McmA-dependent and -independent regulatory systems governing expression of ClrB-regulated cellulase and hemicellulase genes in Aspergillus nidulans.

Abstract:

:Fungal cellulolytic and hemicellulolytic enzymes are promising tools for industrial hydrolysis of cellulosic biomass; however, the regulatory network underlying their production is not well understood. The recent discovery of the transcriptional activators ClrB and McmA in Aspergillus nidulans implied a novel regulatory mechanism driven by their interaction, experimental evidence for which was obtained from transcriptional and DNA-binding analyses in this study. It was found that ClrB was essential for induced expression of all the genes examined in this study, while McmA dependency of their expression was gene-dependent. DNA-binding studies revealed McmA assisted in the recruitment of ClrB to the cellulose-responsive element (CeRE) in the promoters of eglA and eglB, expression of which was significantly reduced in the mcmA mutant. The CCG triplet within the CeRE served as the recognition sequence for the ClrB monomer. In contrast, ClrB did not require McmA for binding as a homodimer to the CGGN8 CCG sequences in the promoter of mndB, expression of which was affected less in the mcmA mutant than in all other examined genes. Thus, there are two types of ClrB-mediated regulation: McmA-assisted and McmA-independent. This novel McmA-ClrB synergistic system provides new insights into the complex regulatory network involved in cellulase and hemicellulase production.

journal_name

Mol Microbiol

journal_title

Molecular microbiology

authors

Li N,Kunitake E,Aoyama M,Ogawa M,Kanamaru K,Kimura M,Koyama Y,Kobayashi T

doi

10.1111/mmi.13493

subject

Has Abstract

pub_date

2016-12-01 00:00:00

pages

810-826

issue

5

eissn

0950-382X

issn

1365-2958

journal_volume

102

pub_type

杂志文章
  • The chromosomal relBE2 toxin-antitoxin locus of Streptococcus pneumoniae: characterization and use of a bioluminescence resonance energy transfer assay to detect toxin-antitoxin interaction.

    abstract::Proteic toxin-antitoxin (TA) loci were first identified in bacterial plasmids, and they were regarded as involved in stable plasmid maintenance by a so-called 'addiction' mechanism. Later, chromosomally encoded TA loci were identified and their function ascribed to survival mechanisms when bacteria were subjected to s...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2006.05027.x

    authors: Nieto C,Pellicer T,Balsa D,Christensen SK,Gerdes K,Espinosa M

    更新日期:2006-02-01 00:00:00

  • Burkholderia mallei expresses a unique lipopolysaccharide mixture that is a potent activator of human Toll-like receptor 4 complexes.

    abstract::Burkholderia mallei, the aetiologic agent of glanders, causes a variety of illnesses in animals and humans ranging from occult infections to acute fulminating septicaemias. To better understand the role of lipopolysaccharide (LPS) in the pathogenesis of these diseases, studies were initiated to characterize the struct...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2006.05519.x

    authors: Brett PJ,Burtnick MN,Snyder DS,Shannon JG,Azadi P,Gherardini FC

    更新日期:2007-01-01 00:00:00

  • Type IV pili-mediated secretion modulates Francisella virulence.

    abstract::Francisella tularensis are the causative agent of the zoonotic disease, tularaemia. Among four F. tularensis subspecies, ssp. novicida (F. novicida) is pathogenic only for immunocompromised individuals, while all four subspecies are pathogenic for mice. This study utilized proteomic and bioinformatic approaches to ide...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2006.05365.x

    authors: Hager AJ,Bolton DL,Pelletier MR,Brittnacher MJ,Gallagher LA,Kaul R,Skerrett SJ,Miller SI,Guina T

    更新日期:2006-10-01 00:00:00

  • The holin of bacteriophage lambda forms rings with large diameter.

    abstract::Holins control the length of the infection cycle of tailed phages (the Caudovirales) by oligomerizing to form lethal holes in the cytoplasmic membrane at a time dictated by their primary structure. Nothing is currently known about the physical basis of their oligomerization or the structure of the oligomers formed by ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06298.x

    authors: Savva CG,Dewey JS,Deaton J,White RL,Struck DK,Holzenburg A,Young R

    更新日期:2008-08-01 00:00:00

  • Regulation of glutamate dehydrogenase expression in Pseudomonas putida results from its direct repression by NtrC under nitrogen-limiting conditions.

    abstract::Nitrogen-regulated genes in enterobacteria are positively controlled by the transcriptional activator of σ(N) -dependent promoters NtrC, either directly or indirectly, through the dual regulator Nac. Similar to enterobacteria, gdhA encoding glutamate dehydrogenase from Pseudomonas putida is one of the few genes that i...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07329.x

    authors: Hervás AB,Canosa I,Santero E

    更新日期:2010-10-01 00:00:00

  • Rearrangements in the staphylococcal beta-lactamase-encoding plasmid, pIP1066, including a DNA inversion that generates two alternative transposons.

