Mechanisms of stabilization of integrative and conjugative elements.

Abstract:

:Integrative and conjugative elements (ICEs) are nearly ubiquitous in microbial genomes and influence their evolution by providing adaptive functions to their host and by enhancing genome plasticity and diversification. For a long-time, it has been assumed that by integrating into the chromosome of their host, these self-transmissible elements were passively inherited in subsequent generations. Recent findings point to a much more complex story that includes multiple strategies used by ICEs to leverage maintenance in cell populations such as transient replication, active partition of the excised circular intermediate or disassembly into multiple parts scattered in the chromosome. Here I review these diverse mechanisms of stabilization in the general context of ICEs belonging to diverse families.

journal_name

Curr Opin Microbiol

authors

Burrus V

doi

10.1016/j.mib.2017.03.014

subject

Has Abstract

pub_date

2017-08-01 00:00:00

pages

44-50

eissn

1369-5274

issn

1879-0364

pii

S1369-5274(17)30007-3

journal_volume

38

pub_type

杂志文章,评审
  • Global relative and absolute quantitation in microbial proteomics.

    abstract::Proteomic studies are designed to yield either qualitative information on proteins (identification, distribution, posttranslational modifications, interactions, structure and function) or quantitative information (abundance, distribution within different localizations, temporal changes in abundance due to synthesis an...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2012.02.005

    authors: Otto A,Bernhardt J,Hecker M,Becher D

    更新日期:2012-06-01 00:00:00

  • Inhibition of host cell signal transduction by Leishmania: observations relevant to the selective impairment of IL-12 responses.

    abstract::Leishmania parasites are able to delay the onset of cell-mediated immunity by selectively impairing the ability of infected macrophages to produce interleukin (IL)-12. Leishmania infection arrests the JAK/STAT-mediated signal transduction involved in activation of the IL-12 p40 promoter; the phosphorylation defects ma...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/S1369-5274(99)80077-0

    authors: McDowell MA,Sacks DL

    更新日期:1999-08-01 00:00:00

  • Nutritional control via Tor signaling in Saccharomyces cerevisiae.

    abstract::The yeast Saccharomyces cerevisiae senses and responds to nutrients by adapting its growth rate and undergoing morphogenic transitions to ensure survival. The Tor pathway is a major integrator of nutrient-derived signals that in coordination with other signaling pathways orchestrates cell growth. Recent advances have ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2008.02.013

    authors: Rohde JR,Bastidas R,Puria R,Cardenas ME

    更新日期:2008-04-01 00:00:00

  • Bacterial replication in the host cell cytosol.

    abstract::Intracellular bacteria in mammalian host cells can either live in a membrane-bound vacuole modified to support bacterial growth, or escape from the primary phagosome into the host cell cytoplasm. Phagosomal escape is best studied in Listeria monocytogenes in which a pore-forming cytolysin and two phospholipases are in...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(99)00050-8

    authors: Goebel W,Kuhn M

    更新日期:2000-02-01 00:00:00

  • Oligosaccharides from land plants and algae: production and applications in therapeutics and biotechnology.

    abstract::Since the past decades, oligosaccharides are considered for their potential biological activities. To exploit them, it was essential to obtain pure molecules in large amounts. Several strategies were developed to produce specific sugar sequences with specific substitution patterns from land plants and algae polysaccha...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2009.04.007

    authors: Courtois J

    更新日期:2009-06-01 00:00:00

  • Modulation of natural killer cell activity by viruses.

    abstract::Since their discovery, our understanding of NK cells has evolved from branding them marginal innate immunity cells to key players in anti-viral and anti-tumor immunity. Importance of NK cells in control of various viral infections is perhaps best illustrated by the existence of plethora of viral mechanisms aimed to mo...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2010.05.011

    authors: Lisnić VJ,Krmpotić A,Jonjić S

    更新日期:2010-08-01 00:00:00

  • Antibacterials - mechanisms of action.

    abstract::Recent studies on antibacterials have focused on the development of antimycobacterial agents and antibacterial peptides, and on furthering the understanding of agents that have been available for several decades, including imidazoles, beta-lactams and quinolones. New areas of research include antisense oligonucleotide...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(98)80081-7

    authors: Piddock LJ

    更新日期:1998-10-01 00:00:00

  • Taking the pseudo out of pseudogenes.

    abstract::Pseudogenes are defined as fragments of once-functional genes that have been silenced by one or more nonsense, frameshift or missense mutations. Despite continuing increases in the speed of sequencing and annotating bacterial genomes, the identification and categorisation of pseudogenes remains problematic. Even when ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2014.11.012

    authors: Goodhead I,Darby AC

    更新日期:2015-02-01 00:00:00

  • The role of Dectin-1 in the host defence against fungal infections.

    abstract::Dectin-1 is an innate immune pattern recognition receptor (PRR) that, through its ability to bind β-glucans, is involved in the recognition of several pathogenic fungi. Dectin-1 can stimulate a variety of cellular responses via the Syk/CARD9 signalling pathway, including phagocytosis, cytokine production and the respi...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2011.07.001

    authors: Drummond RA,Brown GD

    更新日期:2011-08-01 00:00:00

  • Group B Streptococcus surface proteins as major determinants for meningeal tropism.

