On a general model structure for macroscopic biological reaction rates.

Abstract:

:Macroscopic modelling of bioprocesses requires the determination of a biological reaction scheme and a kinetic model. The a priori selection of an appropriate kinetic model structure is usually made difficult by the lack of detailed bioprocess knowledge and the profusion of apparently similar biological kinetic laws. Moreover, parameter identification is made arduous and time-consuming by the strong non-linearities involved in kinetic laws. In most cases, these kinetic structures are non-linearizable and no first parameter estimation can be deduced easily. In order to avoid such identification problems, Bogaerts et al. [Bogaerts, Ph., Castillo, J., Hanus, R., 1999. A general mathematical modelling technique for bioprocesses in engineering applications. Syst. Anal. Model. Simul. 35, 87-113] have developed a general linearizable kinetic structure which allows the representation of activation and/or inhibition effects of each component in the culture. This paper further generalizes this structure in order to improve the way saturation effects are taken into account, and in turn, improve the biological interpretation of the model parameters. The main advantage of the proposed structure lies in an associated systematic estimation procedure. The usefulness of the proposed model is tested with simulated as well as with experimental data.

journal_name

J Biotechnol

journal_title

Journal of biotechnology

authors

Grosfils A,Vande Wouwer A,Bogaerts P

doi

10.1016/j.jbiotec.2007.04.006

subject

Has Abstract

pub_date

2007-06-30 00:00:00

pages

253-64

issue

3

eissn

0168-1656

issn

1873-4863

pii

S0168-1656(07)00270-2

journal_volume

130

pub_type

杂志文章
  • Characterization of the promoter and upstream activating sequence from the Pseudomonas alcaligenes lipase gene.

    abstract::Pseudomonas alcaligenes secretes a lipase with a high pH optimum, which has interesting properties for application in detergents. The expression of the lipase is strongly dependent on the presence of lipids in the growth medium such as soybean oil. The promoter of the gene was characterized and found to have resemblan...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(00)00397-7

    authors: Cox M,Gerritse G,Dankmeyer L,Quax WJ

    更新日期:2001-03-09 00:00:00

  • Stability of alpha-amylase immobilized on poly(methyl methacrylate-acrylic acid) microspheres.

    abstract::Poly(methyl methacrylate-acrylic acid) microspheres were prepared and the acid groups were activated by using either carbodiimide (CDI) or thionyl chloride (SOCl2). alpha-Amylase was covalently bound on these activated microspheres. The properties of the immobilized enzyme were investigated and compared with those of ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(97)00179-x

    authors: Aksoy S,Tumturk H,Hasirci N

    更新日期:1998-02-05 00:00:00

  • Validation of an optical sensor-based high-throughput bioreactor system for mammalian cell culture.

    abstract::Cell culture optimization is a labor-intensive process requiring a large number of experiments to be conducted under varying conditions. Here we describe a high-throughput bioreactor system that allows 12 mini stirred-tank bioreactors to be operated simultaneously. All bioreactors are monitored by low-cost minimally i...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2005.12.009

    authors: Ge X,Hanson M,Shen H,Kostov Y,Brorson KA,Frey DD,Moreira AR,Rao G

    更新日期:2006-04-10 00:00:00

  • Aptamer-nanobody based ELASA for specific detection of Acinetobacter baumannii isolates.

    abstract::Acinetobacter baumannii has turned into an important threat in nosocomial outbreak infections and multidrug resistance leading to high mortality rates in the 21st century. In recent years its mortality has increased by 15% which in part could be due to lack of a rapid and sensitive diagnostic test. In this work we int...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2016.05.024

    authors: Rasoulinejad S,Gargari SLM

    更新日期:2016-08-10 00:00:00

  • A three-step strategy for targeting drug carriers to human ovarian carcinoma cells in vitro.

    abstract::To improve tumor-to-tissue ratios of anticancer agents in radioimmunotherapy, a three-step targeting approach was used to deliver biotinylated liposomes to human ovarian cancer cells (NIH:OVCAR-3, SK-OV-3) in vitro. Targeting was based upon the use of two antibodies specific for the CA-125 antigen that is highly expre...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(01)00424-2

    authors: Xiao Z,McQuarrie SA,Suresh MR,Mercer JR,Gupta S,Miller GG

    更新日期:2002-03-28 00:00:00

  • Serum-free production of rVSV-ZEBOV in Vero cells: Microcarrier bioreactor versus scale-X™ hydro fixed-bed.

