Polyadenylation function and sequence variability of the long terminal repeats of the human endogenous retrovirus-like family RTVL-H.

Abstract:

:The RTVL-H family of human endogenous retrovirus-like sequences consists of approximately 1000 "full-length" elements and at least as many solitary RTVL-H related long terminal repeats (LTRs). We have characterized cDNA clones from two human cell libraries (Hep-2 and normal peripheral blood) and have found three clones in which the AATAAA signal within the RTVL-H LTR has functioned to polyadenylate the transcript. In two of these cases the LTR has provided the polyadenylation signal for non-RTVL-H initiated transcriptional units. The DNA sequences of the LTR regions from these three cDNA clones are significantly different from a consensus LTR sequence generated from 10 genomic LTRs. In fact, two of these cDNA-derived LTRs, although closely related to each other, have a subregion within them which is not found in the genomic LTRs that have been analyzed. LTRs containing this subregion, termed type II LTRs, comprise approximately 25% of the total genomic LTR population. In stable DNA transfection experiments, both a type I and a type II LTR were able to donate a functional polyadenylation signal to a neomycin resistance gene. In LTR-positive placental cDNA clones, type II LTRs were found more frequently than expected from their genomic abundance. These findings suggest that RTVL-H LTRs may provide 3' processing signals for a variety of human RNAs. They also indicate that at least one distinct subpopulation of RTVL-H LTRs can be distinguished and suggest that this or other subpopulations may have different functional capacities in different human cells.

journal_name

Virology

journal_title

Virology

authors

Mager DL

doi

10.1016/0042-6822(89)90570-9

subject

Has Abstract

pub_date

1989-12-01 00:00:00

pages

591-9

issue

2

eissn

0042-6822

issn

1096-0341

pii

0042-6822(89)90570-9

journal_volume

173

pub_type

杂志文章

相关文献

VIROLOGY文献大全
  • Minimum requirements for specific binding of RNA and coat protein of alfalfa mosaic virus.

    abstract::Coat protein-protected fragments of alfalfa mosaic virus RNA (AlMV-RNA) and tobacco streak virus RNA (TSV-RNA), which were isolated as described [D. Zuidema, M. F. A. Bierhuizen, B. J. C. Cornelissen, J. F. Bol, and E. M. J. Jaspars (1983)Virology, 125, 361-369], were tested for their ability to rebind AlMV coat prote...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(84)90165-x

    authors: Zuidema D,Cool RH,Jaspars EM

    更新日期:1984-07-30 00:00:00

  • Mutations in VP2 and VP1 capsid proteins increase infectivity and mouse lethality of enterovirus 71 by virus binding and RNA accumulation enhancement.

    abstract::Enterovirus 71 (EV71) is a major cause of hand-foot-and-mouth disease. EV71 infection occasionally associates with severe neurological sequelae such as brainstem encephalitis or poliovirus-like paralysis. We demonstrated that mouse-adapted strain increases infectivity, resulting in higher cytotoxicity of neuron cells ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.10.015

    authors: Huang SW,Wang YF,Yu CK,Su IJ,Wang JR

    更新日期:2012-01-05 00:00:00

  • Modulation of type I IFN induction by a virulence determinant within the alphavirus nsP1 protein.

    abstract::Alphaviruses are mosquito-borne viruses that cause serious human and animal diseases. Previous studies demonstrated that a determinant within the nsP1/nsP2 cleavage domain of the virulent Sindbis AR86 virus played a key role in regulating adult mouse virulence without adversely affecting viral replication. Additional ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.12.031

    authors: Cruz CC,Suthar MS,Montgomery SA,Shabman R,Simmons J,Johnston RE,Morrison TE,Heise MT

    更新日期:2010-03-30 00:00:00

  • Hepatitis B virus polymerase suppresses translation of pregenomic RNA via a mechanism involving its interaction with 5' stem-loop structure.

