Satellite-tagged transcribing sequences in Bubalus bubalis genome undergo programmed modulation in meiocytes: possible implications for transcriptional inactivation.

Abstract:

:We cloned and sequenced a 1378 bp BamHI satellite DNA fraction from the water buffalo Bubalus bubalis and have studied its expression in different tissues. The GC-rich sequences of the resultant contig pDS5 crosshybridize only with bovid DNA and are not conserved evolutionarily. Typing of buffalo genomic DNA using pDS5 with several restriction enzymes revealed multilocus monomorphic bands. Similar typing of cattle, buffalo, goat, sheep, and gaur genomic DNA revealed variations in copy number and allele length giving rise to species-specific band patterns. Expression study of pDS5 in bubaline samples by RNA slot-blot, Northern blot, and RT-PCR showed various levels of signal in all the somatic tissues and germline cells except heart. A GenBank database search revealed homology of pDS5 sequences in the 5' region from nt 1-1261 with collagen gene. An AluI typing analysis of DNA from bubaline semen samples showed consistent loss of two bands. The presence of corresponding bands in somatic tissues suggests a sequence modulation within the pDS5 array in meiocytes during spermatogenesis, which is restored in the somatic cells after fertilization. Modulation of the satellite-tagged transcribing sequence in the meiocytes may be a mechanism of its inactivation.

journal_name

DNA Cell Biol

journal_title

DNA and cell biology

authors

Chattopadhyay M,Gangadharan S,Kapur V,Azfer MA,Prakash B,Ali S

doi

10.1089/104454901317095007

keywords:

subject

Has Abstract

pub_date

2001-09-01 00:00:00

pages

587-93

issue

9

eissn

1044-5498

issn

1557-7430

journal_volume

20

pub_type

杂志文章
  • HGF Gene Delivering Alginate/Galactosylated Chitosan Sponge Scaffold for Three-Dimensional Coculture of Hepatocytes/3T3 Cells.

    abstract::Gene delivery from tissue engineering scaffold is a novel strategy in regulating long-term growth and function of cells in vitro culture. In this study, a hepatocyte growth factor plasmid/polyetherimide (pHGF/PEI) polyplex delivering alginate (AL)/galactosylated chitosan (GC) (pHGF/PEI-AL/GC) sponge scaffold was prepa...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2019.5136

    authors: Gao C,Yang Y,Zhang Y,Qian M,Yang J

    更新日期:2020-03-01 00:00:00

  • Human Adipose-Derived CD146+ Stem Cells Increase Life Span of a Muscular Dystrophy Mouse Model More Efficiently than Mesenchymal Stromal Cells.

    abstract::Duchenne muscular dystrophy is the most common and severe form of progressive muscular dystrophy. Previous results showed an increased survival in double knockout mice (dko) when treated with adipose-derived CD146+ cells. In this study, we analyzed the effect of CD146+ cells compared to mesenchymal stem/stromal cells ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4158

    authors: Gomes JP,Coatti GC,Valadares MC,Assoni AF,Pelatti MV,Secco M,Zatz M

    更新日期:2018-09-01 00:00:00

  • Use of a two-hybrid system to identify mutations in Max that confer increased affinity for Myc.

    abstract::A yeast two-hybrid system was used to identify mutants of Max that exhibit an increased affinity for Myc. Truncated forms of the Max helix-loop-helix/leucine zipper motif (HLH/Zip) were first expressed in a two- hybrid system in which the bait protein was the HLH/Zip motif of Myc. Deletion of amino acids both amino-te...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.1277

    authors: Wang H,Van Den Bergh F,Spencer E,Wilcox K,Herman T

    更新日期:1997-11-01 00:00:00

  • Activation of SphK1 by K6PC-5 Inhibits Oxygen-Glucose Deprivation/Reoxygenation-Induced Myocardial Cell Death.

