Abstract:
:Besides the pinpointing of individual disease-related genes, associating protein complexes to human inherited diseases is also of great importance, because a biological function usually arises from the cooperative behaviour of multiple proteins in a protein complex. Moreover, knowledge about disease-related protein complexes could also enhance the inference of disease genes and pathogenic genetic variants. Here, we have designed a computational systems biology approach to systematically analyse potential relationships between diseases and protein complexes. First, we construct a heterogeneous network which is composed of a disease-disease similarity layer, a tissue-specific protein-protein interaction layer, and a protein complex membership layer. Then, we propose a random walk model on this disease-protein-complex network for identifying protein complexes that are related to a query disease. With a series of leave-one-out cross-validation experiments, we show that our method not only possesses high performance but also demonstrates robustness regarding the parameters and the network structure. We further predict a landscape of associations between human diseases and protein complexes. This landscape can be used to facilitate the inference of disease genes, thereby benefiting studies on pathology of diseases.
journal_name
Biomed Res Intjournal_title
BioMed research internationalauthors
Jacquemin T,Jiang Rdoi
10.1155/2013/732650subject
Has Abstractpub_date
2013-01-01 00:00:00pages
732650eissn
2314-6133issn
2314-6141journal_volume
2013pub_type
杂志文章abstract::The mycotoxin zearalenone (ZEN) is a frequent contaminant of animal feeds, but its effects on fish have not yet been investigated extensively. In order to fill this gap a feeding trial with juvenile carp was conducted. Three groups of fish were fed feeds contaminated with ZEN at three concentrations (low: 332 μg kg(-1...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/420702
更新日期:2015-01-01 00:00:00
abstract::The main aim was to analyse the associations between several physical fitness variables and bone parameters in a sample of elderly people. 129 participants (94 females and 35 males, 76.2 ± 5.4 y) from the EXERNET cohort of Zaragoza (Spain) were included in the study. Physical fitness was assessed using the Senior Fitn...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2020/6930682
更新日期:2020-07-15 00:00:00
abstract::It is of great importance to prepare multifunctional scaffolds combining good mechanical strength, bioactivity, and drug delivery ability for bone tissue engineering. In this study, nanosized mesoporous bioglass/poly(lactic-co-glycolic acid) composite-coated calcium silicate scaffolds, named NMBG-PLGA/CS, were success...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2014/323046
更新日期:2014-01-01 00:00:00
abstract::Caudal epidural block is a commonly used technique for surgical anesthesia in children and chronic pain management in adults. It is performed by inserting a needle through the sacral hiatus to gain entrance into the sacral epidural space. Using conventional blind technique, the failure rate of caudal epidural block in...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2017/9217145
更新日期:2017-01-01 00:00:00
abstract::In this study dairy sludge was evaluated as an alternative cultivation medium for Rhizobium. Growth of bacterial strains at different concentrations of Dairy sludge was monitored. Maximum growth of all strains was observed at 60% Dairy sludge concentration. At 60% optical density (OD) values are 0.804 for Rhizobium tr...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2013/845264
更新日期:2013-01-01 00:00:00
abstract::This study included 30 patients with diagnosed rheumatoid arthritis (RA) and 30 test subjects without RA (control group). The objective of the study was to examine both groups for the presence of temporomandibular disorders (TMD) and morphological changes of the temporomandibular joint (TMJ). All individuals were exam...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2014/328560
更新日期:2014-01-01 00:00:00
abstract:INTRODUCTION:Human mesenchymal stromal cells (hMSCs) exhibit the potential to accelerate bone healing by enhanced osteogenic differentiation. Interleukin-1β is highly expressed during fracture healing and has been demonstrated to exert a significant impact on the differentiation behaviour of hMSCs. Here, we investigate...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/714230
更新日期:2015-01-01 00:00:00
abstract::Almost forty years ago, it was first hypothesized that an increased dietary intake of omega-3 polyunsaturated fatty acids (PUFA) from fish fat could exert protective effects against several pathologies. Decades of intense preclinical investigation have supported this hypothesis in a variety of model systems. Several c...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2015/143109
更新日期:2015-01-01 00:00:00
abstract::Angiogenesis plays a decisive role in the growth and spread of cancer and angiopoietin-2 (Ang2) is in the spotlight of studies for its unique role in modulating angiogenesis. The aim of this study was to introduce a computational simulation approach to screen aptamers with high binding ability for Ang2. We carried out...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/658712
更新日期:2015-01-01 00:00:00
abstract:Background:According to several studies, the autoimmune response may lead to osteoarthritis and dyslipidemia and may affect the homeostasis of the human body's internal environment and then cause its own immune regulation. Consequently, the risk of osteoarthritis might be increased by dyslipidemia, but this association...
