Multiple initiations in the c-myc replication origin independent of chromosomal location.

Abstract:

:At supramolecular resolution, DNA synthesis begins at preferred replication origins in the chromosomes of metazoan cells. To characterize one of these origins in detail, the initiation of replication was examined in the HeLa c-myc origin. Polymerase chain reaction (PCR) amplification of size-fractionated nascent chromosomal DNAs revealed multiple replication initiation sites over a 12-kb region spanning the c-myc origin, including the transcribed region and the 5' and 3' flanking DNA of the gene. Two of the start sites for chromosomal replication occurred inside a 2.4-kb region of the origin that exhibits autonomously replicating sequence (ARS) activity. When a plasmid containing the 2.4-kb ARS region was transfected into HeLa cells, PCR mapping of nascent plasmid DNA confirmed that the plasmid replicated semiconservatively and autonomously and that replication did not initiate at random sites but rather began at multiple sites in a limited zone overlapping the c-myc DNA insert. Within the resolution of the PCR assay, the same sites that were used in the chromosomal c-myc origin were used in the 2.4-kb ARS fragment. The locations of replication start sites determined by PCR are considered in the context of other functional and structural elements of the c-myc origin.

journal_name

DNA Cell Biol

journal_title

DNA and cell biology

authors

Trivedi A,Waltz SE,Kamath S,Leffak M

doi

10.1089/dna.1998.17.885

subject

Has Abstract

pub_date

1998-10-01 00:00:00

pages

885-96

issue

10

eissn

1044-5498

issn

1557-7430

journal_volume

17

pub_type

杂志文章
  • Expression Analysis and Regulation Network Identification of the CONSTANS-Like Gene Family in Moso Bamboo (Phyllostachys edulis) Under Photoperiod Treatments.

    abstract::CONSTANS (CO)/CONSTANS-like (COL) genes that have been studied in annual model plants such as Arabidopsis thaliana and Oryza sativa play key roles in the photoperiodic flowering pathway. Moso bamboo is a perennial plant characterized by a long vegetative stage and flowers synchronously followed by widespread death. Ho...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4611

    authors: Liu J,Cheng Z,Li X,Xie L,Bai Y,Peng L,Li J,Gao J

    更新日期:2019-07-01 00:00:00

  • Regulation of N-acetylgalactosamine 4-sulfatase expression in retrovirus-transduced feline mucopolysaccharidosis type VI muscle cells.

    abstract::As a preliminary step toward muscle-mediated gene therapy in the mucopolysaccharidosis (MPS) type VI cat, we have analyzed the transcriptional regulation of feline N-acetylgalactosamine 4-sulfatase (f4S) gene expression from various retroviral constructs in primary cultures of muscle cells. Two retroviral constructs w...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454999315402

    authors: Yogalingam G,Muller V,Hopwood JJ,Anson DS

    更新日期:1999-03-01 00:00:00

  • Investigation of serotonin transporter gene promoter (5-HTTLPR) and intron 2 (variable number of tandem repeats) polymorphisms with suicidal behavior in a Turkish population.

    abstract::The serotonin (5-hydroxytryptamine) transporter (5HTt) gene has been reported to be associated with suicidal behavior. In this study, we have investigated the 5' promoter region (i.e., 5HTt gene-linked polymorphic region [5-HTTLPR]) and a 17-base pair variable number of tandem repeats polymorphism in the 5HTt gene for...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2010.1031

    authors: Akar T,Sayin A,Bakkaloğlu Z,Cabuk DK,Küçükyildirim S,Demirel B,Candansayar S,Ozsoy ED,Mergen H

    更新日期:2010-08-01 00:00:00

  • Molecular cloning and baculovirus expression of the rabbit corneal aldehyde dehydrogenase (ALDH1A1) cDNA.

