Jmjd1a and Jmjd2c histone H3 Lys 9 demethylases regulate self-renewal in embryonic stem cells.

Abstract:

:Embryonic stem (ES) cells are pluripotent cells with the ability to self-renew indefinitely. These unique properties are controlled by genetic factors and chromatin structure. The exit from the self-renewing state is accompanied by changes in epigenetic chromatin modifications such as an induction in the silencing-associated histone H3 Lys 9 dimethylation and trimethylation (H3K9Me2/Me3) marks. Here, we show that the H3K9Me2 and H3K9Me3 demethylase genes, Jmjd1a and Jmjd2c, are positively regulated by the ES cell transcription factor Oct4. Interestingly, Jmjd1a or Jmjd2c depletion leads to ES cell differentiation, which is accompanied by a reduction in the expression of ES cell-specific genes and an induction of lineage marker genes. Jmjd1a demethylates H3K9Me2 at the promoter regions of Tcl1, Tcfcp2l1, and Zfp57 and positively regulates the expression of these pluripotency-associated genes. Jmjd2c acts as a positive regulator for Nanog, which encodes for a key transcription factor for self-renewal in ES cells. We further demonstrate that Jmjd2c is required to reverse the H3K9Me3 marks at the Nanog promoter region and consequently prevents transcriptional repressors HP1 and KAP1 from binding. Our results connect the ES cell transcription circuitry to chromatin modulation through H3K9 demethylation in pluripotent cells.

journal_name

Genes Dev

journal_title

Genes & development

authors

Loh YH,Zhang W,Chen X,George J,Ng HH

doi

10.1101/gad.1588207

subject

Has Abstract

pub_date

2007-10-15 00:00:00

pages

2545-57

issue

20

eissn

0890-9369

issn

1549-5477

pii

21/20/2545

journal_volume

21

pub_type

杂志文章
  • Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes.

    abstract::An RNA-based gene silencing pathway that protects bacteria and archaea from viruses and other genome invaders is hypothesized to arise from guide RNAs encoded by CRISPR loci and proteins encoded by the cas genes. CRISPR loci contain multiple short invader-derived sequences separated by short repeats. The presence of v...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1742908

    authors: Carte J,Wang R,Li H,Terns RM,Terns MP

    更新日期:2008-12-15 00:00:00

  • Localized surface activity of torso, a receptor tyrosine kinase, specifies terminal body pattern in Drosophila.

    abstract::The subdivision of the Drosophila body into distinct terminal and central domains depends on the torso (tor) protein, a putative receptor tyrosine kinase that is active at both ends of the early embryo. We show that the tor protein is uniformly expressed along the surface membrane of early embryos despite its localize...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.3.12b.2025

    authors: Casanova J,Struhl G

    更新日期:1989-12-01 00:00:00

  • Activation of a yeast replication origin near a double-stranded DNA break.

    abstract::Irradiation in the G1 phase of the cell cycle delays the onset of DNA synthesis and transiently inhibits the activation of replication origins in mammalian cells. It has been suggested that this inhibition is the result of the loss of torsional tension in the DNA after it has been damaged. Because irradiation causes D...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.8.5.554

    authors: Raghuraman MK,Brewer BJ,Fangman WL

    更新日期:1994-03-01 00:00:00

  • Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo.

    abstract::Regions on the surface of human TATA-box binding protein (TBP) required for activated transcription in vivo were defined by construction of a library of 89 surface residue mutants with radical substitutions that were assayed for their ability to support activated transcription in vivo, basal transcription in vitro, an...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.19.2491

    authors: Bryant GO,Martel LS,Burley SK,Berk AJ

    更新日期:1996-10-01 00:00:00

  • miR760 regulates ATXN1 levels via interaction with its 5' untranslated region.

    abstract::Identifying modifiers of dosage-sensitive genes involved in neurodegenerative disorders is imperative to discover novel genetic risk factors and potential therapeutic entry points. In this study, we focus on Ataxin-1 (ATXN1), a dosage-sensitive gene involved in the neurodegenerative disease spinocerebellar ataxia type...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.339317.120

    authors: Nitschke L,Tewari A,Coffin SL,Xhako E,Pang K,Gennarino VA,Johnson JL,Blanco FA,Liu Z,Zoghbi HY

    更新日期:2020-09-01 00:00:00

  • Constitutive mTORC1 activation by a herpesvirus Akt surrogate stimulates mRNA translation and viral replication.