    abstract::Ebola virus disease outbreaks have repeatedly occurred on the African continent over the last decades, with more serious outbreaks in recent years. Being highly transmissible and associated to high fatality rates, it constitutes a serious threat to public health. Vaccination, however, may allow for efficient control o...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2020.01.015

    authors: Kiesslich S,Vila-Chã Losa JP,Gélinas JF,Kamen AA

    更新日期:2020-02-20 00:00:00

  • Characterization of the arabinoxylan-degrading machinery of the thermophilic bacterium Herbinix hemicellulosilytica-Six new xylanases, three arabinofuranosidases and one xylosidase.

    abstract::Herbinix hemicellulosilytica is a newly isolated, gram-positive, anaerobic bacterium with extensive hemicellulose-degrading capabilities obtained from a thermophilic biogas reactor. In order to exploit its potential as a source for new industrial arabinoxylan-degrading enzymes, six new thermophilic xylanases, four fro...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2017.04.023

    authors: Mechelke M,Koeck DE,Broeker J,Roessler B,Krabichler F,Schwarz WH,Zverlov VV,Liebl W

    更新日期:2017-09-10 00:00:00

  • Complete genome sequence of the methanogenic neotype strain Methanobacterium formicicum MF(T.).

    abstract::The neotype strain Methanobacterium formicicum MF(T) (DSM1535), a hydrogenotrophic methanogenic Archaeon, was isolated from a domestic sewage sludge digestor in Urbana (IL, USA). Here, the complete genome sequence of the methanogen is reported. The genome is 2,478,074bp in size, featuring a GC content of 41.23%. M. fo...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2014.09.018

    authors: Maus I,Stantscheff R,Wibberg D,Stolze Y,Winkler A,Pühler A,König H,Schlüter A

    更新日期:2014-12-20 00:00:00

  • High level expression of proteins using sequences from the ferritin heavy chain gene locus.

    abstract::An expression vector has been generated using a gene highly expressed under conditions found in a typical fed-batch bioreactor process. The ferritin heavy chain (HC) gene exhibits higher levels of expression in the late stages of a fed-batch bioreactor than in the early stages. This property was considered advantageou...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2006.09.021

    authors: Prentice HL,Tonkin CJ,Caamano L,Sisk WP

    更新日期:2007-01-30 00:00:00

  • Enrichment of Plasticicumulans acidivorans at pilot-scale for PHA production on industrial wastewater.

    abstract::A PHA producing microbial culture dominated by Plasticicumulans acidivorans was enriched in a pilot plant using fermented wastewater from the Mars candy bar factory. The pilot plant comprised (1) anaerobic fermentation, (2) enrichment of a PHA-producing microbial community and (3) accumulation for maximization of the ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2014.10.022

    authors: Tamisa J,Lužkov K,Jiang Y,van Loosdrecht MC,Kleerebezem R

    更新日期:2014-12-20 00:00:00

  • Random amplified polymorphic DNA analysis of genetically modified organisms.

    abstract::Randomly amplified polymorphic DNA (RAPD) was used to analyzed 78 samples comprises of certified reference materials (soya and maize powder), raw seeds (soybean and maize), processed food and animal feed. Combination assay of two arbitrary primers in the RAPD analysis enable to distinguish genetically modified organis...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2006.06.001

    authors: Yoke-Kqueen C,Radu S

    更新日期:2006-12-15 00:00:00

  • MinION as part of a biomedical rapidly deployable laboratory.

    abstract::Fast turnaround times are of utmost importance for biomedical reconnaissance, particularly regarding dangerous pathogens. Recent advances in sequencing technology and its devices allow sequencing within a short time frame outside stationary laboratories close to the epicenter of the outbreak. In our study, we evaluate...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2016.12.006

    authors: Walter MC,Zwirglmaier K,Vette P,Holowachuk SA,Stoecker K,Genzel GH,Antwerpen MH

    更新日期:2017-05-20 00:00:00

  • High performance flow injection analysis of recombinant protein G.

    abstract::Chromatographic discs were investigated for their potential to substitute for the hitherto used cartridges in heterogeneous flow injection analysis. Originally designed for fast high performance liquid chromatography (HPLC) of biopolymers, the discs combine reliability with speed and resolution. This together with the...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(98)00181-3

    authors: Hagedorn J,Kasper C,Freitag R,Tennikova T

    更新日期:1999-03-26 00:00:00

  • New magnetic nanoparticles for biotechnology.

    abstract::Paramagnetic carriers, which are linked to antibodies enable highly specific biological cell separations. With the colloidal synthesis of superparamagnetic Co and FeCo nanocrystals with superior magnetic moments the question about their potential to replace magnetite as the magnetically responsive component of magneti...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2004.04.019

    authors: Hütten A,Sudfeld D,Ennen I,Reiss G,Hachmann W,Heinzmann U,Wojczykowski K,Jutzi P,Saikaly W,Thomas G