    abstract::The pregenomic RNA (pgRNA) of hepadnaviruses serves a dual role: as mRNA for the core (C) and polymerase (P) synthesis and as an RNA template for viral genome replication. A question arises as to how these two roles are regulated. We hypothesized that the P protein could suppress translation of the pgRNA via its inter...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.11.010

    authors: Ryu DK,Kim S,Ryu WS

    更新日期:2008-03-30 00:00:00

  • Loss of dimerisation of the nonstructural protein NS1 of Kunjin virus delays viral replication and reduces virulence in mice, but still allows secretion of NS1.

    abstract::The flavivirus nonstructural protein NS1 has been implicated in viral RNA replication, although its precise role has not been identified. In its native state NS1 exists as a heat labile homodimer that is thought to be required for NS1 function and secretion. However, we have recently identified a cDNA clone of KUN vir...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.9956

    authors: Hall RA,Khromykh AA,Mackenzie JM,Scherret JH,Khromykh TI,Mackenzie JS

    更新日期:1999-11-10 00:00:00

  • A new method for reconstituting influenza polymerase and RNA in vitro: a study of the promoter elements for cRNA and vRNA synthesis in vitro and viral rescue in vivo.

    abstract::The influenza RNA polymerase is known to catalyse three distinct copying activities: (i) transcription of minus-sense virion RNA (vRNA) into mRNA, (ii) transcription of vRNA into full-length complementary RNA (cRNA), and (iii) transcription of cRNA to vRNA. Ever since the discovery of the conserved 13 and 12 long sequ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(92)90079-5

    authors: Seong BL,Brownlee GG

    更新日期:1992-01-01 00:00:00

  • Experimental confirmation of a hepatitis B virus (HBV) epsilon-like bulge-and-loop structure in avian HBV RNA encapsidation signals.

    abstract::Hepatitis B viruses replicate via reverse transcription of an RNA intermediate. This RNA pregenome serves as mRNA and is packaged into capsids and reverse transcribed. Both processes require the interaction of the viral reverse transcriptase, P protein, with the 5'-proximal epsilon-signals on the pregenome. For epsilo...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1996.8329

    authors: Beck J,Bartos H,Nassal M

    更新日期:1997-01-20 00:00:00

  • Porcine endogenous retroviruses inhibit human immune cell function: risk for xenotransplantation?

    abstract::Transgenic pigs are currently the most favored potential source of organs for xenotransplantation. Like all mammalian species they all harbor endogenous retroviruses in their genome. These porcine endogenous retroviruses (PERVs) are produced from several primary cells and cell lines and are able to infect human cells....

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.0149

    authors: Tacke SJ,Kurth R,Denner J

    更新日期:2000-03-01 00:00:00

  • Isolation of mutations of the phage Mu ner gene.

    abstract::A method was devised which allows the easy detection of mutations within the ner gene of Mu DNA. This method is based upon the observation that a transcriptional gene A-galK fusion containing the complete ner gene and the cts62 allele does not express the galK gene in an Escherichia coli strain lacking functional inte...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(88)90621-6

    authors: König U,Kirschner P,Schumann W

    更新日期:1988-05-01 00:00:00

  • Antigenic variation in the hemagglutinin-neuraminidase protein of human parainfluenza type 3 virus.

    abstract::Sixteen monoclonal antibodies directed to the hemagglutinin-neuraminidase (HN) protein of a 1957 isolate of parainfluenza type 3 virus (PIV3) were produced and used to examine antigenic variation in clinical strains. Analysis of hemagglutination-inhibition reactivity patterns of antigenic variants selected in vitro in...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(85)90395-2

    authors: van Wyke Coelingh KL,Winter C,Murphy BR

    更新日期:1985-06-01 00:00:00

  • Emergence and epidemic occurrence of enterovirus 68 respiratory infections in The Netherlands in 2010.