    abstract::In the current study, we evaluated the potential effect of a novel sphingosine kinase 1 (SphK1) activator, K6PC-5, on oxygen-glucose deprivation (OGD)/reoxygenation-induced damages to myocardial cells. We demonstrated that K6PC-5 increased intracellular sphingosine-1-phosphate (S1P) content and remarkably inhibited OG...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2015.2959

    authors: Shao JJ,Peng Y,Wang LM,Wang JK,Chen X

    更新日期:2015-11-01 00:00:00

  • Transfection Efficiency Evaluation and Endocytosis Exploration of Different Polymer Condensed Agents.

    abstract::DNA condensed agents can improve the transfection efficiency of the cationic liposome delivery system. However, various condensed agents have distinct transfection efficiency and cellular cytotoxicity. The object of this study was to screen the optimal agents with the high transfection efficiency and low cytotoxicity ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4464

    authors: Wang J,Ye X,Ni H,Zhang J,Ju S,Ding W

    更新日期:2019-10-01 00:00:00

  • Structure of the chum salmon insulin-like growth factor I gene.

    abstract::Insulin-like growth factor I (IGF-I) plays a major role in development and metabolism. Currently, the cDNA-derived primary structure of IGF-I is known for some mammals and for chicken, frog, and salmon. Additionally, the organization of the human, rat, and chicken IGF-I genes has been established. The investigation of...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1993.12.729

    authors: Kavsan VM,Koval AP,Grebenjuk VA,Chan SJ,Steiner DF,Roberts CT Jr,LeRoith D

    更新日期:1993-10-01 00:00:00

  • Effects of Placental Ischemia Are Attenuated by 1,25-Dihydroxyvitamin D Treatment and Associated with Reduced Apoptosis and Increased Autophagy.

    abstract::We evaluated the effects of administration of 1,25-dihydroxyvitamin D (1,25(OH)2D) during pregnancy on relieving adverse outcomes of preeclampsia and the pathologic and biochemical changes in reduction in uteroplacental perfusion (RUPP) model of rats. On day 1, 7, and 14 of pregnancy, rats in pregnant RUPP plus 1,25(O...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2015.2885

    authors: Tian X,Ma S,Wang Y,Hou L,Shi Y,Yao M,Wang X,Zhang H,Jiang L

    更新日期:2016-02-01 00:00:00

  • The Emerging Roles of Long Noncoding RNAs in Bone Homeostasis and Their Potential Application in Bone-Related Diseases.

    abstract::Increasing evidence has announced the emerging roles of long noncoding RNAs (lncRNAs) in modulating bone homeostasis due to their potential regulating effects on bone-related cells' proliferation, migration, differentiation and apoptosis. Thus, lncRNAs have been considered as a promising gene tool to facilitate the bo...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.2020.5391

    authors: Song W,Xie J,Li J,Bao C,Xiao Y

    更新日期:2020-06-01 00:00:00

  • Molecular analysis of bovine actin gene and pseudogene sequences: expression of nonmuscle and striated muscle isoforms in adult tissues.

    abstract::Most studies on the tissue distribution of actin isoform transcripts have been done in small mammals such as rat and mouse. We have begun a characterization of the actin gene family in a large mammal, the bovine. The alpha skeletal gene was isolated, and an isoform-specific probe to the 3' untranslated region of the t...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1995.14.555

    authors: Davey HW,Wildeman AG

    更新日期:1995-06-01 00:00:00

  • Meta-analysis of epidermal growth factor polymorphisms and cancer risk: involving 9,779 cases and 15,932 controls.

    abstract::The epidermal growth factor (EGF) pathway stimulates proliferation and differentiation of epidermal and epithelial tissues, and plays an important role in tumorigenesis. The association between EGF polymorphisms and cancer risk is controversial; thus, we performed this meta-analysis. Overall, 41 case-control studies w...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,meta分析

    doi:10.1089/dna.2011.1394

    authors: Li TF,Ren KW,Liu PF

    更新日期:2012-04-01 00:00:00

  • Expression Analysis and Regulation Network Identification of the CONSTANS-Like Gene Family in Moso Bamboo (Phyllostachys edulis) Under Photoperiod Treatments.