    更新日期:2004-08-26 00:00:00

  • Analysis and optimization of triacylglycerol synthesis in novel oleaginous Rhodococcus and Streptomyces strains isolated from desert soil.

    abstract::As oleaginous microorganisms represent an upcoming novel feedstock for the biotechnological production of lipids or lipid-derived biofuels, we searched for novel, lipid-producing strains in desert soil. This was encouraged by the hypothesis that neutral lipids represent an ideal storage compound, especially under arid...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2016.03.040

    authors: Röttig A,Hauschild P,Madkour MH,Al-Ansari AM,Almakishah NH,Steinbüchel A

    更新日期:2016-05-10 00:00:00

  • Metabolic flux screening of Saccharomyces cerevisiae single knockout strains on glucose and galactose supports elucidation of gene function.

    abstract::New methods for an extended physiological characterization of yeast at a microtiter plate scale were applied to 27 deletion mutants of Saccharomyces cerevisiae cultivated on glucose and galactose as sole carbon sources. In this way, specific growth rates, specific rates of glucose consumption and ethanol production we...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2007.08.043

    authors: Velagapudi VR,Wittmann C,Schneider K,Heinzle E

    更新日期:2007-12-01 00:00:00

  • Efficient glutathione production in metabolically engineered Escherichia coli strains using constitutive promoters.

    abstract::Glutathione (GSH) is an important bioactive tripeptide and widely used in food, medicine and other industries. Recently, the bifunctional glutathione synthetase, GshF, has been applied for efficient GSH production under inducible promoter. In this study, the constitutive expression of GshF from Streptococcus sanguinis...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2018.11.001

    authors: Cui X,Wan J,Zhang X,Wu H,Li Z,Ye Q

    更新日期:2019-01-10 00:00:00

  • Heterologous expression, purification and characterisation of the extracellular domain of trypanosome invariant surface glycoprotein ISG75.

    abstract::The invariant surface glycoprotein ISG75 is a transmembrane glycoprotein occurring on the surface of the bloodstream-form Trypanozoon. This study describes the expression and purification of the N-terminal extracellular domain of ISG75, a novel target for development of diagnostic tests for trypanosomosis. To facilita...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2008.04.012

    authors: Tran T,Büscher P,Vandenbussche G,Wyns L,Messens J,De Greve H

    更新日期:2008-06-30 00:00:00

  • Replacement of an amino acid residue of cyclodextrin glucanotransferase of Bacillus ohbensis doubles the production of gamma-cyclodextrin.

    abstract::Cyclodextrin glucanotransferase (CGTase; EC 2.4.1.19) produces cyclodextrin (CD) from starch through an intramolecular transglucosylation reaction. To obtain a better understanding of the amylolytic and cyclization mechanisms of CGTase, and furthermore to improve the production of gamma-CD, mutant CGTases were constru...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(94)90214-3

    authors: Sin KA,Nakamura A,Masaki H,Matsuura Y,Uozumi T

    更新日期:1994-02-28 00:00:00

  • D-xylose detection in Escherichia coli by a xylose binding protein-dependent response.

    abstract::A gene circuit for the controlled expression of a marker gene and for the assay of xylose concentration in Escherichia coli has been designed and tested. The xylF coding sequence for the xylose binding protein (XBP) was cloned in pT7T318U downstream from the promoter for xylanase A from B. subtilis (Pbsu), together wi...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2013.10.019

    authors: Ribeiro LF,Bressan F,Furtado GP,Meireles F,Ward RJ

    更新日期:2013-12-01 00:00:00

  • Biocatalytic preparation of acylated derivatives of flavonoid glycosides enhances their antioxidant and antimicrobial activity.

    abstract::Enzymatic synthesis of acylated derivatives of a monosaccharidic flavonoid chrysoeriol-7-O-beta-D-(3''-E-p-coumaroyl)-glucopyranoside as well as of a disaccharidic flavonoid chrysoeriol-7-[6'''-O-acetyl-beta-D-allosyl-(1-->2)-beta-D-glucopyranoside], isolated from Greek endemic plants, was performed using an immobiliz...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2004.12.002

    authors: Mellou F,Lazari D,Skaltsa H,Tselepis AD,Kolisis FN,Stamatis H

    更新日期:2005-03-30 00:00:00

  • Measurement of hydrophobic interactions of mammalian cells grown in culture.

    abstract::An assay was developed to measure the hydrophobic interactions of commonly used mammalian cell lines grown in culture. The assay depends on the loss of cells from an aqueous suspension following vortexing with a hydrophobic oil phase. This allowed the determination of a hydrophobicity index, which was significantly hi...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(01)00440-0

    authors: Ghebeh H,Gillis J,Butler M

    更新日期:2002-04-25 00:00:00

  • Enzyme-responsive artificial chaperone system with amphiphilic amylose primer.

