Calibration and analysis of a multimodal micro-CT and structured light imaging system for the evaluation of excised breast tissue.

Abstract:

:A multimodal micro-computed tomography (CT) and multi-spectral structured light imaging (SLI) system is introduced and systematically analyzed to test its feasibility to aid in margin delineation during breast conserving surgery (BCS). Phantom analysis of the micro-CT yielded a signal-to-noise ratio of 34, a contrast of 1.64, and a minimum detectable resolution of 240 μm for a 1.2 min scan. The SLI system, spanning wavelengths 490 nm to 800 nm and spatial frequencies up to 1.37 [Formula: see text], was evaluated with aqueous tissue simulating phantoms having variations in particle size distribution, scatter density, and blood volume fraction. The reduced scattering coefficient, [Formula: see text] and phase function parameter, γ, were accurately recovered over all wavelengths independent of blood volume fractions from 0% to 4%, assuming a flat sample geometry perpendicular to the imaging plane. The resolution of the optical system was tested with a step phantom, from which the modulation transfer function was calculated yielding a maximum resolution of 3.78 cycles per mm. The three dimensional spatial co-registration between the CT and optical imaging space was tested and shown to be accurate within 0.7 mm. A freshly resected breast specimen, with lobular carcinoma, fibrocystic disease, and adipose, was imaged with the system. The micro-CT provided visualization of the tumor mass and its spiculations, and SLI yielded superficial quantification of light scattering parameters for the malignant and benign tissue types. These results appear to be the first demonstration of SLI combined with standard medical tomography for imaging excised tumor specimens. While further investigations are needed to determine and test the spectral, spatial, and CT features required to classify tissue, this study demonstrates the ability of multimodal CT/SLI to quantify, visualize, and spatially navigate breast tumor specimens, which could potentially aid in the assessment of tumor margin status during BCS.

journal_name

Phys Med Biol

authors

McClatchy DM,Rizzo EJ,Meganck J,Kempner J,Vicory J,Wells WA,Paulsen KD,Pogue BW

doi

10.1088/1361-6560/aa94b6

subject

Has Abstract

pub_date

2017-11-10 00:00:00

pages

8983-9000

issue

23

eissn

0031-9155

issn

1361-6560

journal_volume

62

pub_type

杂志文章
  • Improved precision of syndesmophyte measurement for the evaluation of ankylosing spondylitis using CT: a phantom and patient study.

    abstract::Ankylosing spondylitis is a disease characterized by abnormal bone formation (syndesmophyte) at the margins of inter-vertebral disc spaces. Syndesmophyte growth is currently typically monitored by the visual inspection of radiographs. The limitations inherent to the modality (2D projection of a 3D object) and rater (q...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/57/14/4683

    authors: Tan S,Yao J,Yao L,Ward MM

    更新日期:2012-07-21 00:00:00

  • Estimation of the absorption coefficients of two-layered media by a simple method using spatially and time-resolved reflectances.

    abstract::Our newly developed method using spatially and time-resolved reflectances can easily estimate the absorption coefficients of each layer in a two-layered medium if the thickness of the upper layer and the reduced scattering coefficients of the two layers are known a priori. We experimentally validated this method using...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/54/16/014

    authors: Shimada M,Sato C,Hoshi Y,Yamada Y

    更新日期:2009-08-21 00:00:00

  • An analysis of the accuracy of magnetic resonance flip angle measurement methods.

    abstract::Several methods of flip angle mapping for magnetic resonance imaging have been proposed. We evaluated the accuracy of five methods of flip angle measurement in the presence of measurement noise. Our analysis was performed in a closed form by propagation of probability density functions (PDFs). The flip angle mapping m...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/55/20/008

    authors: Morrell GR,Schabel MC

    更新日期:2010-10-21 00:00:00

  • Transport-based quantitative photoacoustic tomography: simulations and experiments.

    abstract::In this paper we describe a method for quantitative photoacoustic tomography (qPAT) based on the photon radiative transfer equation (RTE) coupled with the Helmholtz photoacoustic wave equation. Considerable simulations and tissue-like phantom experiments are conducted to evaluate transport-based qPAT in comparison wit...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/55/7/009

    authors: Yao L,Sun Y,Jiang H

    更新日期:2010-04-07 00:00:00

  • Fully three-dimensional positron emission tomography.