    abstract::Most mammalian species express high concentrations of ALDH3A1 in corneal epithelium with the exception of the rabbit, which expresses high amounts of ALDH1A1 rather than ALDH3A1. Several hypotheses that involve catalytic and/or structural functions have been postulated regarding the role of these corneal ALDHs. The ai...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454903322216671

    authors: Manzer R,Qamar L,Estey T,Pappa A,Petersen DR,Vasiliou V

    更新日期:2003-05-01 00:00:00

  • Chicken ovalbumin upstream promoter-transcription factor, hepatocyte nuclear factor 3, and CCAAT/enhancer binding protein control the far-upstream enhancer of the rat alpha-fetoprotein gene.

    abstract::We have further characterized the most distal of the three alpha-fetoprotein (AFP) enhancers required for expression of the AFP gene in fetal hepatocytes and yolk sac endodermal cells. Almost total rat AFP enhancer 3 (E3) activity is driven by a 160-bp fragment at -6 kb containing three target regions for nuclear prot...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1996.15.1063

    authors: Thomassin H,Bois-Joyeux B,Delille R,Ikonomova R,Danan JL

    更新日期:1996-12-01 00:00:00

  • Gene set enrichment analysis reveals several globally affected pathways due to SKI-1/S1P inhibition in HepG2 cells.

    abstract::Sterol regulatory element-binding proteins (SREBPs) are transcription factors governing transcription of genes related to cholesterol and fatty acid metabolism. To become active, SREBPs must undergo a proteolytic cleavage to allow an active NH(2)-terminal segment to translocate into the nucleus. SKI-1/S1P is the first...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2007.0624

    authors: De Windt A,Rai M,Bernier L,Thelen K,Soini J,Lefebvre C,Chintawar S,Lavigne J,Saarinen L,Kytömäki L,Munzer JS,Lütjohann D,Pandolfo M,Davignon J,Seidah NG,Laaksonen R

    更新日期:2007-11-01 00:00:00

  • Satellite-tagged transcribing sequences in Bubalus bubalis genome undergo programmed modulation in meiocytes: possible implications for transcriptional inactivation.

    abstract::We cloned and sequenced a 1378 bp BamHI satellite DNA fraction from the water buffalo Bubalus bubalis and have studied its expression in different tissues. The GC-rich sequences of the resultant contig pDS5 crosshybridize only with bovid DNA and are not conserved evolutionarily. Typing of buffalo genomic DNA using pDS...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454901317095007

    authors: Chattopadhyay M,Gangadharan S,Kapur V,Azfer MA,Prakash B,Ali S

    更新日期:2001-09-01 00:00:00

  • Characterization of murine middle repetitive DNA.

    abstract::We have characterized four sequences from a small library containing a subset of the repetitive families of the mouse. Each clone has a repetition frequency of less than 1,100 copies per genome and each clone represents a unique family of middle repetitive DNA. One clone (pMR111) shares homology with mouse intracister...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1993.12.319

    authors: Adiletta DC,Elliott RW,Woodworth ME

    更新日期:1993-05-01 00:00:00

  • Abnormalities in the T cell receptor Vδ repertoire and Foxp3 expression in refractory anemia with ringed sideroblasts.

    abstract::Immune dysregulation has been implicated in myelodysplastic syndrome (MDS) pathogenesis. Refractory anemia with ringed sideroblasts (RARS) is a low-risk subtype of MDS. Our previous study has reported an abnormal γδ T cell receptor (TCR) repertoire in patients with intermediate or high-risk MDS. To characterize the st...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2015.2925

    authors: Geng S,Weng J,Chen S,Li Y,Wu P,Huang X,Lai P,Du X

    更新日期:2015-09-01 00:00:00

  • Endocytosis of the rat somatostatin receptors: subtype discrimination, ligand specificity, and delineation of carboxy-terminal positive and negative sequence motifs.

