A highly accurate symmetric optical flow based high-dimensional nonlinear spatial normalization of brain images.

Abstract:

:Spatial normalization plays a key role in voxel-based analyses of brain images. We propose a highly accurate algorithm for high-dimensional spatial normalization of brain images based on the technique of symmetric optical flow. We first construct a three dimension optical model with the consistency assumption of intensity and consistency of the gradient of intensity under a constraint of discontinuity-preserving spatio-temporal smoothness. Then, an efficient inverse consistency optical flow is proposed with aims of higher registration accuracy, where the flow is naturally symmetric. By employing a hierarchical strategy ranging from coarse to fine scales of resolution and a method of Euler-Lagrange numerical analysis, our algorithm is capable of registering brain images data. Experiments using both simulated and real datasets demonstrated that the accuracy of our algorithm is not only better than that of those traditional optical flow algorithms, but also comparable to other registration methods used extensively in the medical imaging community. Moreover, our registration algorithm is fully automated, requiring a very limited number of parameters and no manual intervention.

journal_name

Magn Reson Imaging

authors

Wen Y,Hou L,He L,Peterson BS,Xu D

doi

10.1016/j.mri.2015.01.013

subject

Has Abstract

pub_date

2015-05-01 00:00:00

pages

465-73

issue

4

eissn

0730-725X

issn

1873-5894

pii

S0730-725X(15)00018-1

journal_volume

33

pub_type

杂志文章
  • Pharmacokinetic analysis of glioma compartments with dynamic Gd-DTPA-enhanced magnetic resonance imaging.

    abstract::Dynamic contrast-enhanced magnetic resonance imaging (MRI) is widely used for measuring perfusion and blood volume, especially cerebral blood volume (CBV). In case of blood-brain barrier (BBB) disruption, the conventional techniques only partially determine the pharmacokinetic parameters of contrast medium (CM) exchan...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(00)00223-x

    authors: Lüdemann L,Hamm B,Zimmer C

    更新日期:2000-12-01 00:00:00

  • NMR in rotating magnetic fields: magic-angle field spinning.

    abstract::Magic-angle sample spinning is one of the cornerstones in high-resolution NMR of solid and semisolid materials. The technique enhances spectral resolution by averaging away rank 2 anisotropic spin interactions, thereby producing isotropic-like spectra with resolved chemical shifts and scalar couplings. In principle, i...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2004.11.067

    authors: Sakellariou D,Meriles CA,Martin RW,Pines A

    更新日期:2005-02-01 00:00:00

  • Complimentary aspects of diffusion imaging and fMRI: II. Elucidating contributions to the fMRI signal with diffusion sensitization.

    abstract::Tissue water molecules reside in different biophysical compartments. For example, water molecules in the vasculature reside for variable periods of time within arteries, arterioles, capillaries, venuoles and veins, and may be within blood cells or blood plasma. Water molecules outside of the vasculature, in the extrav...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章,评审

    doi:10.1016/j.mri.2007.02.006

    authors: Mulkern RV,Haker SJ,Maier SE

    更新日期:2007-07-01 00:00:00

  • Diffusion of water in industrial cement and concrete.

    abstract::We propose a deuterium diffusion tracer approach to measure diffusion coefficient in the case of very short NMR relaxation times, too short for NMR pulsed field gradient sequences (T1 or T2 below 1 ms). We also treat the case of porous media containing metallic fibers (such as reinforced concrete) strongly disturbing ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2018.09.010

    authors: Fleury M,Berthe G,Chevalier T

    更新日期:2019-02-01 00:00:00

  • Simultaneous acquisition of multiple orders of intermolecular multiple-quantum coherence images in vivo.

    abstract::Until recently, NMR imaging with intermolecular multiple-quantum coherences (iMQCs) has been based on the acquisition of a single echo. In vivo studies of iMQC image contrast would greatly benefit from a method that could acquire several orders of quantum coherence during the same acquisition. This would enable compar...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2004.10.019

    authors: Shannon KL,Branca RT,Galiana G,Cenzano S,Bouchard LS,Soboyejo W,Warren WS

    更新日期:2004-12-01 00:00:00

  • T2* measurements in human brain at 1.5, 3 and 7 T.

    abstract::Measurements have been carried out in six subjects at magnetic fields of 1.5, 3 and 7 T, with the aim of characterizing the variation of T2* with field strength in human brain. Accurate measurement of T2* in the presence of macroscopic magnetic field inhomogeneity is problematic due to signal decay resulting from thro...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2007.02.014

    authors: Peters AM,Brookes MJ,Hoogenraad FG,Gowland PA,Francis ST,Morris PG,Bowtell R