    abstract::Following an increase in detection of enterovirus 68 (EV68) in community surveillance of respiratory infections in The Netherlands in 2010, epidemiological and virological analyses were performed to investigate the possible public health impact of EV68 infections. We retrospectively tested specimens collected from acu...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2011.11.021

    authors: Meijer A,van der Sanden S,Snijders BE,Jaramillo-Gutierrez G,Bont L,van der Ent CK,Overduin P,Jenny SL,Jusic E,van der Avoort HG,Smith GJ,Donker GA,Koopmans MP

    更新日期:2012-02-05 00:00:00

  • Vaccinia virus temperature-sensitive mutants in the A28 gene produce non-infectious virions that bind to cells but are defective in entry.

    abstract::The vaccinia virus temperature-sensitive mutations Cts6 and Cts9 were mapped by marker rescue and DNA sequencing to the A28 gene. Cts6 and Cts9 contain an identical 2-bp deletion truncating the A28 protein and removing the fourth conserved cysteine near the C-terminus. Cts9 mutant virions produced at 40 degrees C were...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2007.03.060

    authors: Turner PC,Dilling BP,Prins C,Cresawn SG,Moyer RW,Condit RC

    更新日期:2007-09-15 00:00:00

  • In vitro synthesis of biologically active beet necrotic yellow vein virus RNA.

    abstract::Beet necrotic yellow vein virus (BNYVV) has a quadripartite plus-strand RNA genome in which the two smallest genome components, RNA 3 and 4, are not necessary for virus multiplication in leaves. Infectious transcripts of BNYVV RNA 3 and 4 have already been described (V. Ziegler-Graff, S. Bouzoubaa, I. Jupin, H. Guille...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90131-1

    authors: Quillet L,Guilley H,Jonard G,Richards K

    更新日期:1989-09-01 00:00:00

  • Mutational analysis of the coat protein gene of tobacco mosaic virus in relation to hypersensitive response in tobacco plants with the N' gene.

    abstract::Tomato strain L of tobacco mosaic virus (TMV-L) induces a hypersensitive response (necrotic local lesions) on tobacco plants with the N' gene. A factor responsible for induction of the hypersensitive response has been mapped to the coat protein gene. We have constructed several mutants which have insertions or deletio...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(89)90217-1

    authors: Saito T,Yamanaka K,Watanabe Y,Takamatsu N,Meshi T,Okada Y

    更新日期:1989-11-01 00:00:00

  • Analysis of human immunodeficiency virus type 1 promoter insertion in vivo.

    abstract::Our study reports the occurrence of HIV-1 insertional activation events in vivo. Using a previously described PCR assay, small aliquots of broncho-alveolar lavage (BAL) cells obtained from AIDS patients were analyzed. Nine percent (5/54) of the aliquots contained proviral-host sequence transcripts indicating HIV-1 pro...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1995.1161

    authors: Raineri I,Solèr M,Senn HP

    更新日期:1995-04-01 00:00:00

  • A simple technique for the rescue of early region I mutations into infectious human adenovirus type 5.

    abstract::Early region 1 (E1) of the human adenoviruses has many intriguing properties which have prompted numerous mutational studies to help delineate and characterize the domains responsible for these functions. In mutational analyses being done currently, the E1 region is usually cloned into a bacterial plasmid where it is ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(88)90302-9

    authors: McGrory WJ,Bautista DS,Graham FL

    更新日期:1988-04-01 00:00:00

  • Some biological and physicochemical properties of blue-green algal virus LPP-1.

    abstract::Adsorption and one-step growth experiments performed with blue-green algal virus (BGAV) LPP-1 under normal conditions revealed a slow adsorption rate, in comparison with bacteriophage systems, followed by a 7-hour latent period. The burst size was approximately 100 virus particles per cell. The molecular weight of the...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(67)90036-0

    authors: Goldstein DA,Bendet IJ,Lauffer MA,Smith KM

    更新日期:1967-08-01 00:00:00

  • Functional properties of the fusion and attachment glycoproteins of Nipah virus.