    abstract::CONSTANS (CO)/CONSTANS-like (COL) genes that have been studied in annual model plants such as Arabidopsis thaliana and Oryza sativa play key roles in the photoperiodic flowering pathway. Moso bamboo is a perennial plant characterized by a long vegetative stage and flowers synchronously followed by widespread death. Ho...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2018.4611

    authors: Liu J,Cheng Z,Li X,Xie L,Bai Y,Peng L,Li J,Gao J

    更新日期:2019-07-01 00:00:00

  • Biological variation among african trypanosomes: I. Clonal expression of virulence is not linked to the variant surface glycoprotein or the variant surface glycoprotein gene telomeric expression site.

    abstract::The potential association of variant surface glycoprotein (VSG) gene expression with clonal expression of virulence in African trypanosomes was addressed. Two populations of clonally related trypanosomes, which differ dramatically in virulence for the infected host, but display the same apparent VSG surface coat pheno...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2009.0991

    authors: Inverso JA,Uphoff TS,Johnson SC,Paulnock DM,Mansfield JM

    更新日期:2010-05-01 00:00:00

  • Expression of the proto-oncogene Axl in renal cell carcinoma.

    abstract::In this investigation, we examined the role of the Axl proto-oncogene in renal cell carcinoma (RCC). Axl is a tyrosine kinase receptor implicated in myeloid leukogenesis, and has been found to be overexpressed in lung cancers and breast cancers. Axl has been described to act as a mitogenic factor along with its ligand...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/10445490360708946

    authors: Chung BI,Malkowicz SB,Nguyen TB,Libertino JA,McGarvey TW

    更新日期:2003-08-01 00:00:00

  • Class discovery analysis of the lung cancer gene expression data.

    abstract::Traditional histological classification of lung cancer subtypes is informative, but incomplete. Recent studies of gene expression suggest that molecular classification can be used for effective diagnostic and prediction of the treatment outcome. We attempt to build a molecular classification based on the public data a...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2004.23.715

    authors: Ptitsyn A

    更新日期:2004-10-01 00:00:00

  • No association of Methylenetetrahydrofolate reductase (MTHFR) C677T polymorphism in susceptibility to gallbladder cancer.

    abstract::Gallbladder carcinoma (GBC) is a leading cause of cancer deaths in north India. Evidence has highlighted the role of abnormal DNA methylation patterns on inappropriate gene expression in development and progression of various cancers. 5,10-Methylenetetrahydrofolate reductase (MTHFR) plays a major role in provision of ...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2007.0679

    authors: Srivastava A,Pandey SN,Pandey P,Choudhuri G,Mittal B

    更新日期:2008-03-01 00:00:00

  • Transplacental transfer of a growth hormone-releasing hormone peptide from mother to fetus in the rat.

    abstract::Previous studies showed that when growth hormone-releasing hormone (GHRH) was administered to either pregnant rats or pigs as a plasmid-mediated therapy, pituitary weight, somatotroph and lactotroph numbers, and postnatal growth rate of the offspring increased. To determine if these responses resulted from direct effe...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2006.25.429

    authors: Fiorotto ML,Lopez R,Oliver WT,Khan AS,Draghia-Akli R

    更新日期:2006-08-01 00:00:00

  • Dioxin induces expression of c-fos and c-jun proto-oncogenes and a large increase in transcription factor AP-1.

    abstract::Among environmental pollutants, 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD; dioxin) is one of the most potent tumor promoters and teratogens known. The molecular mechanisms responsible for the biological activity of TCDD, however, remain largely unknown. In this report, we show that the first observable effects of TCDD...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1992.11.269

    authors: Puga A,Nebert DW,Carrier F

    更新日期:1992-05-01 00:00:00

  • Dysregulation of CD4(+) T Cell Subsets in Intracranial Aneurysm.