    abstract::Fully three-dimensional positron emission tomography is considered and a reconstruction algorithm derived. The reconstruction problem is formulated mathematically as a three-dimensional convolution integral of a point spread function with an unknown positron activity distribution and is solved by Fourier transform met...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/25/1/010

    authors: Colsher JG

    更新日期:1980-01-01 00:00:00

  • Calculation of 10 MV x-ray spectra emitted by a medical linear accelerator using the BFGS quasi-Newton method.

    abstract::To calculate photon spectra for a 10 MV x-ray beam emitted by a medical linear accelerator, we performed numerical analysis using the aluminium transmission data obtained along the central axis of the beam under the narrow beam condition corresponding to a 3x3 cm2 field at a 100 cm distance from the source. We used th...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/52/2/014

    authors: Shimozato T,Tabushi K,Kitoh S,Shiota Y,Hirayama C,Suzuki S

    更新日期:2007-01-21 00:00:00

  • Computed LET distributions in the build-up region of tissue for 14 MeV neutrons.

    abstract::Experimental radiobiological investigations of fast neutron beams involve irradiation of thin cell layers. The irradiation of cells is done either in free air or with a material such as graphite, TE plastic or bone-equivalent plastic covering the cells. This paper discusses the computed dose distributions in LET at sh...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/24/5/007

    authors: Bhatia DP,Nagarajan PS

    更新日期:1979-09-01 00:00:00

  • An investigation and explanation of the fall-off of x-ray tube current during an exposure.

    abstract::It was observed that the radiation output of x-ray tubes falls off exponentially during an exposure with a time constant of about 120 ms. The equilibrium value is approximately 15% lower than that at the beginning of the exposure. The clinically noticeable consequences are discrepancies in x-ray generator calibration,...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/25/2/004

    authors: Brezovich IA,Barnes GT

    更新日期:1980-03-01 00:00:00

  • An experimental evaluation of the Agility MLC for motion-compensated VMAT delivery.

    abstract::An algorithm for dynamic multileaf-collimator (dMLC) tracking of a target performing a known a priori, rigid-body motion during volumetric modulated arc therapy (VMAT), has been experimentally validated and applied to investigate the potential of the Agility (Elekta AB, Stockholm, Sweden) multileaf-collimator (MLC) fo...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/58/13/4643

    authors: Davies GA,Clowes P,Bedford JL,Evans PM,Webb S,Poludniowski G

    更新日期:2013-07-07 00:00:00

  • The GSF family of voxel phantoms.

    abstract::Voxel phantoms are human models based on computed tomographic or magnetic resonance images obtained from high-resolution scans of a single individual. They consist of a huge number of volume elements (voxels) and are at the moment the most precise representation of the human anatomy. The purpose of this paper is to in...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1088/0031-9155/47/1/307

    authors: Petoussi-Henss N,Zanki M,Fill U,Regulla D

    更新日期:2002-01-07 00:00:00

  • Quenching correction for volumetric scintillation dosimetry of proton beams.

    abstract::Volumetric scintillation dosimetry has the potential to provide fast, high-resolution, three-dimensional radiation dosimetry. However, scintillators exhibit a nonlinear response at the high linear energy transfer (LET) values characteristic of proton Bragg peaks. The purpose of this study was to develop a quenching co...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/58/2/261

    authors: Robertson D,Mirkovic D,Sahoo N,Beddar S

    更新日期:2013-01-21 00:00:00

  • Monte Carlo dosimetric study of the BEBIG Co-60 HDR source.

    abstract::Although not as widespread as Ir-192, Co-60 is also available on afterloading equipment devoted to high dose rate brachytherapy, mainly addressed to the treatment of gynaecological lesions. The purpose of this study is to obtain the dosimetric parameters of the Co-60 source used by the BEBIG MultiSource remote afterlo...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/50/21/N03

    authors: Ballester F,Granero D,Pérez-Calatayud J,Casal E,Agramunt S,Cases R

    更新日期:2005-11-07 00:00:00

  • Dose distribution to spinal structures from intrathecally administered yttrium-90.

    abstract::Previous treatment of cerebrospinal fluid (CSF) malignancies by intrathecal administration of (131)I-radiolabelled monoclonal antibodies has led to the assumption that more healthy tissue will be spared when a pure beta-emitter such as (90)Y replaces (131)I. The purpose of this study is to compare and quantitatively e...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/51/1/014

    authors: Mardirossian G,Hall M,Montebello J,Stevens P

    更新日期:2006-01-07 00:00:00

  • Detection of in situ mammary cancer in a transgenic mouse model: in vitro and in vivo MRI studies demonstrate histopathologic correlation.

