Abstract:
:In mesophiles, triosephosphate isomerase (TIM) is an obligated homodimer. We have previously shown that monomeric folding intermediates are common in the chemical unfolding of TIM, where dissociation provides 75% of the overall conformational stability of the dimer. However, analysis of the crystallographic structure shows that, during unfolding, intermonomeric contacts contribute to only 5% of the overall increase in accessible surface area. In this work several methodologies were used to characterize the thermal dissociation and unfolding of the TIM from Entamoeba histolytica (EhTIM) and a monomeric variant obtained by chemical derivatization (mEhTIM). During EhTIM unfolding, sequential transitions corresponding to dimer dissociation into a compact monomeric intermediate followed by unfolding and further aggregation of the intermediate occurred. In the case of mEhTIM, a single transition, analogous to the second transition of EhTIM, was observed. Calorimetric, spectroscopic, hydrodynamic, and functional evidence shows that dimer dissociation is not restricted to localized interface reorganization. Dissociation represents 55% (DeltaH(Diss) = 146.8 kcal mol(-1)) of the total enthalpy change (DeltaH(Tot) = 266 kcal mol(-1)), indicating that this process is linked to substantial unfolding. We propose that, rather than a rigid body process, subunit assembly is best represented by a fly-casting mechanism. In TIM, catalysis is restricted to the dimer; therefore, the interface can be viewed as the final nucleation motif that directs assembly, folding, and function.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Tellez LA,Blancas-Mejia LM,Carrillo-Nava E,Mendoza-Hernández G,Cisneros DA,Fernández-Velasco DAdoi
10.1021/bi801360ksubject
Has Abstractpub_date
2008-11-04 00:00:00pages
11665-73issue
44eissn
0006-2960issn
1520-4995journal_volume
47pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::The interactions of HIV-1 Env (gp120-gp41) with CD4 and coreceptors trigger a barrage of conformational changes in Env that drive the membrane fusion process. Various regions of gp41 have profound effects on HIV entry and budding. However, the precise interactions between gp41 and the membrane have not been elucidated...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi701920f
更新日期:2008-02-19 00:00:00
abstract::The disulfide structure of sillucin, a highly knotted, cysteine-rich, antimicrobial peptide, isolated from Rhizomucor pusillus, has been determined to be Cys2--Cys7, Cys12--Cys24, Cys13--Cys30, and Cys14--Cys21 by disulfide mass mapping based on partial reduction and CN-induced cleavage enabled by cyanylation. The den...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi002229x
更新日期:2001-04-17 00:00:00
abstract::Calf brain tubulin was subjected to isoelectric focusing and tryptic peptide map analysis. Results from isoelectric focusing experiments showed a total number of 17 well-resolved protein peaks. The number of peaks and the mass distribution under each peak remained the same when the concentration of protein or ampholyt...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00512a006
更新日期:1981-04-28 00:00:00
abstract::It is generally accepted that electron transfer in bacterial photosynthesis is driven by the first singlet excited state of a special pair of bacteriochlorophylls (P*). We have examined the first steps of electron transfer in a mutant of the Rhodobacter sphaeroides reaction center in which charge separation from P* is...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9703756
更新日期:1997-06-10 00:00:00
abstract::Streptomyces avermitilis, an industrial organism responsible for the production of the anthelminthic avermectins, harbors a 13.4 kb gene cluster containing 13 unidirectionally transcribed open reading frames corresponding to the apparent biosynthetic operon for the sesquiterpene antibiotic pentalenolactone. The advanc...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi060419n
更新日期:2006-05-16 00:00:00
abstract::Nuclear DNA of the marine chromophytic alga Olisthodiscus luteus was analyzed in this study. Reassociation kinetics analysis has shown that 440-nucleotide DNA fragments from the genome of this alga contain 4% foldback, 58% repetitive, and 34% single-copy sequences. Precise analysis using isolated single-copy DNA revea...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00527a023
更新日期:1981-11-24 00:00:00
abstract::Recombinant human brain calbindin D(28K) (rHCaBP), human Cu,Zn-superoxide dismutase (HCuZnSOD), rabbit muscle glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and bovine serum albumin (BSA) were found to be S-glutathiolated in decomposed S-nitrosoglutathione (GSNO) solutions. Tryptic or Glu-C digestion and MALDI-TOF ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi035924o