    abstract::Streptococcus agalactiae (group B Streptococcus, GBS), a normal constituent of the intestinal microbiota is the major cause of human neonatal infections and a worldwide spread 'hypervirulent' clone, GBS ST-17, is strongly associated with neonatal meningitis. Adhesion to epithelial and endothelial cells constitutes a k...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2011.12.002

    authors: Tazi A,Bellais S,Tardieux I,Dramsi S,Trieu-Cuot P,Poyart C

    更新日期:2012-02-01 00:00:00

  • Microbial genomes: dealing with diversity.

    abstract::We have now complete genome sequences of several pairs of closely related prokaryotes (conspecific strains or congeneric species). Surprisingly, even strains of the same species can differ by as much as 20% in gene content. Conceptual and methodological approaches for dealing with such diversity are now being develope...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(00)00204-6

    authors: Boucher Y,Nesbø CL,Doolittle WF

    更新日期:2001-06-01 00:00:00

  • Mycobacterium tuberculosis in the post-genomic age.

    abstract::Since the publication of the complete genome sequence of Mycobacterium tuberculosis in 1998, there has been a marked intensification and diversification of activities in the field of tuberculosis research. Among the areas that have advanced spectacularly are comparative genomics, functional genomics-notably the study ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(00)00160-0

    authors: Domenech P,Barry CE 3rd,Cole ST

    更新日期:2001-02-01 00:00:00

  • How bacteria talk to each other: regulation of gene expression by quorum sensing.

    abstract::Quorum sensing, or the control of gene expression in response to cell density, is used by both gram-negative and gram-positive bacteria to regulate a variety of physiological functions. In all cases, quorum sensing involves the production and detection of extracellular signalling molecules called autoinducers. While u...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(99)00025-9

    authors: Bassler BL

    更新日期:1999-12-01 00:00:00

  • Control of bacterial transcription, translation and replication by (p)ppGpp.

    abstract::The small nucleotides pppGpp and ppGpp (or (p)ppGpp) are rapidly synthesized in response to nutritional stress. In Escherichia coli, the enzymes RelA and SpoT are triggered by different starvation signals to produce (p)ppGpp. In many Gram-positive bacteria this is carried out by RelA and two small homologs. (p)ppGpp, ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2008.02.001

    authors: Srivatsan A,Wang JD

    更新日期:2008-04-01 00:00:00

  • Genomics of clostridial pathogens: implication of extrachromosomal elements in pathogenicity.

    abstract::The recently decoded genomes of the major clostridial toxin-producing pathogens Clostridium perfringens, Clostridium tetani, Clostridium botulinum and Clostridium difficile have provided a huge amount of new sequence data. Recent studies have focused on the identification and investigation of pathogenic determinants a...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2005.08.006

    authors: Brüggemann H

    更新日期:2005-10-01 00:00:00

  • Giants among larges: how gigantism impacts giant virus entry into amoebae.

    abstract::The proposed order Megavirales comprises the nucleocytoplasmic large DNA viruses (NCLDV), infecting a wide range of hosts. Over time, they co-evolved with different host cells, developing various strategies to penetrate them. Mimiviruses and other giant viruses enter cells through phagocytosis, while Marseillevirus an...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2016.03.009

    authors: Rodrigues RAL,Abrahão JS,Drumond BP,Kroon EG

    更新日期:2016-06-01 00:00:00

  • Biochemistry of type IV secretion.

    abstract::In the past year, our knowledge of type IV transporters of Gram-negative bacteria has further expanded. Advances include the discovery of additional members of this family of proteins, increased knowledge of the morphologies of type IV transporters, and a better understanding of the mechanisms by which macromolecules ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(99)80004-6

    authors: Burns DL

    更新日期:1999-02-01 00:00:00

  • Emerging views on integrin signaling via Rac1 during invasin-promoted bacterial uptake.

    abstract::Enteropathogenic Yersinia species encode invasin, which promotes uptake into host cells by binding beta1 integrins. Invasin may cluster integrin heterodimers extracellularly and cause the integrin alpha and beta chains to splay apart in the cytoplasm. Cdc42 signaling is not essential for Yersinia uptake, whereas invas...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2004.12.009

    authors: Wong KW,Isberg RR

    更新日期:2005-02-01 00:00:00

  • Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction.

    abstract::The concept of 'protein function' is rather 'fuzzy' because it is often based on whimsical terms or contradictory nomenclature. This currently presents a challenge for functional genomics because precise definitions are essential for most computational approaches. Addressing this challenge, the notion of networks betw...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2004.08.012

    authors: Jansen R,Gerstein M

    更新日期:2004-10-01 00:00:00

  • Bioprospecting in the developing world.