    abstract::An enzyme-responsive artificial chaperone system which employs an amphiphilic amylose primer (dodecyl maltopentaose, C12-MP) as a surfactant and phosphorylase b was designed to enable protein refolding. Effective refolding of carbonic anhydrase B after both heat denaturation (70 degrees C for 10min) and guanidine hydr...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2009.01.013

    authors: Morimoto N,Ogino N,Narita T,Akiyoshi K

    更新日期:2009-03-25 00:00:00

  • Fluorescence resonance energy transfer studies of U-shaped DNA molecules.

    abstract::Fluorescence resonance energy transfer studies allow to determine global shape properties of nucleic acids and nucleoprotein complexes. In many DNA-protein complexes, the DNA is more or less bent and the degree of bending can be obtained by FRET. For example, the DNA in complex with the integration host factor (IHF) i...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s1389-0352(01)00038-1

    authors: Lorenz M,Hillisch A,Diekmann S

    更新日期:2002-01-01 00:00:00

  • Amperometric immunosensor based on toluidine blue/nano-Au through electrostatic interaction for determination of carcinoembryonic antigen.

    abstract::A new current amplified immunosensor for the determination of carcinoembryonic antigen (CEA) was demonstrated in this work. The electrode architecture was fabricated by positively charged toluidine blue (TB) coated on negatively charged poly-sulfanilic acid (PSAA) modified glassy carbon electrode (GCE) surface through...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2005.11.023

    authors: Li X,Yuan R,Chai Y,Zhang L,Zhuo Y,Zhang Y

    更新日期:2006-05-29 00:00:00

  • Test system for evaluating the influence of polymer properties on primary human keratinocytes and fibroblasts in mono- and coculture.

    abstract::Interactions of cells with polymer-based biomaterials are influenced by properties of the substrate. Polymers, which are able to induce cell specific effects, gain increasing importance for biotechnology and regenerative therapies. A test system was developed, which allows studying primary human keratinocytes and fibr...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2013.04.012

    authors: Trescher K,Roch T,Cui J,Kratz K,Lendlein A,Jung F

    更新日期:2013-06-20 00:00:00

  • Simultaneous biosynthesis of (+)-geodin by a lovastatin-producing fungus Aspergillus terreus.

    abstract::The simultaneous biosynthesis of lovastatin (mevinolinic acid) and (+)-geodin by Aspergillus terreus ATCC 20542 with regard to the medium composition, i.e. the concentrations of carbon and nitrogen source, was described in this paper. A. terreus is a lovastatin producer but the formation of lovastatin was accompanied ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2007.07.493

    authors: Bizukojc M,Ledakowicz S

    更新日期:2007-12-01 00:00:00

  • Structures of almond hydroxynitrile lyase isoenzyme 5 provide a rationale for the lack of oxidoreductase activity in flavin dependent HNLs.

    abstract::Hydroxynitrile lyases (HNLs) catalyze the asymmetric addition of HCN to aldehydes producing enantiomerically pure cyanohydrins. These enzymes can be heterologously expressed in large quantities making them interesting candidates for industrial applications. The HNLs from Rosaceae evolved from flavin dependent dehydrog...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jbiotec.2016.04.013

    authors: Pavkov-Keller T,Bakhuis J,Steinkellner G,Jolink F,Keijmel E,Birner-Gruenberger R,Gruber K

    更新日期:2016-10-10 00:00:00

  • Hydroperoxide-lyase activity in mint leaves. Volatile C6-aldehyde production from hydroperoxy-fatty acids.

    abstract::The extraction of 13-hydroperoxide-lyase activity from mint leaves as well as its use for C6-aldehyde production was studied in this work. The enzyme cleaves 13(S)-hydroperoxy-C18 fatty acids into C6-aldehyde and C12-oxo-acid. Two mint species were tested: Mentha veridis and Mentha pulegium. The headspace injection me...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2004.03.005

    authors: Gargouri M,Drouet P,Legoy MD

    更新日期:2004-07-01 00:00:00

  • Targeted delivery of calreticulin to ED-A fibronectin leads to tumor-growth retardation.

    abstract::We report the design and characterization of novel fusion proteins, consisting of the F8 antibody and of murine calreticulin (Calr). The F8 antibody recognizes the alternatively-spliced ED-A domain of fibronectin, an extracellular matrix component found in most tumor types, while calreticulin has previously been descr...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2018.12.007

    authors: Ziffels B,Grötsch A,Al-Bayati L,Neri D

    更新日期:2019-01-20 00:00:00