Nucleotide sequence of an infectious molecularly cloned genome of ground squirrel hepatitis virus.

Abstract:

:We have determined the complete nucleotide sequence of an infectious cloned genome of ground squirrel hepatitis virus (GSHV), a nonpathogenic member of the hepadnavirus group. The genome is 3,311 base pairs long and contains the major open reading frames described for the related human and woodchuck hepatitis B viruses (HBV and WHV, respectively). These reading frames include genes for the major structural proteins (the surface and core antigens), unassigned open reading frames (A and B), the longer of which is presumed to encode the viral DNA polymerase, and an open reading frame preceding and continuous with the surface antigen gene. The arrangement of these open reading frames is similar to that encountered in the genomes of HBV and WHV: all of the reading frames are encoded on the same strand, they are positioned in the same fashion with respect to each other, and a large portion (at least 51%) of the genome can be translated in two reading frames. Comparisons of the predicted translational products of the three mammalian hepadnaviruses reveal 78% amino acid homology between the proteins of GSHV and WHV and 43% homology between those of GSHV and HBV. In addition, a perfect direct repeat of 10 to 11 base pairs, separated by ca. 46 to 223 base pairs, is present in the three mammalian viruses and in duck hepatitis B virus; the position of the repeats near the 5' termini of the two strands of virion DNA suggests a role in viral replication.

journal_name

J Virol

journal_title

Journal of virology

authors

Seeger C,Ganem D,Varmus HE

doi

10.1128/JVI.51.2.367-375.1984

subject

Has Abstract

pub_date

1984-08-01 00:00:00

pages

367-75

issue

2

eissn

0022-538X

issn

1098-5514

journal_volume

51

pub_type

杂志文章
  • Tandem mengovirus 5' pseudoknots are linked to viral RNA synthesis, not poly(C)-mediated virulence.

    abstract::The RNA genomes from the cardioviruses, hepatoviruses, and aphthoviruses encode two to five tandem pseudoknots within their 5' untranslated regions. These pseudoknots lie adjacent to a pyrimidine-rich sequence, which in cardio- and aphthoviruses takes the form of a homopolymeric poly(C) tract. Seven deletion mutations...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.70.11.8182-8186.1996

    authors: Martin LR,Palmenberg AC

    更新日期:1996-11-01 00:00:00

  • Identification, using synthetic peptides, of the minimum amino acid sequence from the retroviral transmembrane protein p15E required for inhibition of lymphoproliferation and its similarity to gp21 of human T-lymphotropic virus types I and II.

    abstract::Synthetic peptides containing portions of a highly conserved region of retroviral transmembrane proteins of human and animal retroviruses were tested for their ability to inhibit lymphoproliferation to determine the minimum amino acid sequence required. The previously reported immunosuppression mediated by the peptide...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.63.8.3250-3256.1989

    authors: Ruegg CL,Monell CR,Strand M

    更新日期:1989-08-01 00:00:00

  • Effect of human papillomavirus type 16 oncogenes on MAP kinase activity.

    abstract::The mitogen-activated protein (MAP) kinase signal transduction pathway is an intracellular signaling cascade which mediates cellular responses to growth and differentiation factors. The MAP kinase pathway can be activated by a wide range of stimuli dependent on the cell types, and this is normally a transient response...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.12.8051-8056.1995

    authors: Gu Z,Matlashewski G

    更新日期:1995-12-01 00:00:00

  • Identification of SERINC5-001 as the Predominant Spliced Isoform for HIV-1 Restriction.

    abstract::Among the five serine incorporator (SERINC) family members, SERINC5 (Ser5) was reported to strongly inhibit HIV-1 replication, which is counteracted by Nef. Ser5 produces 5 alternatively spliced isoforms: Ser5-001 has 10 putative transmembrane domains, whereas Ser5-004, -005, -008a, and -008b do not have the last one....

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00137-17

    authors: Zhang X,Zhou T,Yang J,Lin Y,Shi J,Zhang X,Frabutt DA,Zeng X,Li S,Venta PJ,Zheng YH

    更新日期:2017-04-28 00:00:00

  • Characterization of intracellular and extracellular vaccinia virus variants: N1-isonicotinoyl-N2-3-methyl-4-chlorobenzoylhydrazine interferes with cytoplasmic virus dissemination and release.

    abstract::Infectious vaccinia virus can be purified from whole cells by experimentally induced lysis (intracellular virus) or from supernatant growth medium (extracellular virus). Extracellular virus and intracellular virus differed by buoyant density (1.237 versus 1.272 g/cm3), phospholipid content and composition, and polypep...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.39.3.903-913.1981

    authors: Hiller G,Eibl H,Weber K

    更新日期:1981-09-01 00:00:00

  • The Human T-Cell Leukemia Virus Type 1 Basic Leucine Zipper Factor Attenuates Repair of Double-Stranded DNA Breaks via Nonhomologous End Joining.