    更新日期:2007-07-01 00:00:00

  • Automated classification of multispectral MR images using unsupervised constrained energy minimization based on fuzzy logic.

    abstract::Constrained energy minimization (CEM) has proven highly effective for hyperspectral (or multispectral) target detection and classification. It requires a complete knowledge of the desired target signature in images. This work presents "Unsupervised CEM (UCEM)," a novel approach to automatically target detection and cl...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2010.03.009

    authors: Lin GC,Wang CM,Wang WJ,Sun SY

    更新日期:2010-06-01 00:00:00

  • Accurate and sensitive measurements of magnetic susceptibility using echo planar imaging.

    abstract::Susceptibility differences are common causes for artifacts in magnetic resonance (MR); therefore, it is important to choose phantom materials in a way that these artifacts are kept at a minimum. In this study, a previously proposed MR imaging (MRI) method [Beuf O, Briguet A, Lissac M, Davis R. Magnetic resonance imagi...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2006.07.005

    authors: Carlsson A,Starck G,Ljungberg M,Ekholm S,Forssell-Aronsson E

    更新日期:2006-11-01 00:00:00

  • Magnetic resonance T2* measurements of the normal human lung in vivo with ultra-short echo times.

    abstract::The objective of this study was to measure T2* values of the normal human lung in vivo during breathhold using a rapid gradient-echo sequence with ultra-short echo times (TE). A sagittal slice of the right lung was imaged in six volunteers with various TE ranging from 0.5 ms to 5 ms using a clinical 1.5 Tesla MR scann...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(99)00047-8

    authors: Stock KW,Chen Q,Hatabu H,Edelman RR

    更新日期:1999-09-01 00:00:00

  • High-resolution gadolinium-enhanced 3D MRA of the infrapopliteal arteries. Lessons for improving bolus-chase peripheral MRA.

    abstract::Peripheral magnetic resonance angiography (MRA) is growing in use. However, methods of performing peripheral MRA vary widely and continue to be optimized, especially for improvement in illustration of infrapopliteal arteries. The main purpose of this project was to identify imaging factors that can improve arterial vi...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(02)00531-3

    authors: Hood MN,Ho VB,Foo TK,Marcos HB,Hess SL,Choyke PL

    更新日期:2002-09-01 00:00:00

  • Fast Field Echo imaging: an overview and contrast calculations.

    abstract::Current fast imaging techniques are based on gradient echo sequences with reduced flip angle excitation pulses and very short repetition times TR. Practical T2 values may be of the order of TR or longer. In this situation, a different image contrast can be obtained, depending on details of the sequence. Four essential...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章,评审

    doi:10.1016/0730-725x(88)90472-9

    authors: van der Meulen P,Groen JP,Tinus AM,Bruntink G

    更新日期:1988-07-01 00:00:00

  • Rapid whole-brain quantitative magnetization transfer imaging using 3D selective inversion recovery sequences.

    abstract::Selective inversion recovery (SIR) is a quantitative magnetization transfer (qMT) method that provides estimates of parameters related to myelin content in white matter, namely the macromolecular pool-size-ratio (PSR) and the spin-lattice relaxation rate of the free pool (R1f), without the need for independent estimat...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2020.01.014

    authors: Cronin MJ,Xu J,Bagnato F,Gochberg DF,Gore JC,Dortch RD

    更新日期:2020-05-01 00:00:00

  • Cardiac magnetic resonance tissue tracking in right ventricle: Feasibility and normal values.

    abstract:PURPOSE:To investigate right ventricular (RV) strain in patients without identified cardiac pathology using cardiac magnetic resonance tissue tracking (CMR TT). METHODS:A total of 50 consecutive patients with no identified cardiac pathology were analyzed. RV longitudinal and circumferential strain was assessed by CMR ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2017.01.007

    authors: Truong VT,Safdar KS,Kalra DK,Gao X,Ambach S,Taylor MD,Moore R,Taylor RJ,Germann J,Toro-Salazar O,Jefferies JL,Bartone C,Raman SV,Ngo T,Mazur W

    更新日期:2017-05-01 00:00:00

  • Noninvasive evaluation of radiation-enhanced glioma cells invasiveness by ultra-high-field (1)H-MRS in vitro.

    abstract:INTRODUCTION:Glioma is the most common type of the primary CNS tumor. Radiotherapy is an important treatment measure after surgery. However, its highly invasive character is the main reason of postoperative recurrence. The aim of the study was to probe the correlation between the invasion ability and the metabolite cha...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2016.05.009

    authors: Xu YJ,Cui Y,Li HX,Shi WQ,Li FY,Wang JZ,Zeng QS

    更新日期:2016-10-01 00:00:00

  • Spectral pattern of total creatine and trimethyl ammonium in multiple sclerosis.