更新日期:2004-04-06 00:00:00
abstract::The primary photochemical event of photoactive yellow protein (PYP) was studied by laser flash photolysis experiments on a subpicosecond-nanosecond time scale. PYP was excited by a 390-nm pulse, and the transient difference absorption spectra were recorded by a multichannel spectrometer for a more reliable spectral an...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi002437p
更新日期:2001-05-22 00:00:00
abstract::The effects of urea on apomyoglobin solubility have been investigated. Apomyoglobin precipitation was found to be a thermodynamically reversible process independent of the pathway of aggregation. A liquid-solid phase diagram was constructed for the precipitation of apomyoglobin as a function of urea and protein concen...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00066a006
更新日期:1993-04-20 00:00:00
abstract::The generation of multiprotein complexes at receptors and adapter proteins is crucial for the activation of intracellular signaling pathways. In this study, we used multiple biochemical and biophysical methods to examine the binding properties of several SH2 and SH3 domain-containing signaling proteins as they interac...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0357311
更新日期:2004-04-13 00:00:00
abstract::Calcium is required for the substrate binding and for the chemical step of the interfacial catalytic turnover cycle of pancreatic phospholipase A2 (PLA2), but not for the binding of the enzyme to the interface. The role of calcium and other divalent cations (C) is analyzed for the effect on the substrate binding and k...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9728607
更新日期:1998-09-08 00:00:00
abstract::Intrinsic factor (IF(50)) is a cobalamin (Cbl)-transporting protein of 50 kDa, which can be cleaved into two fragments: the 30 kDa N-terminal peptide IF(30) and the 20 kDa C-terminal glycopeptide IF(20). Experiments on binding of Cbl to IF(30), IF(20), and IF(50) revealed comparable association rate constants (k(+)(Cb...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi047936v
更新日期:2005-03-08 00:00:00
abstract::In the ras gene superfamily, codon 12 (-TGGTG-) of the K-ras gene is the most frequently mutated codon in human cancers. Recently, we have found that bulky chemical carcinogens preferentially form DNA adducts at codons 12 and 14 (-CGTAG-) in the K-ras gene in normal human bronchial epithelial (NHBE) cells. Furthermore...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi034631s
更新日期:2003-08-26 00:00:00
abstract::Decarboxylated S-adenosylmethionine was found to be a substrate for the nuclear acetyltransferases that act on polyamines and on histones. The rate of acetylation of decarboxylated S-adenosylmethionine was more than twice that of spermidine at saturating substrate concentrations, and decarboxylated S-adenosylmethionin...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00350a016
更新日期:1986-01-28 00:00:00
abstract::We report a new observation of the role of Escherichia coli single-strand DNA binding protein (SSB) in synthesis of primer RNA (pRNA) catalyzed by.E.coli primase on the SSB-coated phage G4oric template. Using a set of ATP priming substrates with reactive groups attached to the 5' gamma-phosphate on different length "a...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi972455f
更新日期:1998-03-17 00:00:00
abstract::Melittin is a 26-residue peptide which undergoes high-affinity calcium-dependent binding by calmodulin [Barnette, M.S., Daly, R., & Weiss, B. (1983) Biochem. Pharmacol. 32, 2929; Comte, M., Maulet, Y., & Cox, J.A. (1983) Biochem. J. 209, 269; Anderson, S.R., & Malencik, D.A. (1986) Calcium Cell Funct. 6, 1]. The resul...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00406a021
更新日期:1988-03-22 00:00:00
abstract::Chemical modification, mutagenesis, chemical rescue, and isotope effect studies are used to identify and probe the roles of several conserved amino acid groups in catalysis by human dihydroorotate dehydrogenase. Time- and pH-dependent inactivation of human dihydroorotate dehydrogenase by trinitrobenzenesulfonate impli...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi000630d
更新日期:2000-07-11 00:00:00
abstract::To date, little work has been conducted on the relationship between solute and buffer molecules and conformational exchange motion in enzymes. This study uses solution NMR to examine the effects of phosphate, sulfate, and acetate in comparison to MES- and HEPES-buffered references on the chemical shift perturbation an...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi400973e
更新日期:2013-09-17 00:00:00
