GM,James MR

    更新日期:1993-07-01 00:00:00

  • Mutation identification of the DSPP in a Chinese family with DGI-II and an up-to-date bioinformatic analysis.

    abstract::In this study, through linkage analysis of a four-generation Chinese family with multiple members afflicted with DGI (type II), we identified a novel missense mutation in DSPP. The mutation was located in exon 2 at the second nucleotide position of the last codon and resulted in a substitution of a proline with a leuc...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2012.01.006

    authors: Li D,Du X,Zhang R,Shen B,Huang Y,Valenzuela RK,Wang B,Zhao H,Liu Z,Li J,Xu Z,Gao L,Ma J

    更新日期:2012-04-01 00:00:00

  • Evolutionary rate heterogeneity between multi- and single-interface hubs across human housekeeping and tissue-specific protein interaction network: Insights from proteins' and its partners' properties.

    abstract::Integrating gene expression into protein-protein interaction network (PPIN) leads to the construction of tissue-specific (TS) and housekeeping (HK) sub-networks, with distinctive TS- and HK-hubs. All such hub proteins are divided into multi-interface (MI) hubs and single-interface (SI) hubs, where MI hubs evolve slowe...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2017.11.006

    authors: Biswas K,Acharya D,Podder S,Ghosh TC

    更新日期:2018-09-01 00:00:00

  • The gene encoding protein 4.2 is distinct from the mouse platelet storage pool deficiency mutation pallid.

    abstract::Previous studies identified the gene encoding the erythrocyte membrane protein 4.2 (Epb4.2) as a candidate for the mouse mutation pallid (pa); Epb4.2 genetically colocalized near pa on mouse Chromosome 2, and a truncated Epb4.2 transcript was present in tissues derived from pallid mice. We report here evidence that Ep...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1997.4764

    authors: Gwynn B,Korsgren C,Cohen CM,Ciciotte SL,Peters LL

    更新日期:1997-06-15 00:00:00

  • Rapid restriction mapping of cosmids by sequence-specific triple-helix-mediated affinity capture.

    abstract::A simple and rapid strategy for restriction mapping based on sequence-specific triple-helix affinity capture (TAC) was developed. The strategy was applied to the analysis of cosmid clones by the construction of a new cosmid vector, ScosTriplex-II, containing two different triple-helix-forming sequences flanking the cl...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0030

    authors: Ji H,Francisco T,Smith LM,Guilfoyle RA

    更新日期:1996-01-15 00:00:00

  • The proximity of DNA sequences in interphase cell nuclei is correlated to genomic distance and permits ordering of cosmids spanning 250 kilobase pairs.

    abstract::The physical distance between DNA sequences in interphase nuclei was determined using eight cosmids containing fragments of the Chinese hamster genome that span 273 kb surrounding the dihydrofolate reductase (DHFR) gene. The distance between these sequences at the molecular level has been determined previously by rest...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/0888-7543(89)90112-2

    authors: Trask B,Pinkel D,van den Engh G

    更新日期:1989-11-01 00:00:00

  • A point mutation creating an extra N-glycosylation site in fibrillin-1 results in neonatal Marfan syndrome.

    abstract::Fibrillin-1 is a large cysteine-rich glycoprotein of the 10-nm microfibrils in the extracellular matrix. A spectrum of mutations in the fibrillin-1 gene (FBN1) have been identified in patients with Marfan syndrome (MFS), and the majority of mutations resulting in the neonatal and often lethal form of MFS have been ide...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0492

    authors: Lönnqvist L,Karttunen L,Rantamäki T,Kielty C,Raghunath M,Peltonen L

    更新日期:1996-09-15 00:00:00

  • Fluorescence in situ hybridization mapping of the mouse platelet endothelial cell adhesion molecule-1 (PECAM1) to mouse chromosome 6, region F3-G1.

    abstract::Human platelet/endothelial cell adhesion molecule-1 (PECAM1), an important member of the immunoglobulin gene superfamily, is widely distributed on cells of the vascular system and mediates cellular interactions through both homophilic and heterophilic adhesive mechanisms. The function of PECAM1 in vitro has begun to b...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1996.0546

    authors: Xie Y,Muller WA

    更新日期:1996-10-15 00:00:00

  • The complete mitochondrial genome of Sarcoptes scabiei var. nyctereutis from the Japanese raccoon dog: Prediction and detection of two transfer RNAs (tRNA-A and tRNA-Y).

    abstract::Sarcoptes scabiei (Acari: Sarcoptidae) causes a common contagious skin disease that affects many mammals. Here, the complete mitochondrial genome of a mite, S. scabiei var. nyctereutis, from Japanese wild raccoon dogs was analyzed. The 13,837bp circular genome contained 13 protein-coding genes, two rRNA genes, and 22 ...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1016/j.ygeno.2018.09.002

    authors: Ueda T,Tarui H,Kido N,Imaizumi K,Hikosaka K,Abe T,Minegishi D,Tada Y,Nakagawa M,Tanaka S,Omiya T,Morikaku K,Kawahara M,Kikuchi-Ueda T,Akuta T,Ono Y

    更新日期:2019-12-01 00:00:00

  • Physical map and characterization of transcripts in the candidate interval for familial chondrocalcinosis at chromosome 5p15.1.

    abstract::The gene for familial chondrocalcinosis (MIM 118600; gene symbol CCAL2) has been localized to a 0.8-cM interval on the short arm of chromosome 5, between the polymorphic microsatellite markers D5S416 and D5S2114. We have undertaken the physical and transcript mapping of this interval, as well as regions telomeric to t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1999.5997

    authors: Rojas K,Serrano de la Peña L,Gallardo T,Simmons A,Nyce K,McGrath R,Considine E,Vasko AJ,Peterson E,Grady D,Cox R,Andrew LJ,Lovett M,Overhauser J,Williams CJ

    更新日期:1999-12-01 00:00:00

  • The HNF-3 gene family of transcription factors in mice: gene structure, cDNA sequence, and mRNA distribution.

    abstract::The rat HNF-3 (hepatocyte nuclear factor 3) gene family encodes three transcription factors known to be important in the regulation of gene expression in liver and lung. We have cloned and characterized the mouse genes and cDNAs for HNF-3 alpha, beta, and gamma and analyzed their expression patterns in various adult t...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.1994.1191

    authors: Kaestner KH,Hiemisch H,Luckow B,Schütz G

    更新日期:1994-04-01 00:00:00

  • Wdr12, a mouse gene encoding a novel WD-Repeat Protein with a notchless-like amino-terminal domain.

    abstract::The WD-repeat protein family consists of a large group of structurally related yet functionally diverse proteins found predominantly in eukaryotic cells. These factors contain several (4-16) copies of a recognizable amino-acid sequence motif (the WD unit) thought to be organized into a "propeller-like" structure invol...

    journal_title:Genomics

    pub_type: 杂志文章

    doi:10.1006/geno.2001.6682

    authors: Nal B,Mohr E,Silva MI,Tagett R,Navarro C,Carroll P,Depetris D,Verthuy C,Jordan BR,Ferrier P

    更新日期:2002-01-01 00:00:00