Structural basis for the final steps of human 40S ribosome maturation.

Abstract:

:Eukaryotic ribosomes consist of a small 40S and a large 60S subunit that are assembled in a highly coordinated manner. More than 200 factors ensure correct modification, processing and folding of ribosomal RNA and the timely incorporation of ribosomal proteins1,2. Small subunit maturation ends in the cytosol, when the final rRNA precursor, 18S-E, is cleaved at site 3 by the endonuclease NOB13. Previous structures of human 40S precursors have shown that NOB1 is kept in an inactive state by its partner PNO14. The final maturation events, including the activation of NOB1 for the decisive rRNA-cleavage step and the mechanisms driving the dissociation of the last biogenesis factors have, however, remained unresolved. Here we report five cryo-electron microscopy structures of human 40S subunit precursors, which describe the compositional and conformational progression during the final steps of 40S assembly. Our structures explain the central role of RIOK1 in the displacement and dissociation of PNO1, which in turn allows conformational changes and activation of the endonuclease NOB1. In addition, we observe two factors, eukaryotic translation initiation factor 1A domain-containing protein (EIF1AD) and leucine-rich repeat-containing protein 47 (LRRC47), which bind to late pre-40S particles near RIOK1 and the central rRNA helix 44. Finally, functional data shows that EIF1AD is required for efficient assembly factor recycling and 18S-E processing. Our results thus enable a detailed understanding of the last steps in 40S formation in human cells and, in addition, provide evidence for principal differences in small ribosomal subunit formation between humans and the model organism Saccharomyces cerevisiae.

journal_name

Nature

journal_title

Nature

authors

Ameismeier M,Zemp I,van den Heuvel J,Thoms M,Berninghausen O,Kutay U,Beckmann R

doi

10.1038/s41586-020-2929-x

subject

Has Abstract

pub_date

2020-11-01 00:00:00

pages

683-687

issue

7835

eissn

0028-0836

issn

1476-4687

pii

10.1038/s41586-020-2929-x

journal_volume

587

pub_type

杂志文章

相关文献

NATURE文献大全
  • Ensuring meiotic DNA break formation in the mouse pseudoautosomal region.

    abstract::Sex chromosomes in males of most eutherian mammals share only a small homologous segment, the pseudoautosomal region (PAR), in which the formation of double-strand breaks (DSBs), pairing and crossing over must occur for correct meiotic segregation1,2. How cells ensure that recombination occurs in the PAR is unknown. H...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2327-4

    authors: Acquaviva L,Boekhout M,Karasu ME,Brick K,Pratto F,Li T,van Overbeek M,Kauppi L,Camerini-Otero RD,Jasin M,Keeney S

    更新日期:2020-06-01 00:00:00

  • Solution structure of the DNA-binding domain of Cd2-GAL4 from S. cerevisiae.

    abstract::The GAL4 protein activates transcription of the genes required for galactose utilization in Saccharomyces cerevisiae. The protein, consisting of 881 amino acids, is dimeric when bound to one of the approximately twofold symmetrical DNA sites present in the galactose upstream activating sequence (UASG). Here we use two...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/356450a0

    authors: Baleja JD,Marmorstein R,Harrison SC,Wagner G

    更新日期:1992-04-02 00:00:00

  • Loss of p53 triggers WNT-dependent systemic inflammation to drive breast cancer metastasis.

    abstract::Cancer-associated systemic inflammation is strongly linked to poor disease outcome in patients with cancer1,2. For most human epithelial tumour types, high systemic neutrophil-to-lymphocyte ratios are associated with poor overall survival3, and experimental studies have demonstrated a causal relationship between neutr...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1450-6

    authors: Wellenstein MD,Coffelt SB,Duits DEM,van Miltenburg MH,Slagter M,de Rink I,Henneman L,Kas SM,Prekovic S,Hau CS,Vrijland K,Drenth AP,de Korte-Grimmerink R,Schut E,van der Heijden I,Zwart W,Wessels LFA,Schumacher TN,Jonk

    更新日期:2019-08-01 00:00:00

  • Division and differentiation of isolated CNS blast cells in microculture.

