Microfluidics for cell factory and bioprocess development.

Abstract:

:Bioindustry is expanding to an increasing variety of food, chemical and pharmaceutical products, each requiring rapid development of a dedicated cell factory and bioprocess. Microfluidic tools are, together with tools from synthetic biology and metabolic modeling, being employed in cell factory and bioprocess development to speed up development and address new products. Recent examples of microfluidics for bioprocess development range from integrated devices for DNA assembly and transformation, to high throughput screening of cell factory libraries, and micron scale bioreactors for process optimization. These improvements act to improve the biotechnological engineering cycle with tools for building, testing and evaluating cell factories and bioprocesses by increasing throughput, parallelization and automation.

journal_name

Curr Opin Biotechnol

authors

Bjork SM,Joensson HN

doi

10.1016/j.copbio.2018.08.011

subject

Has Abstract

pub_date

2019-02-01 00:00:00

pages

95-102

eissn

0958-1669

issn

1879-0429

pii

S0958-1669(18)30055-7

journal_volume

55

pub_type

杂志文章,评审
  • Vernalization and flowering time.

    abstract::Vernalization is the process by which flowering is promoted by prolonged exposure to the cold of a typical winter. In certain plant species, the role of vernalization is to suppress the expression of genes that encode repressors of flowering. In Arabidopsis, this suppression is an epigenetic phenomenon in the sense th...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.02.004

    authors: Amasino RM

    更新日期:2005-04-01 00:00:00

  • Mismatch repair and cancer susceptibility.

    abstract::Mismatch-repair systems have been identified in organisms ranging from Escherichia coli to humans. They can repair almost all DNA base pair mismatches as well as small insertion/deletion mismatches. Molecular and biochemical analyses have shown that the core components of eukaryotic mismatch-repair systems are highly ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(94)90079-5

    authors: Kolodner RD,Alani E

    更新日期:1994-12-01 00:00:00

  • Biotechnological potential of aquatic plant-microbe interactions.

    abstract::The rhizosphere in terrestrial systems is the region of soil surrounding plant roots where there is increased microbial activity; in aquatic plants, this definition may be less clear because of diffusion of nutrients in water, but there is still a zone of influence by plant roots in this environment [1]. Within that z...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.04.004

    authors: Stout L,Nüsslein K

    更新日期:2010-06-01 00:00:00

  • The expanding role of marine microbes in pharmaceutical development.

    abstract::Marine microbes have received growing attention as sources of bioactive metabolites and offer a unique opportunity to both increase the number of marine natural products in clinical trials as well as expedite their development. This review focuses specifically on those molecules currently in the clinical pipeline that...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.09.013

    authors: Waters AL,Hill RT,Place AR,Hamann MT

    更新日期:2010-12-01 00:00:00

  • Edible genetically modified microorganisms and plants for improved health.

    abstract::The development of new strategies for the delivery of vaccine antigens or immune modulators to the mucosal tissue includes innovative approaches such as the use of genetically modified food microorganisms and plants. Even though the 'proof-of-concept' has recently been established for these two systems, key questions ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00255-x

    authors: Mercenier A,Wiedermann U,Breiteneder H

    更新日期:2001-10-01 00:00:00

  • In vitro display technologies: novel developments and applications.

    abstract::In vitro display techniques are powerful tools to select polypeptide binders against various target molecules. Novel applications include maturation of protein affinity and stability, selection for enzymatic activity, and the display of cDNA and random polypeptide libraries. Taken together, these display techniques ha...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00234-2

    authors: Amstutz P,Forrer P,Zahnd C,Plückthun A

    更新日期:2001-08-01 00:00:00

  • Extracellular production of recombinant proteins using bacterial autotransporters.

    abstract::Escherichia coli is still a very popular host for the production of recombinant proteins at an analytical or industrial scale. Secretion of the proteins into the culture medium or display at the cell surface would be preferred in many applications but is hampered by the complex two-layered cell envelope. The autotrans...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.07.009

    authors: Jong WS,Saurí A,Luirink J

    更新日期:2010-10-01 00:00:00

  • Growth factors as wound healing agents.

    abstract::Wound healing can no longer be considered a generic term: it is the summation of a complex series of processes beginning with coagulation and ending in remodelling. This review, therefore, summarizes the past year's advances in growth factor research according to the roles of the individual growth factors in the speci...

    journal_title:Current opinion in biotechnology

    pub_type: 临床试验,杂志文章,评审

    doi:10.1016/s0958-1669(05)80122-3

    authors: Robson MC

    更新日期:1991-12-01 00:00:00

  • Designer microbes for biosynthesis.

    abstract::Microbes have long been adapted for the biosynthetic production of useful compounds. There is increasing demand for the rapid and cheap microbial production of diverse molecules in an industrial setting. Microbes can now be designed and engineered for a particular biosynthetic purpose, thanks to recent developments in...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.02.014

    authors: Quin MB,Schmidt-Dannert C

    更新日期:2014-10-01 00:00:00

  • Whole genome amplification--applications and advances.