    abstract::During the past ten years, species-rich nations in the developing world have sought to capitalize on their 'biological patrimony' through a variety of business relationships with multinational corporations as a means of underwriting their conservation efforts. Initially lauded, these relationships have generated more ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/S1369-5274(99)80041-1

    authors: Garrity GM,Hunter-Cevera J

    更新日期:1999-06-01 00:00:00

  • Non-coding RNA and the complex regulation of the trypanosome life cycle.

    abstract::The protozoan parasite Trypanosoma brucei is the causative agent of African sleeping sickness and the wasting disease, nagana, in cattle. The parasite is transmitted to the mammalian host by the bite of a tsetse fly. These parasites lack transcriptional regulation, and their gene expression is mainly regulated post-tr...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2014.06.006

    authors: Michaeli S

    更新日期:2014-08-01 00:00:00

  • The impact of metal sequestration on Staphylococcus aureus metabolism.

    abstract::The Gram-positive pathogen Staphylococcus aureus poses a serious risk to public health due to its prevalence as a commensal organism, its ability to cause a multitude of diseases, and the increasing incidence of antibiotic resistant strains. S. aureus infects diverse niches within vertebrates despite being challenged ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2011.11.004

    authors: Hammer ND,Skaar EP

    更新日期:2012-02-01 00:00:00

  • Toxins from anaerobic bacteria: specificity and molecular mechanisms of action.

    abstract::Major advances have been made in the past five years in the identification of cellular targets of toxins produced by anaerobic bacteria. These targets include the vesicular membrane docking and fusion apparatus, the actin cytoskeleton, the signal transduction machinery and the cell membrane. The recent discovery that ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(98)80144-6

    authors: Boquet P,Munro P,Fiorentini C,Just I

    更新日期:1998-02-01 00:00:00

  • Genome mining and prospects for antibiotic discovery.

    abstract::Natural products are a rich source of bioactive compounds that have been used successfully in the areas of human health from infectious disease to cancer; however, traditional fermentation-based screening has provided diminishing returns over the last 20-30 years. Solutions to the unmet need of resistant bacterial inf...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2019.01.001

    authors: Foulston L

    更新日期:2019-10-01 00:00:00

  • Genome archeology leading to the characterization and classification of transport proteins.

    abstract::In the study of transmembrane transport, molecular phylogeny provides a reliable guide to protein structure, catalytic and noncatalytic transport mechanisms, mode of energy coupling and substrate specificity. It also allows prediction of the evolutionary history of a transporter family, leading to estimations of its a...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章

    doi:10.1016/s1369-5274(99)00016-8

    authors: Saier MH

    更新日期:1999-10-01 00:00:00

  • From motility to virulence: Sensing and responding to environmental signals in Vibrio cholerae.

    abstract::Sensing its changing environment is key for Vibrio cholerae when making the transition from an aquatic lifestyle to one more suited to a human host. An inverse correlation between motility and virulence gene expression has been reported, with the NADH : ubiquinone oxidoreductase system which powers motility by generat...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/s1369-5274(03)00032-8

    authors: Krukonis ES,DiRita VJ

    更新日期:2003-04-01 00:00:00

  • Virome genomics: a tool for defining the human virome.

    abstract::High throughput, deep sequencing assays are powerful tools for gaining insights into virus-host interactions. Sequencing assays can discover novel viruses and describe the genomes of novel and known viruses. Genomic information can predict viral proteins that can be characterized, describe important genes in the host ...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2013.04.006

    authors: Wylie KM,Weinstock GM,Storch GA

    更新日期:2013-08-01 00:00:00

  • Targeting the viral Achilles' heel: recognition of 5'-triphosphate RNA in innate anti-viral defence.

    abstract::Some RNA virus genomes bear 5'-triphosphates, which can be recognized in the cytoplasm of infected cells by host proteins that mediate anti-viral immunity. Both the innate sensor RIG-I and the interferon-induced IFIT proteins bind to 5'-triphosphate viral RNAs. RIG-I signals for induction of interferons during RNA vir...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2013.04.009

    authors: Rehwinkel J,Reis e Sousa C

    更新日期:2013-08-01 00:00:00

  • The mycobiota: fungi take their place between plants and bacteria.

    abstract::Eukaryotes host numerous intracellular and associated microbes in their microbiota. Fungi, the so-called Mycobiota, are important members of both human and plant microbiota. Moreover, members of the plant mycobiota host their own microbiota on their surfaces and inside their hyphae. The microbiota of the mycobiota inc...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2019.08.004

    authors: Bonfante P,Venice F,Lanfranco L

    更新日期:2019-06-01 00:00:00

  • Single-cell reporters for pathogen responses to antimicrobial host attacks.

    abstract::Host-pathogen interactions are often heterogeneous involving individual encounters between host and pathogen cells with diverse molecular mechanisms, response networks, and diverging outcomes. Single-cell reporters can identify the various types of interactions and participating pathogen subsets, help to unravel under...

    journal_title:Current opinion in microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.mib.2020.07.013

    authors: Roche B,Bumann D

    更新日期:2021-02-01 00:00:00