    abstract::Endocytosis of the five rat somatostatin receptor subtypes (SSTR1-5) was investigated in transfected HEK cells by biochemical ligand binding assays and confocal microscopic analysis. Phenylarsine oxide-sensitive internalization of SSTR1-3 is dependent on SST-14 or SST-28, whereas only the octacosapeptide triggers this...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.111

    authors: Roth A,Kreienkamp HJ,Nehring RB,Roosterman D,Meyerhof W,Richter D

    更新日期:1997-01-01 00:00:00

  • Downstream sequence adjacent to AUG affects translation of chloramphenicol acetyl transferase in eukaryotic cells.

    abstract::The CAT gene is widely used as a reporter in eukaryotic systems because of the efficient translation of its mRNA. We report here that a sequence occurring in the CAT mRNA at +15 nucleotides from CAT AUG is essential for translation. This sequence includes a stem-loop structure, which, however, exhibits a calculated st...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454900314690

    authors: Ciullo M,Del Pozzo G,Autiero M,Guardiola J

    更新日期:2000-01-01 00:00:00

  • Long Noncoding RNA SNHG16 Promotes Osteosarcoma Cells Migration and Invasion via Sponging miRNA-340.

    abstract::Long noncoding RNA host gene 16 (SNHG16) has a key role in a variety of cancer progression. However, the role and mechanism of SNHG16 in osteosarcoma (OS) remain unknown. In this study, we examined the functional role of SNHG16 in OS cells through knocked-down SNHG16 by using siRNA. We found that SNHG16 is overexpress...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4424

    authors: Su P,Mu S,Wang Z

    更新日期:2019-02-01 00:00:00

  • Synchronous block in DNA synthesis initiation with change in chromatin topology mediated by VP16.

    abstract::The impact of chromatin topology on the DNA synthetic process was studied in the human squamous-cell carcinoma cell line SQ-20B. A 1-h exposure < or = 10 microM VP16 produced an increase in DNA supercoil tension, measured by recording laser light scatter from salt-extracted nuclei. This change was precisely paralleled...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1998.17.613

    authors: Narayana A,Khodarev N,Walter S,Vaughan AT

    更新日期:1998-07-01 00:00:00

  • Interleukin 35 Rescues Regulatory B Cell Function, but the Effect Is Dysregulated in Ulcerative Colitis.

    abstract::Ulcerative colitis (UC) is a long-time inflammatory condition arising from aberrant immune activation in the colon and the rectum. Interleukin (IL)-35 plays critical roles in autoimmune disorders. In this study, we explored the pathways of IL-35 in affecting UC. First, peripheral blood mononuclear cells (PBMCs) from U...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2016.3570

    authors: Wang S,Qin C

    更新日期:2017-05-01 00:00:00

  • Upregulation of Sestrin2 expression protects against macrophage apoptosis induced by oxidized low-density lipoprotein.

    abstract::Sestrin2 is involved in a different cellular response to stress conditions. However, the function of Sestrin2 in the cardiovascular system remains unknown. In the present study, we tested whether Sestrin2 has a beneficial effect on macrophage cell apoptosis induced by oxidized low-density lipoprotein (oxLDL). We found...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2014.2627

    authors: Hu HJ,Shi ZY,Lin XL,Chen SM,Wang QY,Tang SY

    更新日期:2015-04-01 00:00:00

  • Constitutive mdmx expression during cell growth, differentiation, and DNA damage.

    abstract::The mdmx gene was shown to possess high homology to the mdm-2 gene and to encode a protein that can bind p53 and block p53 transactivation. Because Mdm-2 protein blocks the growth-suppressive activity of the p53 tumor-suppressor protein through similar activities, we examined the expression patterns of mdmx to determi...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454999314971

    authors: Jackson MW,Berberich SJ

    更新日期:1999-09-01 00:00:00

  • Molecular cloning of prohormone convertase 1 from the atrial gland of Aplysia.