    abstract::Fatigue and impairment mobility are frequent problems in multiple sclerosis (MS). Despite its enormous potential, in vivo (1)H MRS of skeletal muscles for MS patients is a largely unexplored field. One fundamental question remains unanswered: whether MS can cause observable proton metabolite changes. High quality two-...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2004.01.005

    authors: Hu J,Xu Y,Jiang Q,Sehgal V,Shen Y,Xuan Y,Xia Y

    更新日期:2004-04-01 00:00:00

  • Wavelet-based characterization of vertebral trabecular bone structure from magnetic resonance images at 3 T compared with micro-computed tomographic measurements.

    abstract::Trabecular bone structure and bone density contribute to the strength of bone and are important in the study of osteoporosis. Wavelets are a powerful tool in characterizing and quantifying texture in an image. The purpose of this study was to validate wavelets as a tool in computing trabecular bone thickness directly ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2006.09.020

    authors: Krug R,Carballido-Gamio J,Burghardt AJ,Haase S,Sedat JW,Moss WC,Majumdar S

    更新日期:2007-04-01 00:00:00

  • Non-Gaussian diffusion MRI assessment of brain microstructure in mild cognitive impairment and Alzheimer's disease.

    abstract::We report the first application of a novel diffusion-based MRI method, called diffusional kurtosis imaging (DKI), to investigate changes in brain tissue microstructure in patients with mild cognitive impairment (MCI) and AD and in cognitively intact controls. The subject groups were characterized and compared in terms...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2013.02.008

    authors: Falangola MF,Jensen JH,Tabesh A,Hu C,Deardorff RL,Babb JS,Ferris S,Helpern JA

    更新日期:2013-07-01 00:00:00

  • MRI-assisted radiation therapy planning of brain tumors--clinical experiences in 17 patients.

    abstract::A new and simple method for precise determination of lateral opposed treatment portals was developed and used in 17 patients. Compared to CT, MRI led to significant changes of portals in 59% (10/17) of cases. Individual shielding blocks could be precisely designed by use of our new method. MRI is the procedure of choi...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(91)90007-9

    authors: Just M,Rösler HP,Higer HP,Kutzner J,Thelen M

    更新日期:1991-01-01 00:00:00

  • Biodistribution of GdCl3 and Gd-DTPA and their influence on proton magnetic relaxation in rat tissues.

    abstract::The biodistribution and relative molar effectiveness of the ionic (GdCl3) and chelated (Gd-DTPA) forms of gadolinium (Gd) to enhance proton relaxation rates in rat kidney, liver and spleen were evaluated. Rats were given intravenous injections of either GdCl3 (100 mumol/kg) or Gd-DTPA (178 mumol/kg). Gd-DTPA was prima...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(87)90023-3

    authors: Barnhart JL,Kuhnert N,Bakan DA,Berk RN

    更新日期:1987-01-01 00:00:00

  • Diffusion-weighted imaging versus superparamagnetic iron oxide (SPIO)-enhanced MRI: exclusive and combined values in the assessment of hepatic metastases.

    abstract:PURPOSE:The purpose was to validate diffusion-weighted imaging (DWI) in the assessment of hepatic metastases compared with superparamagnetic iron oxide (SPIO)-enhanced magnetic resonance imaging. MATERIALS AND METHODS:For 21 consecutive patients with 160 metastases from extrahepatic malignancy and 25 benign focal lesi...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2011.12.007

    authors: Kim H,Yu JS,Cho ES,Chung JJ,Kim JH,Kim DJ,Ahn JH,Kim KW

    更新日期:2012-05-01 00:00:00

  • Electric stimulation fMRI of the perforant pathway to the rat hippocampus.

    abstract::The hippocampal formation is a brain system that is implicated in learning and memory. The major input to the hippocampus arrives from the entorhinal cortex (EC) to the dentate gyrus (DG) through the perforant path. In the present work, we have investigated the functional properties of this connection by concomitantly...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2008.02.018

    authors: Canals S,Beyerlein M,Murayama Y,Logothetis NK

    更新日期:2008-09-01 00:00:00

  • Detection of mycotic pseudoaneurysm of the ascending aorta using MRI.