    abstract::The plasmid plP1066, harboured by by a methicillin-resistant Staphylococcus aureus strain isolated in France, carries genes specifying beta-lactamase. This plasmid undergoes numerous rearrangements. One of these was insertion, between the genes binR and sin encoding resolvases, of a 16 kb element which displayed the c...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1995.mmi_17040769.x

    authors: Derbise A,Dyke KG,el Solh N

    更新日期:1995-08-01 00:00:00

  • Putting a break on protein translocation: metabolic regulation of mitochondrial protein import.

    abstract::Sequence-inherent targeting information directs polypeptides synthesized in the cytosol to their respective cellular compartment. Some proteins use ambiguous sorting signals or specific folding properties to be dually distributed between the cytosol and mitochondria. A study published in this issue of Molecular Microb...

    journal_title:Molecular microbiology

    pub_type: 评论,杂志文章

    doi:10.1111/j.1365-2958.2009.06660.x

    authors: Herrmann JM

    更新日期:2009-04-01 00:00:00

  • Salmonella acquires ferrous iron from haemophagocytic macrophages.

    abstract::Bacteria harbour both ferrous and ferric iron transporters. We now report that infection of macrophages and mice with a Salmonella enterica Typhimurium strain containing an inactivated feoB-encoded ferrous iron transporter results in increased bacterial replication, compared to infection with wild type. Inactivation o...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12739

    authors: Nagy TA,Moreland SM,Detweiler CS

    更新日期:2014-09-01 00:00:00

  • RloC: a wobble nucleotide-excising and zinc-responsive bacterial tRNase.

    abstract:SUMMARY:The conserved bacterial protein RloC, a distant homologue of the tRNA(Lys) anticodon nuclease (ACNase) PrrC, is shown here to act as a wobble nucleotide-excising and Zn(++)-responsive tRNase. The more familiar PrrC is silenced by a genetically linked type I DNA restriction-modification (R-M) enzyme, activated b...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06387.x

    authors: Davidov E,Kaufmann G

    更新日期:2008-09-01 00:00:00

  • The group A streptococcal dipeptide permease (Dpp) is involved in the uptake of essential amino acids and affects the expression of cysteine protease.

    abstract::The majority of characterized bacterial dipeptide permeases (Dpp) are membrane-associated complexes of five proteins belonging to the ABC-transporter family. They have been found to be involved in the uptake of essential amino acids, haem production, chemotaxis and sporulation. A 5.8 kb genomic DNA fragment of the ser...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.00898.x

    authors: Podbielski A,Leonard BA

    更新日期:1998-06-01 00:00:00

  • Defects in N-glycosylation induce apoptosis in yeast.

    abstract::N-glycosylation in the endoplasmic reticulum is an essential protein modification and highly conserved in evolution from yeast to man. Defects of N-glycosylation in humans lead to congenital disorders. The pivotal step of this pathway is the transfer of the evolutionarily conserved lipid-linked core-oligosaccharide to...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2005.04981.x

    authors: Hauptmann P,Riel C,Kunz-Schughart LA,Fröhlich KU,Madeo F,Lehle L

    更新日期:2006-02-01 00:00:00

  • The Brucella abortus virulence regulator, LovhK, is a sensor kinase in the general stress response signalling pathway.

    abstract::In the intracellular pathogen Brucella abortus, the general stress response (GSR) signalling system determines survival under acute stress conditions in vitro, and is required for long-term residence in a mammalian host. To date, the identity of the Brucella sensor kinase(s) that function to perceive stress and direct...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12809

    authors: Kim HS,Willett JW,Jain-Gupta N,Fiebig A,Crosson S

    更新日期:2014-11-01 00:00:00

  • Functional interplay between the Bacillus subtilis DnaD and DnaB proteins essential for initiation and re-initiation of DNA replication.

    abstract::Initiation and re-initiation of chromosomal DNA replication in bacteria rely on divergent multiprotein assemblies, which direct the functional delivery of the replicative helicase on single-stranded DNA (ssDNA) at specific sites. These two processes are triggered either at the single chromosomal origin oriC or at arre...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04451.x

    authors: Bruand C,Velten M,McGovern S,Marsin S,Sérèna C,Ehrlich SD,Polard P

    更新日期:2005-02-01 00:00:00

  • YscP, a Yersinia protein required for Yop secretion that is surface exposed, and released in low Ca2+.