    abstract::All viruses require cellular ribosomes to translate their mRNAs. Viruses producing methyl-7 (m⁷) GTP-capped mRNAs, like Herpes Simplex Virus-1 (HSV-1), stimulate cap-dependent translation by activating mTORC1 to inhibit the translational repressor 4E-binding protein 1 (4E-BP1). Here, we establish that the HSV-1 kinase...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1978310

    authors: Chuluunbaatar U,Roller R,Feldman ME,Brown S,Shokat KM,Mohr I

    更新日期:2010-12-01 00:00:00

  • The function of Xenopus Bloom's syndrome protein homolog (xBLM) in DNA replication.

    abstract::The Bloom's syndrome gene (BLM) plays a pivotal role in the maintenance of genomic stability in somatic cells. It encodes a DNA helicase (BLM) of the RecQ family, but the exact function of BLM remains elusive. To study this question, we have cloned the BLM homolog of the frog Xenopus laevis (xBLM) and have raised anti...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.822400

    authors: Liao S,Graham J,Yan H

    更新日期:2000-10-15 00:00:00

  • Ephrin-B1 forward and reverse signaling are required during mouse development.

    abstract::Eph receptors and ephrin ligands are key players in many developmental processes including embryo patterning, angiogenesis, and axon guidance. Eph/ephrin interactions lead to the generation of a bidirectional signal, in which both the Eph receptors and the ephrins activate downstream signaling cascades simultaneously....

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1171704

    authors: Davy A,Aubin J,Soriano P

    更新日期:2004-03-01 00:00:00

  • Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly.

    abstract::In cytoplasm, the survival of motor neuron (SMN) complex delivers pre-small nuclear RNAs (pre-snRNAs) to the heptameric Sm ring for the assembly of the ring complex on pre-snRNAs at the conserved Sm site [A(U)4-6G]. Gemin5, a WD40 protein component of the SMN complex, is responsible for recognizing pre-snRNAs. In addi...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.288340.116

    authors: Xu C,Ishikawa H,Izumikawa K,Li L,He H,Nobe Y,Yamauchi Y,Shahjee HM,Wu XH,Yu YT,Isobe T,Takahashi N,Min J

    更新日期:2016-11-01 00:00:00

  • GCN2 sustains mTORC1 suppression upon amino acid deprivation by inducing Sestrin2.

    abstract::Mammalian cells possess two amino acid-sensing kinases: general control nonderepressible 2 (GCN2) and mechanistic target of rapamycin complex 1 (mTORC1). Their combined effects orchestrate cellular adaptation to amino acid levels, but how their activities are coordinated remains poorly understood. Here, we demonstrate...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.269324.115

    authors: Ye J,Palm W,Peng M,King B,Lindsten T,Li MO,Koumenis C,Thompson CB

    更新日期:2015-11-15 00:00:00

  • Glucose regulates protein interactions within the yeast SNF1 protein kinase complex.

    abstract::The SNF1 protein kinase is broadly conserved in eukaryotes and has been implicated in responses to environmental and nutritional stress. In yeast, the SNF1 kinase has a central role in the response to glucose starvation. SNF1 is associated with its activating subunit, SNF4, and other proteins in complexes. Using the t...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.24.3105

    authors: Jiang R,Carlson M

    更新日期:1996-12-15 00:00:00

  • Repression of p53-mediated transcription by MDM2: a dual mechanism.

    abstract::The oncoprotein MDM2 binds to the activation domain of the tumor suppressor p53 and inhibits its ability to stimulate transcription. This same region of p53 is able to bind several basal transcription factors that appear to be important for the transactivation function of p53. It has therefore been suggested that MDM2...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.11.15.1974

    authors: Thut CJ,Goodrich JA,Tjian R

    更新日期:1997-08-01 00:00:00

  • Targeting Argonaute to chromatin.

    abstract::In many eukaryotes, siRNAs bound to Argonaute proteins guide chromatin-modifying enzymes to complementary loci, resulting in transcriptional gene silencing. Multiple lines of evidence indicate that siRNAs base-pair with longer RNAs produced at target loci, but the possibility that siRNAs base-pair directly with DNA re...

    journal_title:Genes & development

    pub_type: 评论,杂志文章

    doi:10.1101/gad.294900.116

    authors: Wendte JM,Pikaard CS

    更新日期:2016-12-15 00:00:00

  • A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway.

    abstract::Binding of microRNA (miRNA) to mRNA within the RNA-induced silencing complex (RISC) leads to either translational inhibition or to destruction of the target mRNA. Both of these functions are executed by Argonaute 2 (Ago2). Using hematopoiesis in mice as a model system to study the physiological function of Ago2 in viv...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.1565607

    authors: O'Carroll D,Mecklenbrauker I,Das PP,Santana A,Koenig U,Enright AJ,Miska EA,Tarakhovsky A