    abstract::Intracranial aneurysms (IAs) and potential IA rupture are one of the direct causes of permanent brain damage and mortality. Interestingly, the major risk factors of IA development, including hemodynamic stress, hypertension, smoking, and genetic predispositions, are closely associated with a proinflammatory immune sta...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2015.3105

    authors: Zhang HF,Zhao MG,Liang GB,Yu CY,He W,Li ZQ,Gao X

    更新日期:2016-02-01 00:00:00

  • STAT3 association with microtubules and its activation are independent of HDAC6 activity.

    abstract::Signal transducer and activator of transcription 3 (STAT3) is an important oncogenic transcription factor residing in the cytoplasm in the resting cells. Upon stimulation, STAT3 is activated and translocated to the nucleus to regulate target genes. Although the canonical transcriptional function of STAT3 has been inte...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2014.2713

    authors: Yan B,Xie S,Liu Z,Luo Y,Zhou J,Li D,Liu M

    更新日期:2015-04-01 00:00:00

  • Developmental dynamics of a polyhomeotic-EGFP fusion in vivo.

    abstract::Polyhomeotic is a member of the Polycomb group of genes. The products of this group are chromatin-associated proteins that act together as multimeric complexes. These proteins are required for the maintenance of target gene repression in a permanent and heritable manner during development. In order to better understan...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454901316976118

    authors: Netter S,Faucheux M,Théodore L

    更新日期:2001-08-01 00:00:00

  • Investigation of serotonin transporter gene promoter (5-HTTLPR) and intron 2 (variable number of tandem repeats) polymorphisms with suicidal behavior in a Turkish population.

    abstract::The serotonin (5-hydroxytryptamine) transporter (5HTt) gene has been reported to be associated with suicidal behavior. In this study, we have investigated the 5' promoter region (i.e., 5HTt gene-linked polymorphic region [5-HTTLPR]) and a 17-base pair variable number of tandem repeats polymorphism in the 5HTt gene for...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2010.1031

    authors: Akar T,Sayin A,Bakkaloğlu Z,Cabuk DK,Küçükyildirim S,Demirel B,Candansayar S,Ozsoy ED,Mergen H

    更新日期:2010-08-01 00:00:00

  • Molecular cloning and baculovirus expression of the rabbit corneal aldehyde dehydrogenase (ALDH1A1) cDNA.

    abstract::Most mammalian species express high concentrations of ALDH3A1 in corneal epithelium with the exception of the rabbit, which expresses high amounts of ALDH1A1 rather than ALDH3A1. Several hypotheses that involve catalytic and/or structural functions have been postulated regarding the role of these corneal ALDHs. The ai...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/104454903322216671

    authors: Manzer R,Qamar L,Estey T,Pappa A,Petersen DR,Vasiliou V

    更新日期:2003-05-01 00:00:00

  • MicroRNAs in viral replication and pathogenesis.

    abstract::MicroRNAs (miRNAs) are an important class of small, noncoding, regulatory RNAs found to be involved in regulating a wide variety of important cellular processes by the sequence-specific inhibition of gene expression. Viruses have evolved a number of mechanisms to take advantage of the regulatory potential of this high...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/dna.2006.0559

    authors: Dykxhoorn DM

    更新日期:2007-04-01 00:00:00

  • Apoptosis through CD95 (Fas/APO-1), but not a CD40/CD95 chimeric receptor, is inhibited by phorbol-12-myristate-13-acetate.

    abstract::CD95 (Fas/APO-1)-mediated apoptosis appears to be regulated by positive and negative signaling molecules. A human CD40/CD95 chimeric receptor was stably transfected into CD95-expressing human Jurkat T cells, and signaling through native and chimeric CD95 was compared in the same cell type to assess contributions of th...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.197

    authors: Rudert F,Wang Y,Lindridge E,Watson J

    更新日期:1997-02-01 00:00:00

  • Expression and characterization of a novel UDP-glucuronosyltransferase, UGT2B9, from cynomolgus monkey.