abstract::The carboxypeptidase inhibitor from Russet Burbank potatoes (C. A. Ryan et al. (1974b), J. Biol. Chem 249, 5495) is a mixture of approximately equal amounts of two polypeptide chains containing 38 and 39 amino acid residues, respectively. The chains differ in their amino terminal sequence only, one beginning with smal...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00677a036
更新日期:1975-03-25 00:00:00
abstract::Laser light scattering has been applied to a systematic study of a heterogeneous solution of tubulin at low temperature--conditions under which tubulin assembly into microtubules does not take place. Methods of analyzing laser light scattering results obtained from solutions containing multiple components are discusse...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00645a020
更新日期:1977-12-27 00:00:00
abstract::To identify residues and segments in the central region of apolipoprotein A-I (apoA-I) that are important for the protein structure and stability, we studied the effects of four double charge ablations, D102A/D103A, E110A/E111A, R116V/K118A, and R160V/H162A, and two deletion mutations, Delta(61-78) and Delta(121-142),...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi051669r
更新日期:2006-01-31 00:00:00
abstract::Both the male and the female of Mastomys natalensis, an African rat, have high levels of nerve growth factor (NGF) in their submaxillary glands. Mastomys high molecular weight (HMW) NGF was purified by gel filtration and ion-exchange chromatography and was compared with HMW NGF from the male mouse submaxillary gland. ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00418a007
更新日期:1988-09-06 00:00:00
abstract::The interaction of bovine spleen profilin with ATP- and ADP-G-actin and poly(L-proline) has been studied by spectrofluorimetry, analytical ultracentrifugation, and rapid kinetics in low ionic strength buffer. Profilin binding to G-actin is accompanied by a large quenching of tryptophan fluorescence, allowing the measu...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00194a011
更新日期:1994-07-19 00:00:00
abstract::We have previously shown that the anticodon of methionine tRNAs contains most, if not all, of the nucleotides required for specific recognition of tRNA substrates by Escherichia coli methionyl-tRNA synthetase [Schulman, L. H., & Pelka, H. (1988) Science 242, 765-768]. Previous cross-linking experiments have also ident...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00461a003
更新日期:1990-03-06 00:00:00
abstract::The presence and subcellular localization of UDP-Gal:glucosylceramide beta 1----4galactosyltransferase (GalT-2) was investigated in rat liver. For this purpose, purified Golgi apparatus, endoplasmic reticulum, and plasma membrane fractions were prepared from the liver and used as the enzyme source for detecting GalT-2...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00224a021
更新日期:1991-03-12 00:00:00
abstract::Furamidine and related diamidines represent a promising series of drugs active against widespread parasites, in particular the Pneumocystic carinii pathogen. In this series, the phenylfuranbenzimidazole diamidine derivative DB293 was recently identified as the first unfused aromatic dication capable of forming stacked...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0108453
更新日期:2001-08-21 00:00:00
abstract::The 19-transmembrane multisubunit γ-secretase complex generates the amyloid β-peptide (Aβ) of Alzheimer's disease (AD) by intramembrane proteolysis of the β-amyloid precursor protein (APP). Despite substantial advances in elucidating how this protein complex functions, the effect of the local membrane lipid microenvir...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi300303g
更新日期:2012-05-01 00:00:00
abstract::Triglyceride analogues were synthesized in which one of the primary acyl ester functions has been replaced by an alkyl group and the secondary acyl ester bond has been replaced by an acyl amino bond. The chain length at either position was varied, and both (R)- and (S)-enantiomers of each compound were synthesized. Th...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00019a020
更新日期:1995-05-16 00:00:00
abstract::N-Linked sugar chains were liberated by hydrazinolysis from porcine zona pellucida glycoproteins obtained from ovarian follicular oocytes. Neutral sugar chains were separated from acidic ones by paper electrophoresis and fractionated with a serial lectin column chromatography and Bio-Gel P-4 column chromatography. The...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00222a012
更新日期:1991-02-26 00:00:00
abstract::We have recently reported the cation-induced self-assembly of DNA oligomers of the general sequence C4T4G4T1-4G4 into high-molecular weight multistranded structures [Marotta, S.P., Tamburri, P.A., and Sheardy, R.D. (1996) Biochemistry 35, 10484-10492]. The architecture of the proposed structure consists of a series of...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi973009v
更新日期:1998-03-03 00:00:00