    abstract::The Yersinia Ysc apparatus is made of more than 20 proteins, 11 of which have homologues in many type III systems. Here, we characterize YscP from Yersinia enterocolitica. This 515-residue protein has a high proline content, a large tandem repetition and a slow migration in SDS-PAGE. Unlike the products of neighbourin...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2000.02026.x

    authors: Stainier I,Bleves S,Josenhans C,Karmani L,Kerbourch C,Lambermont I,Tötemeyer S,Boyd A,Cornelis GR

    更新日期:2000-09-01 00:00:00

  • Phase variants of Bordetella bronchiseptica arise by spontaneous deletions in the vir locus.

    abstract::Bordetella bronchiseptica is a common respiratory tract pathogen of many mammalian species. Nucleotide sequences from the locus involved in coordinate regulation of B. pertussis virulence factors, vir, were shown to have a high degree of homology to chromosomal DNA from virulent (Vir+) and avirulent (Vir-) strains of ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1989.tb00157.x

    authors: Monack DM,Arico B,Rappuoli R,Falkow S

    更新日期:1989-12-01 00:00:00

  • tRNAPro -mediated downregulation of elongation factor P is required for mgtCBR expression during Salmonella infection.

    abstract::Bacterial ribosome requires elongation factor P to translate fragments harbouring consecutive proline codons. Given the abundance of ORFs with potential EF-P regulated sites, EF-P was assumed to be constitutively expressed. Here, we report that the intracellular pathogen Salmonella enterica serovar Typhimurium decreas...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13454

    authors: Nam D,Choi E,Shin D,Lee EJ

    更新日期:2016-10-01 00:00:00

  • Function of bacteriophage G7C esterase tailspike in host cell adsorption.

    abstract::Bacteriophages recognize and bind to their hosts with the help of receptor-binding proteins (RBPs) that emanate from the phage particle in the form of fibers or tailspikes. RBPs show a great variability in their shapes, sizes, and location on the particle. Some RBPs are known to depolymerize surface polysaccharides of...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13710

    authors: Prokhorov NS,Riccio C,Zdorovenko EL,Shneider MM,Browning C,Knirel YA,Leiman PG,Letarov AV

    更新日期:2017-08-01 00:00:00

  • Activated chemoreceptor arrays remain intact and hexagonally packed.

    abstract::Bacterial chemoreceptors cluster into exquisitively sensitive, tunable, highly ordered, polar arrays. While these arrays serve as paradigms of cell signalling in general, it remains unclear what conformational changes transduce signals from the periplasmic tips, where attractants and repellents bind, to the cytoplasmi...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2011.07854.x

    authors: Briegel A,Beeby M,Thanbichler M,Jensen GJ

    更新日期:2011-11-01 00:00:00

  • Structural and transcriptional analysis of the pyrABCN, pyrD and pyrF genes in Aspergillus nidulans and the evolutionary origin of fungal dihydroorotases.

    abstract::The six biochemical steps of the de novo pyrimidine biosynthesis pathway are conserved in all known organisms. However, in animals and fungi, unlike prokaryotes, at least the first two activities are grouped on a multifunctional enzyme. Here, we report cloning, mapping and transcriptional characterization of some pyri...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01507.x

    authors: Aleksenko A,Liu W,Gojkovic Z,Nielsen J,Piskur J

    更新日期:1999-08-01 00:00:00

  • Tn10/IS10 transposition is downregulated at the level of transposase expression by the RNA-binding protein Hfq.

    abstract::We show in this work that disruption of the hfq gene in Escherichia coli causes a large increase in IS10 transposition when IS10 is present on a multi-copy plasmid. Hfq is an RNA-binding protein that regulates the expression of a large number of genes at the post-transcriptional level by promoting the pairing of mRNAs...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2010.07359.x

    authors: Ross JA,Wardle SJ,Haniford DB

    更新日期:2010-11-01 00:00:00

  • Pseudomonas aeruginosa defense systems against microbicidal oxidants.

    abstract::The most abundant oxidants controlling bacterial colonization on mucosal barrier epithelia are hypochlorous acid (HOCl), hypobromous acid (HOBr) and hypothiocyanous acid (HOSCN). All three oxidants are highly antimicrobial but little is known about their relative efficacies, their respective cellular targets, or what ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13768

    authors: Groitl B,Dahl JU,Schroeder JW,Jakob U

    更新日期:2017-11-01 00:00:00

  • Human Menkes X-chromosome disease and the staphylococcal cadmium-resistance ATPase: a remarkable similarity in protein sequences.