    abstract::The concept of whole genome amplification is something that has arisen in the past few years as the polymerase chain reaction (PCR) has been adapted to replicate regions of genomes that are of biological interest. The applications are many--forensic science, embryonic disease diagnosis, bioterrorism genome detection, ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(02)00286-0

    authors: Hawkins TL,Detter JC,Richardson PM

    更新日期:2002-02-01 00:00:00

  • Engineering the spatial organization of metabolic enzymes: mimicking nature's synergy.

    abstract::A growing body of evidence indicates that many cellular reactions within metabolic pathways are catalyzed not by free-floating 'soluble' enzymes, but via one or more membrane-associated multienzyme complexes. This type of macromolecular organization has important implications for the overall efficiency, specificity, a...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2008.07.006

    authors: Conrado RJ,Varner JD,DeLisa MP

    更新日期:2008-10-01 00:00:00

  • Synthetic gene networks in mammalian cells.

    abstract::The design and construction of synthetic gene circuits with complex spatiotemporal dynamics was pioneered in bacteria, but it took almost a decade until synthetic biologists were able to construct genetic circuits with complex spatiotemporal dynamics in mammalian cells. This review highlights the most recent advances ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2010.07.006

    authors: Weber W,Fussenegger M

    更新日期:2010-10-01 00:00:00

  • Advances in cellulosic conversion to fuels: engineering yeasts for cellulosic bioethanol and biodiesel production.

    abstract::Cellulosic fuels are expected to have great potential industrial applications in the near future, but they still face technical challenges to become cost-competitive fuels, thus presenting many opportunities for improvement. The economical production of viable biofuels requires metabolic engineering of microbial platf...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2017.11.007

    authors: Ko JK,Lee SM

    更新日期:2018-04-01 00:00:00

  • Metabolic engineering of Saccharomyces cerevisiae for production of butanol isomers.

    abstract::Saccharomyces cerevisiae has decisive advantages in industrial processes due to its tolerance to alcohols and fermentation conditions. Butanol isomers are considered as suitable fuel substitutes and valuable biomass-derived chemical building blocks. Whereas high production was achieved with bacterial systems, metaboli...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2014.09.004

    authors: Generoso WC,Schadeweg V,Oreb M,Boles E

    更新日期:2015-06-01 00:00:00

  • Ligand-binding domain of estrogen receptors.

    abstract::Estrogen receptors are multi-domain proteins that interact with other proteins and DNA to fulfil their function: the regulation of transcription. During the past 2-3 years, our understanding of this complex process has increased tremendously as crystal structures of isolated ligand-binding domains in complex with vari...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(99)00034-8

    authors: Mueller-Fahrnow A,Egner U

    更新日期:1999-12-01 00:00:00

  • Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis.

    abstract::The recent technological advances in next generation sequencing have brought the field closer to the goal of reconstructing all genomes within a community by presenting high throughput sequencing at much lower costs. While these next-generation sequencing technologies have allowed a massive increase in available raw s...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.11.013

    authors: Scholz MB,Lo CC,Chain PS

    更新日期:2012-02-01 00:00:00

  • Decaying signals: will understanding bacterial-plant communications lead to control of soft rot?

    abstract::Soft rot pathogens cause significant losses worldwide in fruit and vegetable production during the growing season and after harvest. These pathogens engage in molecular interactions with their plant hosts via acyl-homoserine lactone (AHL) quorum sensing, pectin metabolites, phenolic acids, and auxin. The AHL-based int...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2009.01.005

    authors: Charkowski AO

    更新日期:2009-04-01 00:00:00

  • Dynamic covalent chemistry in aid of peptide self-assembly.

    abstract::Self-assembled peptide systems have been widely studied in the context of gaining understanding of the rules that govern biomolecular processes and increasingly as new bio-inspired nanomaterials. Such materials may be designed to be highly dynamic, displaying adaptive and self-healing properties. This review focuses o...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.copbio.2010.05.010

    authors: Sadownik JW,Ulijn RV

    更新日期:2010-08-01 00:00:00

  • Recent advances in single-cell studies of gene regulation.

    abstract::A mechanistic understanding of gene regulatory network dynamics requires quantitative single-cell data of multiple network components in response to well-defined perturbations. Recent advances in the development of fluorescent biomarkers for proteins, detection of RNA and interactions, microfluidic technology, and hig...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.11.006

    authors: Selimkhanov J,Hasty J,Tsimring LS

    更新日期:2012-02-01 00:00:00

  • Microbial production of value-added nutraceuticals.