    abstract::Nipah virus (NV) and Hendra virus (HV) are recently emergent, related viruses that can cause severe disease in humans and animals. The goal of this study was to investigate the immunogenic and functional properties of the fusion (F) and attachment (G) glycoproteins of NV. Vaccination of mice with recombinant vaccinia ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2002.1418

    authors: Tamin A,Harcourt BH,Ksiazek TG,Rollin PE,Bellini WJ,Rota PA

    更新日期:2002-04-25 00:00:00

  • Biological properties of herpes simplex virus 2 replication-defective mutant strains in a murine nasal infection model.

    abstract::We used a mouse nasal model of herpes simplex virus 2 (HSV-2) infection to examine the biological properties of HSV-2 wild-type (wt), TK-negative, and replication-defective strains in vivo. Nasal septa tissue is the major site of wt viral replication post intranasal (i.n.) inoculation. The HSV-2 strain 186 syn(+)-1 wt...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.2000.0628

    authors: Jones CA,Taylor TJ,Knipe DM

    更新日期:2000-12-05 00:00:00

  • Induction of cell death by tospoviral protein NSs and the motif critical for cell death does not control RNA silencing suppression activity.

    abstract::Groundnut bud necrosis virus induces necrotic symptoms in different hosts. Previous studies showed reactive oxygen species-mediated programmed cell death (PCD) resulted in necrotic symptoms. Transgenic expression of viral protein NSs mimics viral symptoms. Here, we showed a role for NSs in influencing oxidative burst ...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2017.05.003

    authors: Singh A,Permar V,Jain RK,Goswami S,Kumar RR,Canto T,Palukaitis P,Praveen S

    更新日期:2017-08-01 00:00:00

  • Autographa californica M nuclear polyhedrosis virus: microtubules and replication.

    abstract::Progressive reorganization and depolymerization of microtubules corresponded with virus-induced rounding of Autographa californica M nuclear polyhedrosis virus (AcMNPV)-infected Spodoptera frugiperda IPLB-Sf-21 cells, suggesting that microtubules were instrumental in maintaining the normal shape of these cells. Depoly...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90211-9

    authors: Volkman LE,Zaal KJ

    更新日期:1990-03-01 00:00:00

  • TLR5 stimulation is sufficient to trigger reactivation of latent HIV-1 provirus in T lymphoid cells and activate virus gene expression in central memory CD4+ T cells.

    abstract::When effector CD4+ T cells carrying integrated HIV-1 proviruses revert back to a resting memory state, the virus can remain silent in those cells for years. Following re-exposure to the nominal antigen or in response to other stimuli (e.g. pro-inflammatory cytokines), these cells can begin to produce virus. Here we de...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2009.04.019

    authors: Thibault S,Imbeault M,Tardif MR,Tremblay MJ

    更新日期:2009-06-20 00:00:00

  • Conserved aromatic residues of the hepatitis B virus Precore propeptide are involved in a switch between distinct dimeric conformations and essential in the formation of heterocapsids.

    abstract::The Hepatitis B virus Precore protein, present in the secretory pathway as the HBeAg precursor, can associate in the cytoplasm with the Core protein to form heterocapsids, likely to favor viral persistence. Core and Precore proteins share their primary sequence except for ten additional aminoacids at the N-terminus of...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2014.06.013

    authors: Duriez M,Thouard A,Bressanelli S,Rossignol JM,Sitterlin D

    更新日期:2014-08-01 00:00:00

  • Assembly of HIV GAG-B-galactosidase fusion proteins into virus particles.

    abstract::We have studied the assembly of human immunodeficiency virus (HIV-1) Gag-B-galactosidase (Gag-B-gal; GBG) fusion proteins into HIV particles in the presence of HIV Gag proteins. Release of fusion proteins from cells was measured by assay of media versus cellular B-gal activities and was dependent on co-expression of u...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1994.1215

    authors: Wang CT,Stegeman-Olsen J,Zhang Y,Barklis E

    更新日期:1994-05-01 00:00:00

  • Map location of lactate dehydrogenase-elevating virus (LDV) capsid protein (Vp1) gene.