journal_title:BioMed research international
pub_type: 杂志文章,meta分析
doi:10.1155/2020/3105248
更新日期:2020-02-15 00:00:00
abstract:Background:Identification of potential molecular targets of acute myocardial infarction is crucial to our comprehensive understanding of the disease mechanism. However, studies of gene coexpression analysis via jointing multiple microarray data of acute myocardial infarction still remain restricted. Methods:Microarray...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2019/5742608
更新日期:2019-02-11 00:00:00
abstract::Autophagy is involved in the development of numerous illnesses, including ischemia/reperfusion (I/R). Endothelial nitric oxide synthase (eNOS) participates in the protective effects of ischemic postconditioning (IPostC). However, it remains unclear whether eNOS-mediated autophagy serves as a critical role in IPostC in...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2019/5201014
更新日期:2019-02-10 00:00:00
abstract::Hypolactasia, or intestinal lactase deficiency, affects more than half of the world population. Currently, xylose quantification in urine after gaxilose oral administration for the noninvasive diagnosis of hypolactasia is performed with the hand-operated nonautomatable phloroglucinol reaction. This work demonstrates t...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2017/8421418
更新日期:2017-01-01 00:00:00
abstract::Thirteen individual organochlorine compounds at 3 concentrations (80, 400, and 2000 ng/mL culture medium), as well as mixtures, were assayed for the estrogen receptor (ER) activation or inhibition, using a luciferase reporter gene assay (RGA). None of the PCB 138, 153, or 180 or their mixture induced a response in the...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/438295
更新日期:2015-01-01 00:00:00
abstract::Chromosome/DNA instability could be one of the primary causes of malignant cell transformation. The objective of the present study was to evaluate the spontaneous genetic damages in exfoliated cells of buccal mucosa of head and neck cancer (HNC) by counting micronucleus (MN) and binucleated (BN) cells frequencies. MN ...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2013/905252
更新日期:2013-01-01 00:00:00
abstract::There has been a remarkable interest in finding lipid inhibitors from natural products to replace synthetic compounds, and a variety of oriental medicinal herbs are reported to have biological activity with regard to lipid inhibition. Buginawa (Bugi) is a novel combined formula that contains twelve medicinal herbs wit...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2019/3101987
更新日期:2019-07-30 00:00:00
abstract:INTRODUCTION:The purpose of this study was to describe the clinical and demographic characteristics of UC in Bahia, a Brazilian state, and to identify the variables associated with extensive colitis, steroid therapy, immunosuppression, and colectomy. METHODS:In this cross-sectional study UC patients were interviewed, ...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/359130
更新日期:2015-01-01 00:00:00
abstract::Recent research had shown a correlation between aging and decreasing Gamma-aminobutyric acid (GABA), the primary inhibitory neurotransmitter in the brain. However, how GABA level varies with age in the medial portion of the brain has not yet been studied. The purpose of this study was to investigate the GABA level var...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/6523909
更新日期:2016-01-01 00:00:00
abstract::Hypertrophic Scars (HTSs) are a complex fibroproliferative disorder, and their exact mechanism is still not fully understood. In this study, we first found that cystic fibrosis transmembrane conductance regulator (CFTR) expression was downregulated in human hypertrophic scars at the RNA and protein levels by microarra...