    abstract::Improving the prevention and detection of preinvasive ductal carcinoma in situ (DCIS) is expected to lower both morbidity and mortality from breast cancer. Transgenic mouse models can be used as a 'test bed' to develop new imaging methods and to evaluate the efficacy of candidate preventive therapies. We hypothesized ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/53/19/014

    authors: Jansen SA,Conzen SD,Fan X,Krausz T,Zamora M,Foxley S,River J,Newstead GM,Karczmar GS

    更新日期:2008-10-07 00:00:00

  • Recovery of total I-131 activity within focal volumes using SPECT and 3D OSEM.

    abstract::We experimentally investigated the SPECT recovery of I-131 activity in multiple spheres located simultaneously at different locations within a cylindrical phantom that had an elliptical cross section. The sphere volumes ranged from 209 cc down to 4.2 cc. A Prism 3000 camera and two types of parallel-hexagonal-hole col...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/52/3/017

    authors: Koral KF,Yendiki A,Dewaraja YK

    更新日期:2007-02-07 00:00:00

  • Improving single-event proton CT by removing nuclear interaction events within the energy/range detector.

    abstract::Data filtering is crucial for accurate relative stopping power (RSP) reconstruction in proton CT (pCT). In this work, we assess different filters and their performance for the US pCT collaboration prototype pCT system in Monte Carlo (MC) simulations. The potential of using the recently proposed [Formula: see text]-E f...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/ab2671

    authors: Volz L,Piersimoni P,Johnson RP,Bashkirov VA,Schulte RW,Seco J

    更新日期:2019-08-01 00:00:00

  • Direct aperture optimization for a variable aperture collimator for intensity-modulated radiation therapy.

    abstract::In this note a technique is described for direct aperture optimization of components deliverable by a variable aperture collimator (VAC) for intensity-modulated radiation therapy. The first key result found was that, provided a large number of VAC components were selected for optimization, the resulting fluence profil...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/49/5/n02

    authors: Webb S

    更新日期:2004-03-07 00:00:00

  • Spinal pedicle screw planning using deformable atlas registration.

    abstract::Spinal screw placement is a challenging task due to small bone corridors and high risk of neurological or vascular complications, benefiting from precision guidance/navigation and quality assurance (QA). Implicit to both guidance and QA is the definition of a surgical plan-i.e. the desired trajectories and device sele...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aa5f42

    authors: Goerres J,Uneri A,De Silva T,Ketcha M,Reaungamornrat S,Jacobson M,Vogt S,Kleinszig G,Osgood G,Wolinsky JP,Siewerdsen JH

    更新日期:2017-04-07 00:00:00

  • A new method for modelling the tongue-and-groove in treatment planning systems.

    abstract::Commercial TPSs typically model the tongue-and-groove (TG) by extending the projections of the leaf sides by a certain constant width. However, this model may produce discrepancies of as much as 7%-10% in the calculated average doses, especially for the High Definition multi-leaf collimator (MLC) (Hernandez et al 2017...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aaf098

    authors: Hernandez V,Vera-Sánchez JA,Vieillevigne L,Khamphan C,Saez J

    更新日期:2018-12-10 00:00:00

  • Mucosal deformation from an impinging transonic gas jet and the ballistic impact of microparticles.

    abstract::By means of a transonic gas jet, gene guns ballistically deliver microparticle formulations of drugs and vaccines to the outer layers of the skin or mucosal tissue to induce unique physiological responses for the treatment of a range of conditions. Reported high-speed imaging experiments show that the mucosa deforms s...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/50/19/010

    authors: Hardy MP,Kendall MA

    更新日期:2005-10-07 00:00:00

  • Computational dosimetry in embryos exposed to electromagnetic plane waves over the frequency range of 10 MHz-1.5 GHz.

    abstract::This paper presents calculated specific absorption rate (SAR) dosimetry in 4 and 8 week Japanese pregnant-woman models exposed to plane waves over the frequency range of 10 MHz-1.5 GHz. Two types of 2 mm spatial-resolution pregnant-woman models comprised a woman model, which is similar to the average-sized Japanese ad...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/55/1/N01

    authors: Kawai H,Nagaoka T,Watanabe S,Saito K,Takahashi M,Ito K

    更新日期:2010-01-07 00:00:00

  • Dosimetry system for the irradiation of thin biological samples with therapeutic proton beams.