    abstract::Adult T-cell leukemia (ATL) is a fatal malignancy of CD4+ T cells infected with human T-cell leukemia virus type 1 (HTLV-1). ATL cells often exhibit random gross chromosomal rearrangements that are associated with the induction and improper repair of double-stranded DNA breaks (DSBs). The viral oncoprotein Tax has bee...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00672-18

    authors: Rushing AW,Hoang K,Polakowski N,Lemasson I

    更新日期:2018-07-17 00:00:00

  • Development of Stable Rotavirus Reporter Expression Systems.

    abstract::Engineered recombinant viruses expressing reporter genes have been developed for real-time monitoring of replication and for mass screening of antiviral inhibitors. Recently, we reported using a reverse genetics system to develop the first recombinant reporter rotaviruses (RVs) that expressed NanoLuc (NLuc) luciferase...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01774-18

    authors: Kanai Y,Kawagishi T,Nouda R,Onishi M,Pannacha P,Nurdin JA,Nomura K,Matsuura Y,Kobayashi T

    更新日期:2019-02-05 00:00:00

  • Simian immunodeficiency virus from African green monkeys.

    abstract::Simian immunodeficiency virus (SIV) was isolated from the total peripheral blood mononuclear cell population and the monocyte-macrophage adherent cell population of three seropositive green monkeys originating from Kenya. SIV from these African green monkeys (SIVagm) was isolated and continuously produced with the MOL...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.11.4123-4128.1988

    authors: Daniel MD,Li Y,Naidu YM,Durda PJ,Schmidt DK,Troup CD,Silva DP,MacKey JJ,Kestler HW 3rd,Sehgal PK

    更新日期:1988-11-01 00:00:00

  • Expression of hepatitis A virus cDNA in Escherichia coli: antigenic VP1 recombinant protein.

    abstract::The genome of hepatitis A virus (HAV) was reverse transcribed into cDNA and molecularly cloned. cDNA clones coding for the capsid protein VP1 that carries the major HAV antigen were cloned into the expression vector pUR290 and expressed in Escherichia coli. The recombinant fusion protein reacted in an immunoblot with ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.11.3645-3647.1987

    authors: Ostermayr R,von der Helm K,Gauss-Müller V,Winnacker EL,Deinhardt F

    更新日期:1987-11-01 00:00:00

  • Comparison of the restriction endonuclease maps of unintegrated proviral DNAs from four xenotropic murine leukemia viruses.

    abstract::From purified linear and superhelical DNAs, the restriction endonuclease maps of four xenotropic murine leukemia virus DNAs from NFS, NZB, BALB/c, and AKR mice were determined with ten restriction endonucleases. Each xenotropic proviral DNA was found to be a unique restriction endonuclease map, with differences in the...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.40.3.963-970.1981

    authors: Joseph DR

    更新日期:1981-12-01 00:00:00

  • Design and intracellular activity of a human single-chain antibody to human immunodeficiency virus type 1 conserved gp41 epitope.

    abstract::A human lymphoid cell line (F172-D8) excreting a human immunodeficiency virus type 1 (HIV-1) anti-gp41 monoclonal antibody was used to construct a plasmid containing the cDNA of the single-chain variable fragment (scFvD8) corresponding to this antibody. A stable human osteosarcoma cell line was obtained which expresse...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.74.12.5712-5715.2000

    authors: Legastelois I,Desgranges C

    更新日期:2000-06-01 00:00:00

  • Exosomal communication goes viral.

    abstract::Exosomes are small vesicles secreted from cells that participate in intercellular communication events. Accumulating evidence demonstrates that host exosome pathways are hijacked by viruses and that virally modified exosomes contribute to virus spread and immune evasion. In the case of tumor viruses, recent findings s...

    journal_title:Journal of virology

    pub_type: 杂志文章,评审

    doi:10.1128/JVI.02470-14

    authors: Meckes DG Jr

    更新日期:2015-05-01 00:00:00

  • Human cytomegalovirus UL50 and UL53 recruit viral protein kinase UL97, not protein kinase C, for disruption of nuclear lamina and nuclear egress in infected cells.

    abstract::Herpesvirus nucleocapsids traverse the nuclear envelope into the cytoplasm in a process called nuclear egress that includes disruption of the nuclear lamina. In several herpesviruses, a key player in nuclear egress is a complex of two proteins, whose homologs in human cytomegalovirus (HCMV) are UL50 and UL53. However,...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02358-13

    authors: Sharma M,Kamil JP,Coughlin M,Reim NI,Coen DM

    更新日期:2014-01-01 00:00:00

  • Pathogenesis of Influenza D Virus in Cattle.

