Genetic analysis of DNA methylation and hydroxymethylation genes in Parkinson's disease.

Abstract:

:DNA methylation is an important regulatory mechanism of Parkinson's disease (PD). To investigate the relationship between DNA methylation and hydroxymethylation genes and PD, we performed gene-targeted sequencing using molecular inversion probes in a Chinese PD population. We sequenced 12 genes related to DNA methylation and hydroxymethylation in 1657 patients and 1394 control subjects. We conducted genewise association analyses of rare variants detected in the present study and identified the TET1 gene as important in PD (p = 0.0037738, 0.013, 0.019521 (b.collapse test, variable threshold test, and skat-o test, respectively; sex + age as covariates). However, no positive results were observed when conducting association analyses on common variants in these genes. We performed a comprehensive analysis of associations between variants of DNA methylation and hydroxymethylation genes and PD, resulting in determination that TET1 might play a role in PD.

journal_name

Neurobiol Aging

journal_title

Neurobiology of aging

authors

Shu L,Qin L,Min S,Pan H,Zhong J,Guo J,Sun Q,Yan X,Chen C,Tang B,Xu Q

doi

10.1016/j.neurobiolaging.2019.02.025

subject

Has Abstract

pub_date

2019-12-01 00:00:00

pages

242.e13-242.e16

eissn

0197-4580

issn

1558-1497

pii

S0197-4580(19)30075-2

journal_volume

84

pub_type

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