    abstract::Uridine diphosphate glucuronosyltransferases (UGTs) are important phase II detoxification enzymes. Despite the expression of UGT proteins in many species, previous results have suggested that simians represent the most appropriate animal model to study the glucuronidation of steroids in extrahepatic steroid target tis...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1997.16.1195

    authors: Bélanger G,Beaulieu M,Lévesque E,Hum DW,Bélanger A

    更新日期:1997-10-01 00:00:00

  • Effects of HIV-1 Vpr on neuroinvasion and neuropathogenesis.

    abstract::Human immunodeficiency virus type I (HIV-1) infection leads to penetration of the central nervous system (CNS) in virtually all infected individuals and HIV-1-induced encephalopathy in a significant number of untreated patients. The molecular mechanisms by which HIV-1 enters the CNS and yields CNS dysfunction are stil...

    journal_title:DNA and cell biology

    pub_type: 杂志文章,评审

    doi:10.1089/104454904773819815

    authors: Pomerantz RJ

    更新日期:2004-04-01 00:00:00

  • Induction of estrogen-sensitive epithelial cells derived from human-induced pluripotent stem cells to repair ovarian function in a chemotherapy-induced mouse model of premature ovarian failure.

    abstract::The incidence of premature ovarian failure (POF), a condition causing amenorrhea and hypergonadotropic hypoestrogenism in women before the age of 40, has been increasing in recent years. As an irreversible pathological change, improved treatment strategies for this disease are urgently needed. In this study, a type of...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2013.2032

    authors: Liu T,Qin W,Huang Y,Zhao Y,Wang J

    更新日期:2013-12-01 00:00:00

  • Characterization of a cDNA encoding rat sterol carrier protein2.

    abstract::Sterol carrier protein2 (SCP2) is a 13.2-kD protein that is thought to be involved in the intracellular transport of cholesterol. Using synthetic oligonucleotides based on the protein sequence of SCP2, a clone (SP43) was isolated from a rat liver cDNA library. The DNA sequence revealed that the cDNA could encode a pol...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.1990.9.159

    authors: Billheimer JT,Strehl LL,Davis GL,Strauss JF 3rd,Davis LG

    更新日期:1990-04-01 00:00:00

  • Age-related macular degeneration and association of CFH Y402H and LOC387715 A69S polymorphisms in a Turkish population.

    abstract::Age-related macular degeneration (AMD) is a disease with multifactorial etiology characterized by irreversible loss of central visual acuity. The discovery of susceptive single-nucleotide polymorphisms (SNPs) has progressed our understanding of AMD. Complement factor H (CFH) gene Y402H polymorphism and high-temperatur...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2011.1214

    authors: Soysal Y,Inan UÜ,Küsbeci T,Imirzalioğlu N

    更新日期:2012-03-01 00:00:00

  • The human AKNA gene expresses multiple transcripts and protein isoforms as a result of alternative promoter usage, splicing, and polyadenylation.

    abstract::We previously showed that the human AKNA gene encodes an AT-hook transcription factor that regulates the expression of costimulatory cell surface molecules on lymphocytes. However, AKNA cDNA probes hybridize with multiple transcripts, suggesting either the existence of other homologous genes or a complex regulation op...

    journal_title:DNA and cell biology

    pub_type: 杂志文章

    doi:10.1089/dna.2005.24.325

    authors: Sims-Mourtada JC,Bruce S,McKeller MR,Rangel R,Guzman-Rojas L,Cain K,Lopez C,Zimonjic DB,Popescu NC,Gordon J,Wilkinson MF,Martinez-Valdez H

    更新日期:2005-05-01 00:00:00