    abstract::We have screened an Aplysia atrial gland cDNA library using a prohormone convertase (PC)1 probe prepared by polymerase chain reaction (PCR) and have isolated an Aplysia PC1-related full-length 3.6-kb cDNA clone. The cDNA sequence (3,565 bp) encoded a putative preproendoprotease (APC1) of 703 amino acid residues that s...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1996.15.339

    authors: Gorham EL,Nagle GT,Smith JS,Shen H,Kurosky A

    更新日期:1996-04-01 00:00:00

  • Molecular analysis of bovine actin gene and pseudogene sequences: expression of nonmuscle and striated muscle isoforms in adult tissues.

    abstract::Most studies on the tissue distribution of actin isoform transcripts have been done in small mammals such as rat and mouse. We have begun a characterization of the actin gene family in a large mammal, the bovine. The alpha skeletal gene was isolated, and an isoform-specific probe to the 3' untranslated region of the t...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1995.14.555

    authors: Davey HW,Wildeman AG

    更新日期:1995-06-01 00:00:00

  • Expression of human bone morphogenetic proteins-2 or -4 in murine mesenchymal progenitor C3H10T1/2 cells induces differentiation into distinct mesenchymal cell lineages.

    abstract::The cDNAs encoding the human bone morphogenetic proteins BMP-2 and BMP-4 in an eukaryotic expression vector were permanently transferred into the murine mesenchymal progenitor cell line C3H10T1/2. Originally, these cells are known to differentiate into myotubes, adipocytes, and chondrocytes upon the addition of azacyt...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1993.12.871

    authors: Ahrens M,Ankenbauer T,Schröder D,Hollnagel A,Mayer H,Gross G

    更新日期:1993-12-01 00:00:00

  • Increased gene expression of a cytokine-related molecule and profilin after activation of Suberites domuncula cells with xenogeneic sponge molecule(s).

    abstract::Porifera (sponges) constitute the lowest metazoan phylum. Experiments examined whether sponges can recognize self/nonself molecules. Cells from the marine sponge Suberites domuncula were incubated with membranes from either S. domuncula or another marine sponge, Geodia cydonium, as well as with recombinant alpha-integ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454999314746

    authors: Müller WE,Perovic S,Wilkesman J,Kruse M,Müller IM,Batel R

    更新日期:1999-12-01 00:00:00

  • Knockdown of miR-629 Inhibits Ovarian Cancer Malignant Behaviors by Targeting Testis-Specific Y-Like Protein 5.

    abstract::Ovarian cancer (OC) is the most lethal gynecological cancer. The molecular mechanism of it is complicated, and numerous researches suggest that microRNAs are key regulators for it. This study was to investigate the pivotal role of miR-629 in the progression of OC and to reveal the possible molecular mechanism of its a...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2017.3904

    authors: Shao L,Shen Z,Qian H,Zhou S,Chen Y

    更新日期:2017-12-01 00:00:00

  • Association Between Four Polymorphisms in lncRNA and Risk of Lung Cancer in a Chinese Never-Smoking Female Population.

    abstract::Long noncoding RNAs (lncRNAs) play important roles in the development of human cancers. This is the first case-control study of the association between specific polymorphisms in lncRNA genes and the risk of lung cancer, as well as the gene-environment interaction between the polymorphisms and cooking oil fume exposure...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4200

    authors: Gao M,Li H,Lv X,Zhou B,Yin Z

    更新日期:2018-08-01 00:00:00

  • Human dTMP kinase: gene expression and enzymatic activity coinciding with cell cycle progression and cell growth.

    abstract::dTMP kinase (E.C.2.7.4.9.) catalyzes the phosphorylation of dTMP to the corresponding diphosphate. This enzyme is essential for DNA synthesis in vivo and is an important intermediate enzyme in the pathway of many pyrimidine analog drugs. In this report, we describe the isolation of the human dTMP kinase gene by functi...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1994.13.461

    authors: Huang SH,Tang A,Drisco B,Zhang SQ,Seeger R,Li C,Jong A

    更新日期:1994-05-01 00:00:00

  • Mitochondrial Ribosomal Protein L10 Associates with Cyclin B1/Cdk1 Activity and Mitochondrial Function.

