NFP: An R Package for Characterizing and Comparing of Annotated Biological Networks.

Abstract:

:Large amounts of various biological networks exist for representing different types of interaction data, such as genetic, metabolic, gene regulatory, and protein-protein relationships. Recent approaches on biological network study are based on different mathematical concepts. It is necessary to construct a uniform framework to judge the functionality of biological networks. We recently introduced a knowledge-based computational framework that reliably characterized biological networks in system level. The method worked by making systematic comparisons to a set of well-studied "basic networks," measuring both the functional and topological similarities. A biological network could be characterized as a spectrum-like vector consisting of similarities to basic networks. Here, to facilitate the application, development, and adoption of this framework, we present an R package called NFP. This package extends our previous pipeline, offering a powerful set of functions for Network Fingerprint analysis. The software shows great potential in biological network study. The open source NFP R package is freely available under the GNU General Public License v2.0 at CRAN along with the vignette.

journal_name

Biomed Res Int

authors

Cao Y,Xu W,Niu C,Bo X,Li F

doi

10.1155/2017/7457131

subject

Has Abstract

pub_date

2017-01-01 00:00:00

pages

7457131

eissn

2314-6133

issn

2314-6141

journal_volume

2017

pub_type

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