journal_title:BioMed research international
pub_type: 临床试验,杂志文章
doi:10.1155/2020/9526289
更新日期:2020-01-02 00:00:00
abstract::Mitochondria, the energy-generating organelles, play a role in numerous cellular functions including adenosine triphosphate (ATP) production, cellular homeostasis, and apoptosis. Maternal inheritance of mitochondria and mitochondrial DNA (mtDNA) is universally observed in humans and most animals. In general, high leve...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2014/981867
更新日期:2014-01-01 00:00:00
abstract::The incidence of acute kidney injury after cardiac surgery (CS-AKI) ranges from 33% to 94% and is associated with a high incidence of morbidity and mortality. The etiology is suggested to be multifactorial and related to almost all aspects of perioperative management. Numerous studies have reported the risk factors an...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2016/2985148
更新日期:2016-01-01 00:00:00
abstract::The future development of shrimp farming needs to improve its ecoefficiency. The purpose of this study was to evaluate water quality, flows, and nitrogen balance and production parameters on a farm with interconnected pond design to improve the efficiency of the semi-intensive culture of Litopenaeus vannamei ponds. Th...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2015/873748
更新日期:2015-01-01 00:00:00
abstract:OBJECTIVE:Using a swine model of acute myocardial ischemia, we sought to validate N-(11)C-methyl-dopamine ((11)C-MDA) as an agent capable of imaging cardiac sympathetic nerve injury. METHODS:Acute myocardial ischemia was surgically generated in Chinese minipigs. ECG and serum enzyme levels were used to detect the pres...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/8430637
更新日期:2016-01-01 00:00:00
abstract::Primary open angle glaucoma (POAG) is a multifactorial disease characterized by progressive retinal ganglion cell death and visual field loss. It is known that alterations in intraocular pressure (IOP), blood pressure (BP), and ocular perfusion pressure (OPP) can play a significant role in the pathogenesis of the dise...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2015/141905
更新日期:2015-01-01 00:00:00
abstract::Natural medical plant is considered as a good source of tyrosinase inhibitors. Red vine leaf extract (RVLE) can be applied to a wide variety of medical disciplines, such as treatments for chronic venous insufficiency over many decades. This study investigated the tyrosinase inhibitory activity of RVLE containing galli...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2017/5232680
更新日期:2017-01-01 00:00:00
abstract::Chronic obstructive pulmonary disease (COPD) and lung cancer, closely related to smoking, are major lung diseases affecting millions of individuals worldwide. The generated gas mixture of smoking is proved to contain about 4,500 components such as carbon monoxide, nicotine, oxidants, fine particulate matter, and aldeh...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2019/2025636
更新日期:2019-06-24 00:00:00
abstract::Background. Surgical treatment of proximal humeral fractures (PHF) in osteoporotic bone of elderly patients is challenging. The aim of this retrospective study was to evaluate the clinical and radiological outcome after percutaneous reduction and internal fixation of osteoporotic PHF in geriatric patients using the se...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2016/6451849
更新日期:2016-01-01 00:00:00
abstract:OBJECTIVE:Data about endocrine and bone disease in nontransfusion-dependent thalassaemia (NTDT) is scanty. The aim of our study was to evaluate these complications in β-TI adult patients. METHODS:We studied retrospectively 70 β-TI patients with mean followup of 20 years. Data recorded included age, gender, haemoglobin...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2014/174581
更新日期:2014-01-01 00:00:00
abstract::Myricetin has been reported as a promising chemopreventive compound with multiple biofunctions. To evaluate its influence on gene expressions in genome-wide set and further investigate its anti-inflammatory property, the present study performed Gene Ontology and Ingenuity Pathway Analysis (IPA) to describe the basic g...
journal_title:BioMed research international
pub_type: 杂志文章
doi:10.1155/2019/3746326
更新日期:2019-03-07 00:00:00
abstract::The objective of the current research was to review and update evidence on the dietary effect of the consumption of tagatose in type 2 diabetes, as well as to elucidate the current approach that exists on its production and biotechnological utility in functional food for diabetics. Articles published before July 1, 20...
journal_title:BioMed research international
pub_type: 杂志文章,评审
doi:10.1155/2018/8718053
更新日期:2018-01-09 00:00:00