    abstract::Mitochondrial ribosomal proteins are important for mitochondrial-encoded protein synthesis and mitochondrial function. In addition to their roles in mitoribosome assembly, several mitochondrial ribosome proteins are also implicated in cellular processes like cell cycle regulation, apoptosis, and mitochondrial homeosta...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2016.3271

    authors: Li HB,Wang RX,Jiang HB,Zhang ED,Tan JQ,Xu HZ,Zhou RR,Xia XB

    更新日期:2016-11-01 00:00:00

  • My life with adeno-associated virus: a long time spent studying a short genome.

    abstract::My 45 years of studying the molecular biology of adeno-associated virus are recounted. Additional activities as a mentor, department chair, and medical school administrator are described, as are my activities in the public sphere, which involved national issues related to science policy and medical education. ...

    journal_title:DNA and cell biology

    pub_type: 传,历史文章,杂志文章

    doi:10.1089/dna.2013.2120

    authors: Berns KI

    更新日期:2013-07-01 00:00:00

  • Biological and Clinical Relevance of microRNAs in Mitochondrial Diseases/Dysfunctions.

    abstract::Mitochondrial dysfunction arises from an inadequate number of mitochondria, an inability to provide necessary substrates to mitochondria, or a dysfunction in their electron transport and a denosine triphosphate synthesis machinery. Occurrences of mitochondrial dysfunction are due to genetic or environmental changes in...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.2019.5013

    authors: Sekar D,Johnson J,Biruntha M,Lakhmanan G,Gurunathan D,Ross K

    更新日期:2020-08-01 00:00:00

  • Aberrant expression pattern of replication-dependent histone h3 subtype genes in human tumor cell lines.

    abstract::We have determined the expression pattern of all 11 human replication-dependent histone H3 genes in three fetal human tissues (bladder, liver, and lung) and in eight human cell lines by RNase protection assay. In the fetal human tissues, all 11 genes were expressed to a varied extent. However, the relative contributio...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454903321908629

    authors: Koessler H,Doenecke D,Albig W

    更新日期:2003-04-01 00:00:00

  • The transcriptional factor Egr-1 is synthesized by baculovirus-infected insect cells in an active, DNA-binding form.

    abstract::The Egr-1 (zfp-6) gene encodes a zinc-finger-containing nuclear protein that is rapidly and transiently induced in quiescent cells treated with mitogens. We have constructed baculovirus vectors that synthesize mouse Egr-1 protein initiating at two putative ATG start sites. The ATG site producing the larger protein (Mr...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1991.10.61

    authors: Ragona G,Edwards SA,Mercola DA,Adamson ED,Calogero A

    更新日期:1991-01-01 00:00:00

  • Molecular analysis of cDNA molecules encoding glutamate receptor subunits, fGluR1 alpha and fGluR1 beta, of Oreochromis sp.

    abstract::In this study, we isolated two cDNA molecules encoding putative glutamate receptor subunits, fGluR1 alpha and fGluR1 beta, from an Oreochromis sp. brain cDNA library by hybridizing with the glutamate receptor cDNA, fGluR2 beta, of the same fish. The deduced amino acid sequence of the fGluR1 alpha consists of 908 resid...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1996.15.717

    authors: Wu YM,Kung SS,Chen J,Chow WY

    更新日期:1996-09-01 00:00:00

  • Association of Long Noncoding RNAs Polymorphisms with the Risk of Esophagogastric Junction Adenocarcinoma: A Three-Center Study of 1063 Cases and 1677 Controls.

    abstract::Increasing evidence suggested that long noncoding RNAs (lncRNAs) variants may be involved in the progression of various cancers. However, the association of the lncRNAs polymorphisms with the risk for esophagogastric junction adenocarcinoma (EGJA) is still unknown. In this case-control study, we selected two cancer-re...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2020.5368

    authors: Cao R,Chen Y,Wang J,Chen M,Chen S,Tang W

    更新日期:2020-05-01 00:00:00