    更新日期:2007-08-15 00:00:00

  • Compound mutants for the paralogous hoxa-4, hoxb-4, and hoxd-4 genes show more complete homeotic transformations and a dose-dependent increase in the number of vertebrae transformed.

    abstract::The Hox gene products are transcription factors involved in specifying regional identity along the anteroposterior body axis. In the mouse, several single mutants for Hox genes show variably penetrant, partial homeotic transformations of vertebrae at their anterior limits of expression, suggesting that compound Hox mu...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.9.13.1667

    authors: Horan GS,Ramírez-Solis R,Featherstone MS,Wolgemuth DJ,Bradley A,Behringer RR

    更新日期:1995-07-01 00:00:00

  • Molecular mechanisms of Spemann's organizer formation: conserved growth factor synergy between Xenopus and mouse.

    abstract::Mesoderm induction assays in Xenopus have implicated growth factors such as activin, Vg1, Xwnt-8, and noggin as important in directing the formation of dorsal mesoderm (Spemann's organizer). Because these growth factors are structurally very different, they presumably act through distinct cell surface receptors that i...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.9.24.3038

    authors: Watabe T,Kim S,Candia A,Rothbächer U,Hashimoto C,Inoue K,Cho KW

    更新日期:1995-12-15 00:00:00

  • Stimulation of transcription by an Ultrabithorax protein in vitro.

    abstract::The Ultrabithorax (Ubx) gene of Drosophila melanogaster encodes a family of UBX proteins that are thought to specify the developmental fates of segments in the posterior thorax and anterior abdomen by controlling the expression of a set of target genes. UBX proteins bind DNA in vitro, and they activate or repress diff...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.4.6.1044

    authors: Johnson FB,Krasnow MA

    更新日期:1990-06-01 00:00:00

  • mRNA-type introns in U6 small nuclear RNA genes: implications for the catalysis in pre-mRNA splicing.

    abstract::U6 small nuclear RNA is one of the spliceosomal RNAs involved in pre-mRNA splicing. In the fission yeast Schizosaccharomyces pombe, the U6 RNA gene was found to have an intron similar to a nuclear pre-mRNA intron, and it was proposed that the U6 intron might be inserted erroneously during pre-mRNA splicing. Using the ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.5.6.1022

    authors: Tani T,Ohshima Y

    更新日期:1991-06-01 00:00:00

  • A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation.

    abstract::P-element transformants of a single rRNA gene (rDNA) were used to investigate the relationship between the organization of the nucleolus organizer (NO) and rDNA function in Drosophila melanogaster. In situ hybridization to rRNA in polytene nuclei of salivary glands demonstrated that an rRNA gene can be transcribed at ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.2.12b.1745

    authors: Karpen GH,Schaefer JE,Laird CD

    更新日期:1988-12-01 00:00:00

  • Sexual dimorphism in diverse metazoans is regulated by a novel class of intertwined zinc fingers.

    abstract::Sex determination is regulated by diverse pathways. Although upstream signals vary, a cysteine-rich DNA-binding domain (the DM motif) is conserved within downstream transcription factors of Drosophila melanogaster (Doublesex) and Caenorhabditis elegans (MAB-3). Vertebrate DM genes have likewise been identified and, re...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:

    authors: Zhu L,Wilken J,Phillips NB,Narendra U,Chan G,Stratton SM,Kent SB,Weiss MA

    更新日期:2000-07-15 00:00:00

  • AMP-activated protein kinase: an energy sensor that regulates all aspects of cell function.

    abstract::AMP-activated protein kinase (AMPK) is a sensor of energy status that maintains cellular energy homeostasis. It arose very early during eukaryotic evolution, and its ancestral role may have been in the response to starvation. Recent work shows that the kinase is activated by increases not only in AMP, but also in ADP....

    journal_title:Genes & development

    pub_type: 杂志文章,评审

    doi:10.1101/gad.17420111

    authors: Hardie DG

    更新日期:2011-09-15 00:00:00

  • Novel role for a bacterial nucleoid protein in translation of mRNAs with suboptimal ribosome-binding sites.

    abstract::In Escherichia coli, the major nucleoid protein H-NS limits transcription by acting as a repressor or transcriptional silencer, presumably by its ability to close the looped chromosome domains in the nucleoid through DNA-protein-DNA bridging. Here, we demonstrate the direct involvement of H-NS as a positive factor sti...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.576310

    authors: Park HS,Ostberg Y,Johansson J,Wagner EG,Uhlin BE

    更新日期:2010-07-01 00:00:00

  • Mismatch repair-dependent processing of methylation damage gives rise to persistent single-stranded gaps in newly replicated DNA.