    abstract::Lactate dehydrogenase-elevating virus (LDV) is currently classified within the Togaviridae family. In an effort to obtain further information on the characteristics of this virus, we have begun to sequence the viral RNA genome and to map the virion structural protein genes. A sequence of 1064 nucleotides, which repres...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(90)90546-4

    authors: Godeny EK,Speicher DW,Brinton MA

    更新日期:1990-08-01 00:00:00

  • The hypervariable region 1 protein of hepatitis C virus broadly reactive with sera of patients with chronic hepatitis C has a similar amino acid sequence with the consensus sequence.

    abstract::Hypervariable region 1 (HVR1) proteins of hepatitis C virus (HCV) have been reported to react broadly with sera of patients with HCV infection. However, the variability of the broad reactivity of individual HVR1 proteins has not been elucidated. We assessed the reactivity of 25 different HVR1 proteins (genotype 1b) wi...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1999.0004

    authors: Watanabe K,Yoshioka K,Ito H,Ishigami M,Takagi K,Utsunomiya S,Kobayashi M,Kishimoto H,Yano M,Kakumu S

    更新日期:1999-11-10 00:00:00

  • Identification of major antigenic domains of duck hepatitis B virus pre-S protein by peptide scanning.

    abstract::Neutralization epitopes of duck hepatitis B virus (DHBV) have been previously mapped within the N-terminal portion of the pre-S protein using monoclonal antibodies. However, the immune response of ducks to this region is not well characterized at the amino acid level. To this end, we have immunized adult Pekin ducks w...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1994.1164

    authors: Chassot S,Lambert V,Kay A,Godinot C,Trepo C,Cova L

    更新日期:1994-04-01 00:00:00

  • Two novel epistatic mutations (E1:K211E and E2:V264A) in structural proteins of Chikungunya virus enhance fitness in Aedes aegypti.

    abstract::Expansion of CHIKV outbreaks with appearance of novel mutations are reported from many parts of the world. Two novel mutations viz. E1:K211E and E2:V264A in background of E1:226A are recently identified from Aedes aegypti dominated areas of India. In this study, the role of these mutations in modulation of infectivity...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/j.virol.2016.06.025

    authors: Agarwal A,Sharma AK,Sukumaran D,Parida M,Dash PK

    更新日期:2016-10-01 00:00:00

  • Early and late functions of alfalfa mosaic virus coat protein can be mutated separately.

    abstract::To investigate the role of alfalfa mosaic virus coat protein (CP) in genome activation, asymmetric plus-strand RNA accumulation, and cell-to-cell spread of the virus, mutations were made in the CP gene and putative CP binding sites in the 3'-untranslated region (UTR) of RNA 3. Mutants that produced no CP-related pepti...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1006/viro.1994.1411

    authors: van der Vossen EA,Neeleman L,Bol JF

    更新日期:1994-08-01 00:00:00

  • cDNAs of beet necrotic yellow vein virus RNAs 3 and 4 are rendered biologically active in a plasmid containing the cauliflower mosaic virus 35S promoter.

    abstract::cDNAs of beet necrotic yellow vein virus RNAs 3 and 4 could be rendered biologically active when they were placed under the control of the cauliflower mosaic virus 35S promoter and polyadenylation signal. Although the 35S in vivo transcripts should have contained up to forty 5' and several hundred 3' nonviral nucleoti...

    journal_title:Virology

    pub_type: 杂志文章

    doi:10.1016/0042-6822(91)90806-m

    authors: Commandeur U,Jarausch W,Li Y,Koenig R,Burgermeister W

    更新日期:1991-11-01 00:00:00