    abstract::The design and performance of a dosimetric system for the irradiation of thin biological samples with therapeutic proton beams is reported. Protons with initial energies between 40 MeV and 250 MeV are degraded with polystyrene blocks of variable thickness in order to place the sample, an aqueous layer of 10 microm thi...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/47/3/304

    authors: Bashkirov V,Schulte RW

    更新日期:2002-02-07 00:00:00

  • Wavelet compression in medical terahertz pulsed imaging.

    abstract::This paper concerns the robustness of discrete wavelet transform (DWT) compression in terahertz pulsed imaging (TPI). TPI datasets consist of terahertz time-domain series which are sampled at each 'pixel' of the image, leading to file sizes which are typically of the order of several megabytes (MB) per image. This mak...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/47/21/328

    authors: Handley JW,Fitzgerald AJ,Berry E,Boyle RD

    更新日期:2002-11-07 00:00:00

  • The feasibility of estimating and imaging the mechanical behavior of poroelastic materials using axial strain elastography.

    abstract::In this paper, we have investigated the feasibility of imaging the mechanical behavior of poroelastic materials using axial strain elastography. Cylindrical samples obtained from poroelastic materials having different elastic and permeability properties were subjected to a constant compression force (a classical creep...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/52/11/020

    authors: Righetti R,Righetti M,Ophir J,Krouskop TA

    更新日期:2007-06-07 00:00:00

  • Radioluminescence in biomedicine: physics, applications, and models.

    abstract::The electromagnetic spectrum contains different frequency bands useful for medical imaging and therapy. Short wavelengths (ionizing radiation) are commonly used for radiological and radionuclide imaging and for cancer radiation therapy. Intermediate wavelengths (optical radiation) are useful for more localized imaging...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1088/1361-6560/aaf4de

    authors: Klein JS,Sun C,Pratx G

    更新日期:2019-02-06 00:00:00

  • Global point signature for shape analysis of carpal bones.

    abstract::We present a method based on spectral theory for the shape analysis of carpal bones of the human wrist. We represent the cortical surface of the carpal bone in a coordinate system based on the eigensystem of the two-dimensional Helmholtz equation. We employ a metric--global point signature (GPS)--that exploits the sca...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/59/4/961

    authors: Chaudhari AJ,Leahy RM,Wise BL,Lane NE,Badawi RD,Joshi AA

    更新日期:2014-02-21 00:00:00

  • An image processing technique for the identification of contact pixels applied to x-ray CT images of implanted hip prostheses.

    abstract::Uncemented prosthetic joint implants used in orthopaedic surgery are usually coated with a porous surface to encourage bone ingrowth. Better contact between the endosteal bone and the porous surface improves ingrowth, and such contact may be increased if the joint further subsides into position in the first weeks foll...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/38/2/009

    authors: Berry E,Langkamer VG,Jackson PC,Snow M,Goddard PR,Wells PN

    更新日期:1993-02-01 00:00:00

  • Reducing scan angle using adaptive prior knowledge for a limited-angle intrafraction verification (LIVE) system for conformal arc radiotherapy.

    abstract::The purpose of this study is to develop an adaptive prior knowledge guided image estimation technique to reduce the scan angle needed in the limited-angle intrafraction verification (LIVE) system for 4D-CBCT reconstruction. The LIVE system has been previously developed to reconstruct 4D volumetric images on-the-fly du...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/1361-6560/aa6913

    authors: Zhang Y,Yin FF,Zhang Y,Ren L

    更新日期:2017-05-07 00:00:00

  • Site-specific volumetric analysis of lung tumour motion.

    abstract::The treatment of lung cancer with radiation therapy is hindered by respiratory motion. Real-time adjustments to compensate for this motion are hampered by mechanical system latencies and imaging-rate restrictions. To better understand tumour motion behaviour for adaptive image-guided radiation therapy of lung cancer, ...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/55/12/005

    authors: Pepin EW,Wu H,Sandison GA,Langer M,Shirato H

    更新日期:2010-06-21 00:00:00

  • Measurement of the absolute optical properties and cerebral blood volume of the adult human head with hybrid differential and spatially resolved spectroscopy.

    abstract::A hybrid differential and spatially resolved spectroscopy (SRS) technique has been developed to measure absolute absorption coefficient (mu(a)), reduced scattering coefficient (mu'(s)) and cerebral blood volume (CBV) in the adult human head. A spectrometer with both differential and SRS capabilities has been used to c...

    journal_title:Physics in medicine and biology

    pub_type: 杂志文章

    doi:10.1088/0031-9155/51/3/015

    authors: Leung TS,Tachtsidis I,Smith M,Delpy DT,Elwell CE

    更新日期:2006-02-07 00:00:00