    abstract::O(6)-Methylguanine ((Me)G) is a highly cytotoxic DNA modification generated by S(N)1-type methylating agents. Despite numerous studies implicating DNA replication, mismatch repair (MMR), and homologous recombination (HR) in (Me)G toxicity, its mode of action has remained elusive. We studied the molecular transactions ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.455407

    authors: Mojas N,Lopes M,Jiricny J

    更新日期:2007-12-15 00:00:00

  • Nitric oxide directly regulates gene expression during Drosophila development: need some gas to drive into metamorphosis?

    abstract::Nitric oxide (NO) is an important second messenger involved in numerous biological processes, but how it regulates gene expression is not well understood. In this issue of Genes & Development, Cáceres and colleagues (pp. 1476-1485) report a critical requirement of NO as a direct regulator of gene expression through it...

    journal_title:Genes & development

    pub_type: 评论,杂志文章

    doi:10.1101/gad.2080411

    authors: Yamanaka N,O'Connor MB

    更新日期:2011-07-15 00:00:00

  • Loss of Topoisomerase I leads to R-loop-mediated transcriptional blocks during ribosomal RNA synthesis.

    abstract::Pre-rRNA transcription by RNA Polymerase I (Pol I) is very robust on active rDNA repeats. Loss of yeast Topoisomerase I (Top1) generated truncated pre-rRNA fragments, which were stabilized in strains lacking TRAMP (Trf4/Trf5-Air1/Air2-Mtr4 polyadenylation complexes) or exosome degradation activities. Loss of both Top1...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.573310

    authors: El Hage A,French SL,Beyer AL,Tollervey D

    更新日期:2010-07-15 00:00:00

  • The splicing regulator Rbfox2 is required for both cerebellar development and mature motor function.

    abstract::The Rbfox proteins (Rbfox1, Rbfox2, and Rbfox3) regulate the alternative splicing of many important neuronal transcripts and have been implicated in a variety of neurological disorders. However, their roles in brain development and function are not well understood, in part due to redundancy in their activities. Here w...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.182477.111

    authors: Gehman LT,Meera P,Stoilov P,Shiue L,O'Brien JE,Meisler MH,Ares M Jr,Otis TS,Black DL

    更新日期:2012-03-01 00:00:00

  • The fasciated ear2 gene encodes a leucine-rich repeat receptor-like protein that regulates shoot meristem proliferation in maize.

    abstract::The ability to initiate organs throughout the lifecycle is a unique feature of plant development that is executed by groups of stem cells called meristems. The balance between stem cell proliferation and organ initiation is carefully regulated and ensures that organs can be initiated in regular geometric patterns. To ...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.208501

    authors: Taguchi-Shiobara F,Yuan Z,Hake S,Jackson D

    更新日期:2001-10-15 00:00:00

  • Histone chaperone ASF1 cooperates with the Brahma chromatin-remodelling machinery.

    abstract::De novo chromatin assembly into regularly spaced nucleosomal arrays is essential for eukaryotic genome maintenance and inheritance. The Anti-Silencing Function 1 protein (ASF1) has been shown to be a histone chaperone, participating in DNA-replication-coupled nucleosome assembly. We show that mutations in the Drosophi...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.231202

    authors: Moshkin YM,Armstrong JA,Maeda RK,Tamkun JW,Verrijzer P,Kennison JA,Karch F

    更新日期:2002-10-15 00:00:00

  • The Elongin BC complex interacts with the conserved SOCS-box motif present in members of the SOCS, ras, WD-40 repeat, and ankyrin repeat families.

    abstract::The Elongin BC complex was identified initially as a positive regulator of RNA polymerase II (Pol II) elongation factor Elongin A and subsequently as a component of the multiprotein von Hippel-Lindau (VHL) tumor suppressor complex, in which it participates in both tumor suppression and negative regulation of hypoxia-i...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.12.24.3872

    authors: Kamura T,Sato S,Haque D,Liu L,Kaelin WG Jr,Conaway RC,Conaway JW

    更新日期:1998-12-15 00:00:00

  • Sequence-specific DNA binding of the B-cell-specific coactivator OCA-B.

    abstract::B-cell-specific transcription of immunoglobulin genes is mediated by the interaction of a POU domain containing transcription factor Oct-1 or Oct-2, with the B-cell-specific coactivator OCA-B (Bob-1, OBF-1) and a prototype octamer element. We find that OCA-B binds DNA directly in the major groove between the two subdo...

    journal_title:Genes & development

    pub_type: 杂志文章

    doi:10.1101/gad.10.16.2079

    authors: Cepek KL,Chasman DI,Sharp PA

    更新日期:1996-08-15 00:00:00