    abstract::Mycotic pseudoaneurysms of the ascending aorta are rare cardiovascular lesions that carry the risk of potentially disastrous complications such as aortic rupture or widespread sepsis. Regardless of its location in the arterial system, this lesion carries a high mortality rate. Early diagnosis of mycotic pseudoaneurysm...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(93)90251-8

    authors: McCuskey WH,Loehr SP,Smidebush GC,Link KM

    更新日期:1993-01-01 00:00:00

  • The NMR-MOUSE: quality control of elastomers.

    abstract::New applications of the NMR-MOUSE (mobile universal surface explorer) to non-destructive quality control of elastomers are reported. One example concern the thermal aging of fast clutches which was probed by measurements of 1H transverse relaxation time. Novel methodological developments show that 1H double-quantum fi...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(01)00277-6

    authors: Kühn H,Klein M,Wiesmath A,Demco DE,Blümich B,Kelm J,Gold PW

    更新日期:2001-04-01 00:00:00

  • High-speed spectroscopic imaging for cancellous bone marrow R(2)* mapping and lipid quantification.

    abstract::In this work an interleaved multiple-gradient-echo chemical shift imaging (IMGE-CSI) technique was designed, implemented and evaluated at 1.5 and 4T for high-resolution lipid quantification and R(2)* measurement in-vivo. The method is analogous to echo planar CSI but utilizes conventional gradient echoes, exploiting t...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(00)00165-x

    authors: Hilaire L,Wehrli FW,Song HK

    更新日期:2000-09-01 00:00:00

  • Dependence of temporal diffusion spectra on microstructural properties of biological tissues.

    abstract::The apparent diffusion coefficient (ADC) measured using magnetic resonance imaging methods provides information on microstructural properties of biological tissues, and thus has found applications as a useful biomarker for assessing changes such as those that occur in ischemic stroke and cancer. Conventional pulsed gr...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2010.10.002

    authors: Xu J,Does MD,Gore JC

    更新日期:2011-04-01 00:00:00

  • Skeletal muscle lymphoma: MRI evaluation.

    abstract::The magnetic resonance imaging (MRI) features of two cases of malignant lymphoproliferative disease involving skeletal muscle are presented. In both cases involved muscles were quantitatively and subjectively hypointense to fat on T1-weighted spin echo images, hypointense or isointense on T2-weighted spin echo images,...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(92)90522-2

    authors: Metzler JP,Fleckenstein JL,Vuitch F,Frenkel EP

    更新日期:1992-01-01 00:00:00

  • Noise estimation in single- and multiple-coil magnetic resonance data based on statistical models.

    abstract::Noise estimation is a challenging task in magnetic resonance imaging (MRI), with applications in quality assessment, filtering or diffusion tensor estimation. Main noise estimators based on the Rician model are revisited and classified in this article, and new useful methods are proposed. Additionally, all the surveye...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/j.mri.2009.05.025

    authors: Aja-Fernández S,Tristán-Vega A,Alberola-López C

    更新日期:2009-12-01 00:00:00

  • Differentiation of hepatic cavernous hemangioma from metastases by rare sequence MR imaging.

    abstract::In this study, in order to differentiate cavernous hemangioma and hepatic metastases, rapid acquisition relaxation enhanced (RARE) sequence was used. First, in vivo measurements of T1, T2 relaxation times and proton density were obtained using T1, T2 calculation protocol (TOMIKON S50, 0.5T) and multipoint techniques. ...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/s0730-725x(99)00008-9

    authors: Jafari F,Nayeri N,Tahsini M,Khodadoust AA

    更新日期:1999-06-01 00:00:00

  • Fast T2-mapping with snapshot flash imaging.

    abstract::It has been shown recently that quantitative T2-maps may be measured by acquisition of a series of at least eight T2-weighted SNAPSHOT FLASH images. These measurements require a relaxation delay of 10-15 s after each T2-weighted image for the complete relaxation of the spin system. This results in long measuring times...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(95)00004-z

    authors: Deichmann R,Adolf H,Nöth U,Morrissey S,Schwarzbauer C,Haase A

    更新日期:1995-01-01 00:00:00

  • Proton MR properties of lyophilized urine samples from normal and stone former individuals.

    abstract::Proton MR measurements were performed in lyophilized urine samples collected from 5 normals (N) and 5 idiopathic hypercalciuric recurrent stone formers (SF). T1 and T2 relaxation times were measured with a Bruker PC Multispec at 20 MHz and 37 degrees C in the lyophilized samples and in samples gradually rehydrated. Si...

    journal_title:Magnetic resonance imaging

    pub_type: 杂志文章

    doi:10.1016/0730-725x(88)90522-x

    authors: Azoury R,Abrashkin S,Weininger J,Iaina A

    更新日期:1988-01-01 00:00:00