The crystal structure of HaeIII methyltransferase convalently complexed to DNA: an extrahelical cytosine and rearranged base pairing.

Abstract:

:Many organisms expand the information content of their genome through enzymatic methylation of cytosine residues. Here we report the 2.8 A crystal structure of a bacterial DNA (cytosine-5)-methyltransferase (DCMtase), M. HaeIII, bound covalently to DNA. In this complex, the substrate cytosine is extruded from the DNA helix and inserted into the active site of the enzyme, as has been observed for another DCMtase, M. HhaI. The DNA is bound in a cleft between the two domains of the protein and is distorted from the characteristic B-form conformation at its recognition sequence. A comparison of structures shows a variation in the mode of DNA recognition: M. HaeIII differs from M. HhaI in that the remaining bases in its recognition sequence undergo an extensive rearrangement in their pairing. In this process, the bases are unstacked, and a gap 8 A long opens in the DNA.

journal_name

Cell

journal_title

Cell

authors

Reinisch KM,Chen L,Verdine GL,Lipscomb WN

doi

10.1016/0092-8674(95)90060-8

subject

Has Abstract

pub_date

1995-07-14 00:00:00

pages

143-53

issue

1

eissn

0092-8674

issn

1097-4172

pii

0092-8674(95)90060-8

journal_volume

82

pub_type

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