    abstract:UNLABELLED:Cattle have been proposed as the natural reservoir of a novel member of the virus family Orthomyxoviridae, which has been tentatively classified as influenza D virus (IDV). Although isolated from sick animals, it is unclear whether IDV causes any clinical disease in cattle. To address this aspect of Koch's p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03122-15

    authors: Ferguson L,Olivier AK,Genova S,Epperson WB,Smith DR,Schneider L,Barton K,McCuan K,Webby RJ,Wan XF

    更新日期:2016-05-27 00:00:00

  • The mitogenic function of hepatitis B virus X protein resides within amino acids 51 to 140 and is modulated by N- and C-terminal regulatory regions.

    abstract::The hepatitis B virus (HBV) X protein (pX) is implicated in hepatocarcinogenesis by an unknown mechanism. pX variants encoded by HBV genomes found integrated in genomic DNA from liver tumors of patients with hepatocellular carcinoma (HCC) generally lack amino acids 134 to 154. Since deregulation of mitogenic pathways ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00661-06

    authors: Li H,Chi CY,Lee S,Andrisani OM

    更新日期:2006-11-01 00:00:00

  • Membrane proteins specified by herpes simplex viruses. IV. Conformation of the virion glycoprotein designated VP7(B2).

    abstract::The herpes simplex virus glycoprotein designated VP7(B2) is extracted from virions by nonionic detergent in the form of an oligomer, whereas the other detergent-soluble envelope proteins appear to be extracted as monomers. The subunits of the VP7(B2) oligomer cannot be dissociated by 2-mercaptoethanol and are also res...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.29.3.1159-1167.1979

    authors: Sarmiento M,Spear PG

    更新日期:1979-03-01 00:00:00

  • Simian virus 40-host cell interactions. II. Cytoplasmic and nucleolar accumulation of simian virus 40 virion protein.

    abstract::We have used immunofluorescence in parallel with transmission and scanning electron microscopy to characterize the unusual cytoplasmic and nucleolar accumulation of Simian virus 40 (SV40) virion protein (C antigen) at restrictive temperatures (39 to 41 C) in monkey cells infected with a temperature-sensitive mutant of...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.14.6.1530-1546.1974

    authors: Widmer C,Robb JA

    更新日期:1974-12-01 00:00:00

  • The membrane-binding domain and myristylation of p60v-src are not essential for stimulation of cell proliferation.

    abstract::Previous studies showed that the amino-terminal domain of Rous sarcoma virus p60v-src involved in myristylation and membrane association of the protein is required for morphological transformation and anchorage independence. Analysis of src delection mutants revealed that the amino-terminal one-third of p60v-src, incl...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.5.1678-1681.1987

    authors: Calothy G,Laugier D,Cross FR,Jove R,Hanafusa T,Hanafusa H

    更新日期:1987-05-01 00:00:00

  • Genetic studies of coliphage P1. III. Extended genetic map.

    abstract::An extensive genetic map of coliphage P1 has been constructed for 113 amber mutants, using primarily a modification of the conventional complementation spot test. These spot tests failed to classify the mutants into cistrons, but when they were quantitated they permitted assignment of the mutants into 10 linkage clust...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.20.1.177-187.1976

    authors: Walker DH Jr,Walker JT

    更新日期:1976-10-01 00:00:00

  • Interplay between PKCδ and Sp1 on histone deacetylase inhibitor-mediated Epstein-Barr virus reactivation.

    abstract::Epstein-Barr virus (EBV) undergoes latent and lytic replication cycles, and its reactivation from latency to lytic replication is initiated by expression of the two viral immediate-early transactivators, Zta and Rta. In vitro, reactivation of EBV can be induced by anti-immunoglobulin, tetradecanoyl phorbol acetate, an...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01602-10

    authors: Tsai PF,Lin SJ,Weng PL,Tsai SC,Lin JH,Chou YC,Tsai CH

    更新日期:2011-03-01 00:00:00

  • A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

    abstract::RNA silencing is a potent means of antiviral defense in plants and animals. A hallmark of this defense response is the production of 21- to 24-nucleotide viral small RNAs via mechanisms that remain to be fully understood. Many viruses encode suppressors of RNA silencing, and some viral RNAs function directly as silenc...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02339-06

    authors: Itaya A,Zhong X,Bundschuh R,Qi Y,Wang Y,Takeda R,Harris AR,Molina C,Nelson RS,Ding B

    更新日期:2007-03-01 00:00:00

  • Porcine reproductive and respiratory syndrome virus comparison: divergent evolution on two continents.