    abstract::A search with the proposed amino acid translation product from the new 'candidate gene' for human Menkes disease against protein sequence libraries showed a remarkable similarity to that for the cadmium efflux ATPase from Staphylococcus aureus resistance plasmids. The Menkes sequence appears closer to the CadA Cd2+ se...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-2958.1993.tb00898.x

    authors: Silver S,Nucifora G,Phung LT

    更新日期:1993-10-01 00:00:00

  • Control of translation by mRNA secondary structure: the importance of the kinetics of structure formation.

    abstract::RNA secondary structure is important in a wide variety of biological processes, but relatively little is known about the pathways and kinetics of RNA folding. When the IS10 transposase (tnp) gene is transcribed from a promoter outside the element, little increase in tnp expression is observed. This protection from out...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb01337.x

    authors: Ma CK,Kolesnikow T,Rayner JC,Simons EL,Yim H,Simons RW

    更新日期:1994-12-01 00:00:00

  • The Bacillus SpoIIGA protein is targeted to sites of spore septum formation in a SpoIIE-independent manner.

    abstract::The process of bacterial cell division involves the assembly of a complex of proteins at the site of septation that probably provides both the structural and the cytokinetic functions required for elaboration and closure of the septal annulus. During sporulation in Bacillus subtilis, this complex of proteins is modifi...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1998.00849.x

    authors: Fawcett P,Melnikov A,Youngman P

    更新日期:1998-06-01 00:00:00

  • DNA and origin region segregation are not affected by the transition from rod to sphere after inhibition of Escherichia coli MreB by A22.

    abstract::The bacterial actin homologue MreB forms a helix underneath the cytoplasmic membrane and was shown to be essential in the morphogenesis of the rod-shaped cells. Additionally, MreB was implicated to be involved in DNA segregation. However, in our hands the mreBCD deletion strain (PA340-678) grew without apparent DNA se...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2007.05777.x

    authors: Karczmarek A,Martínez-Arteaga R,Alexeeva S,Hansen FG,Vicente M,Nanninga N,den Blaauwen T

    更新日期:2007-07-01 00:00:00

  • Bacterial conjugative transfer: visualization of successful mating pairs and plasmid establishment in live Escherichia coli.

    abstract::We used the LacO/GFP-LacI system to label and visualize the IncP beta plasmid R751 fluorescently during conjugative transfer between live donor and recipient bacteria. Comparisons of R751 in conjugative and non-conjugative conditions have allowed us to identify key localizations and movements associated with the initi...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.02938.x

    authors: Lawley TD,Gordon GS,Wright A,Taylor DE

    更新日期:2002-05-01 00:00:00

  • CooB is required for assembly but not transport of CS1 pilin.

    abstract::CS1 pili are filamentous proteinaceous appendages found on many enterotoxigenic Escherichia coli (ETEC) strains isolated from human diarrhoeal disease. They are thought to effect colonization of the upper intestine by facilitating binding to human ileal epithelial cells. We have identified a gene, cooB, which lies dir...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1992.tb01471.x

    authors: Scott JR,Wakefield JC,Russell PW,Orndorff PE,Froehlich BJ

    更新日期:1992-02-01 00:00:00

  • Methylthioadenosine/S-adenosylhomocysteine nucleosidase, a critical enzyme for bacterial metabolism.

    abstract::The importance of methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase in bacteria has started to be appreciated only in the past decade. A comprehensive analysis of its various roles here demonstrates that it is an integral component of the activated methyl cycle, which recycles adenine and methionine th...

    journal_title:Molecular microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/j.1365-2958.2010.07455.x

    authors: Parveen N,Cornell KA

    更新日期:2011-01-01 00:00:00

  • Location of a lepidopteran specificity region in insecticidal crystal protein CryIIA from Bacillus thuringiensis.

    abstract::The Bacillus thuringiensis insecticidal crystal protein CryIIA has both high mosquito activity and gypsy moth activity; in contrast CryIIB, which is 87% homologous, displays no mosquito activity and has a three-fold lower gypsy moth activity. The regions responsible for specificity against gypsy moth (Lymantria dispar...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb00451.x

    authors: Liang Y,Dean DH

    更新日期:1994-08-01 00:00:00

  • Characterization of a novel Neisseria meningitidis Fur and iron-regulated operon required for protection from oxidative stress: utility of DNA microarray in the assignment of the biological role of hypothetical genes.

    abstract::We have previously shown that in the human pathogen Neisseria meningitidis group B (MenB) more than 200 genes are regulated in response to growth with iron. Among the Fur-dependent, upregulated genes identified by microarray analysis was a putative operon constituted by three genes, annotated as NMB1436, NMB1437 and N...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04315.x

    authors: Grifantini R,Frigimelica E,Delany I,Bartolini E,Giovinazzi S,Balloni S,Agarwal S,Galli G,Genco C,Grandi G

    更新日期:2004-11-01 00:00:00