    abstract::Nutraceuticals are important natural bioactive compounds that confer health-promoting and medical benefits to humans. Globally growing demands for value-added nutraceuticals for prevention and treatment of human diseases have rendered nutraceuticals a multi-billion dollar market. However, supply limitations and extrac...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2015.11.003

    authors: Wang J,Guleria S,Koffas MA,Yan Y

    更新日期:2016-02-01 00:00:00

  • Dynamic resolution and stereoinversion of secondary alcohols by chemo-enzymatic processes.

    abstract::To overcome the maximum 50% yield limitation of classical resolution methods, deracemization processes involving a racemization step (dynamic resolution) or a prochiral intermediate (stereoinversion) have been developed. The use of transition metal complexes as racemizing agents, in combination with an enzymatic react...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00144-0

    authors: Azerad R,Buisson D

    更新日期:2000-12-01 00:00:00

  • The role of sigmaB in the stress response of Gram-positive bacteria -- targets for food preservation and safety.

    abstract::The alternative sigma factor sigmaB modulates the stress response of several Gram-positive bacteria, including Bacillus subtilis and the food-borne human pathogens Bacillus cereus, Listeria monocytogenes and Staphylococcus aureus. In all these bacteria, sigmaB is responsible for the transcription of genes that can con...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2005.01.008

    authors: van Schaik W,Abee T

    更新日期:2005-04-01 00:00:00

  • Engineering of silk proteins for materials applications.

    abstract::Silk combines biological properties, such as non-toxicity and biodegradability, with physico-chemical ones, for example, mechanical strength. Base on molecular engineering, nowadays also new non-silk functions can be implemented in silk materials. Driven by rational design and ingenuity, innovative recombinant silk pr...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2019.05.005

    authors: Saric M,Scheibel T

    更新日期:2019-12-01 00:00:00

  • Protein electrophoresis.

    abstract::Many significant advances have occurred recently in the field of protein electrophoresis and related technologies. Improvements have been made in capillary electrophoresis in apparatus design, detection, and capillary modification with coatings and fillers. The transfer of proteins to a blot, the capacity to analyze a...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(93)90024-q

    authors: Zewert TE,Harrington MG

    更新日期:1993-02-01 00:00:00

  • Functional foods and strategies contrasting bacterial adhesion.

    abstract::Antibacterial strategies targeting bacterial adhesion to substrates are considered a valuable alternative to traditional antibiotic therapy, in view of the great advantage they bring in combating the infectious process at the very early stage without selecting for drug resistant cells. Amongst bioactive compounds with...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.08.006

    authors: Signoretto C,Canepari P,Stauder M,Vezzulli L,Pruzzo C

    更新日期:2012-04-01 00:00:00

  • Acquisition and use of calorimetric data for prediction of the thermodynamics of ligand-binding and folding reactions of proteins.

    abstract::The commercialization of high-precision microcalorimeters has led to a sharp increase in the acquisition and utilization of calorimetric data on the binding and folding reactions of proteins. This thermodynamic database, together with high-resolution structures of proteins and their complexes with ligands, has facilit...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(94)90046-9

    authors: Connelly PR

    更新日期:1994-08-01 00:00:00

  • Algae biofuels: versatility for the future of bioenergy.

    abstract::The world continues to increase its energy use, brought about by an expanding population and a desire for a greater standard of living. This energy use coupled with the realization of the impact of carbon dioxide on the climate, has led us to reanalyze the potential of plant-based biofuels. Of the potential sources of...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2011.10.013

    authors: Jones CS,Mayfield SP

    更新日期:2012-06-01 00:00:00

  • Targets for sepsis therapies: tumor necrosis factor versus interleukin-1.

    abstract::Clinical testing of therapies for sepsis that target tumor necrosis factor and interleukin-1 is currently in progress. It is now clear from early clinical results that patients display a heterogeneous response to anti-cytokine therapies that may be related to the stage or severity of disease. Experimental results show...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0958-1669(93)90055-2

    authors: Russell DA,Thompson RC

    更新日期:1993-12-01 00:00:00

  • Genomic analysis.

    abstract::Advances in genomic analysis include improved technology for DNA sequencing, routine use of DNA microarray technology for the analysis of gene expression profiles at the mRNA level and improved informatic tools to organize and analyze such data. At the same time, new developments in chip-based analysis of samples and ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0958-1669(00)00077-x

    authors: Lee PS,Lee KH

    更新日期:2000-04-01 00:00:00

  • Total internal reflection fluorescence microscopy: technical innovations and novel applications.

    abstract::Recent years have seen the introduction of novel techniques and applications of total internal reflection fluorescence microscopy (TIRFM). Key technical achievements include miniaturization, enhanced depth resolution, reduction of detection volumes and the combination of TIRFM with other microscopic techniques. Novel ...

    journal_title:Current opinion in biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.copbio.2004.12.004

    authors: Schneckenburger H

    更新日期:2005-02-01 00:00:00