    abstract::Porcine reproductive and respiratory syndrome virus (PRRSV) is a recently described arterivirus responsible for disease in swine worldwide. Comparative sequence analysis of 3'-terminal structural genes of the single-stranded RNA viral genome revealed the presence of two genotypic classes of PRRSV, represented by the p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.1.270-280.1999

    authors: Nelsen CJ,Murtaugh MP,Faaberg KS

    更新日期:1999-01-01 00:00:00

  • Infectivity and sedimentation of rhinovirus ribonucleic acid.

    abstract::Ribonucleic acid extracted from the virions of two human rhinoviruses is infective and is similar in size to poliovirus ribonucleic acid. ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.7.2.278-280.1971

    authors: Nair CN,Lonberg-Holm KK

    更新日期:1971-02-01 00:00:00

  • Infection of brain-derived cells with the human immunodeficiency virus.

    abstract::A malignant glioma cell line was infected with the human T-lymphotropic virus type IIIB isolate of the human immunodeficiency virus. Infection appeared to be latent rather than productive. Through contact with monocytic or lymphoid cells, the virus present in the glioma cells could be transmitted and gave rise to a fu...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.61.4.1244-1247.1987

    authors: Chiodi F,Fuerstenberg S,Gidlund M,Asjö B,Fenyö EM

    更新日期:1987-04-01 00:00:00

  • Very few substitutions in a germ line antibody are required to initiate significant domain exchange.

    abstract::2G12 is a broadly neutralizing anti-HIV-1 monoclonal human IgG1 antibody reactive with a high-mannose glycan cluster on the surface of glycoprotein gp120. A key feature of this very highly mutated antibody is domain exchange of the heavy-chain variable region (V(H)) with the V(H) of the adjacent Fab of the same immuno...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01111-10

    authors: Huber M,Le KM,Doores KJ,Fulton Z,Stanfield RL,Wilson IA,Burton DR

    更新日期:2010-10-01 00:00:00

  • In vivo expansion of the residual tumor antigen-specific CD8+ T lymphocytes that survive negative selection in simian virus 40 T-antigen-transgenic mice.

    abstract::Mice that express the viral oncoprotein simian virus 40 (SV40) large T antigen (T-Ag) as a transgene provide useful models for the assessment of the state of the host immune response in the face of spontaneous tumor progression. Line SV11 (H2(b)) mice develop rapidly progressing choroid plexus tumors due to expression...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.78.4.1751-1762.2004

    authors: Schell TD

    更新日期:2004-02-01 00:00:00

  • Features of the adeno-associated virus origin involved in substrate recognition by the viral Rep protein.

    abstract::We previously demonstrated that the adeno-associated virus (AAV) Rep68 and Rep78 proteins are able to nick the AAV origin of DNA replication at the terminal resolution site (trs) in an ATP-dependent manner. Using four types of modified or mutant substrates, we now have investigated the substrate requirements of Rep68 ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.10.6096-6104.1993

    authors: Snyder RO,Im DS,Ni T,Xiao X,Samulski RJ,Muzyczka N

    更新日期:1993-10-01 00:00:00

  • Fusion formation by the uncleaved spike protein of murine coronavirus JHMV variant cl-2.

    abstract::The fusogenic properties of the uncleaved spike (S) protein of murine coronavirus JHMV variant cl-2 were studied by expressing the S protein with a deleted putative cleavage site. The amino acid sequence of the putative cleavage site, Arg-Arg-Ala-Arg-Arg, was replaced by Arg-Thr-Ala-Leu-Glu by in vitro mutagenesis of ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.3.1195-1202.1993

    authors: Taguchi F

    更新日期:1993-03-01 00:00:00

  • Early steps of clathrin-mediated endocytosis involved in phagosomal escape of Fcgamma receptor-targeted adenovirus.

    abstract::Adenovirus type 2 (Ad2) and Ad5 enter epithelial cells via the coxsackievirus B Ad receptor (CAR) and alpha(v) integrin coreceptors. In the absence of CAR, they can be directed to the Fcgamma receptor 1 of hematopoietic cells by an adaptor comprising the extracellular CAR domain and the Fc portion of a human immunoglo...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.4.2604-2613.2005

    authors: Meier O,Gastaldelli M,Boucke K,Hemmi S,Greber UF

    更新日期:2005-02-01 00:00:00

  • Reovirus variants selected during persistent infections of L cells contain mutations in the viral S1 and S4 genes and are altered in viral disassembly.

    abstract::Reoviruses isolated from persistently infected cultures (PI viruses) can grow in the presence of ammonium chloride, a weak base that blocks acid-dependent proteolysis of viral outer-capsid proteins during viral entry into cells. We used reassortant viruses isolated from crosses of wild-type (wt) reovirus strain, type ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.71.2.1362-1369.1997

    authors: Wetzel JD,Wilson GJ,Baer GS,Dunnigan LR,Wright JP,Tang DS,Dermody TS

    更新日期:1997-02-01 00:00:00