    abstract::The mechanism of transformation of the overtly similar cells of the neural plate into the numerous and diverse cell types of the mature vertebrate central nervous system (CNS) can better be understood by studying the clonal development of isolated CNS precursor cells. Here I describe a culture system in which blast ce...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/340471a0

    authors: Temple S

    更新日期:1989-08-10 00:00:00

  • Initial radiation of jaws demonstrated stability despite faunal and environmental change.

    abstract::More than 99 per cent of the roughly 58,000 living vertebrate species have jaws. This major clade, whose members are collectively known as gnathostomes ('jawed mouths'), made its earliest definitive appearance in the Silurian period, 444-416 million years (Myr) ago, with both the origin of the modern (crown-group) rad...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature10207

    authors: Anderson PS,Friedman M,Brazeau MD,Rayfield EJ

    更新日期:2011-07-06 00:00:00

  • Cyclin D-CDK4 kinase destabilizes PD-L1 via cullin 3-SPOP to control cancer immune surveillance.

    abstract::Treatments that target immune checkpoints, such as the one mediated by programmed cell death protein 1 (PD-1) and its ligand PD-L1, have been approved for treating human cancers with durable clinical benefit. However, many patients with cancer fail to respond to compounds that target the PD-1 and PD-L1 interaction, an...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature25015

    authors: Zhang J,Bu X,Wang H,Zhu Y,Geng Y,Nihira NT,Tan Y,Ci Y,Wu F,Dai X,Guo J,Huang YH,Fan C,Ren S,Sun Y,Freeman GJ,Sicinski P,Wei W

    更新日期:2018-01-04 00:00:00

  • Bending-related faulting and mantle serpentinization at the Middle America trench.

    abstract::The dehydration of subducting oceanic crust and upper mantle has been inferred both to promote the partial melting leading to arc magmatism and to induce intraslab intermediate-depth earthquakes, at depths of 50-300 km. Yet there is still no consensus about how slab hydration occurs or where and how much chemically bo...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature01961

    authors: Ranero CR,Morgan JP,McIntosh K,Reichert C

    更新日期:2003-09-25 00:00:00

  • GAL4-VP16 is an unusually potent transcriptional activator.

    abstract::Recent work has defined a class of transcriptional activators, members of which activate transcription in yeast, plant, insect and mammalian cells. These proteins contain two parts: one directs DNA binding and the other, called the activating region, presumably interacts with some component of the transcriptional mach...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/335563a0

    authors: Sadowski I,Ma J,Triezenberg S,Ptashne M

    更新日期:1988-10-06 00:00:00

  • Gain-of-function of mutated C-CBL tumour suppressor in myeloid neoplasms.

    abstract::Acquired uniparental disomy (aUPD) is a common feature of cancer genomes, leading to loss of heterozygosity. aUPD is associated not only with loss-of-function mutations of tumour suppressor genes, but also with gain-of-function mutations of proto-oncogenes. Here we show unique gain-of-function mutations of the C-CBL (...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08240

    authors: Sanada M,Suzuki T,Shih LY,Otsu M,Kato M,Yamazaki S,Tamura A,Honda H,Sakata-Yanagimoto M,Kumano K,Oda H,Yamagata T,Takita J,Gotoh N,Nakazaki K,Kawamata N,Onodera M,Nobuyoshi M,Hayashi Y,Harada H,Kurokawa M,Chiba

    更新日期:2009-08-13 00:00:00

  • Mammalian microRNAs predominantly act to decrease target mRNA levels.

    abstract::MicroRNAs (miRNAs) are endogenous approximately 22-nucleotide RNAs that mediate important gene-regulatory events by pairing to the mRNAs of protein-coding genes to direct their repression. Repression of these regulatory targets leads to decreased translational efficiency and/or decreased mRNA levels, but the relative ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature09267

    authors: Guo H,Ingolia NT,Weissman JS,Bartel DP

    更新日期:2010-08-12 00:00:00

  • Contour from motion processing occurs in primary visual cortex.

    abstract::Relative motion is one of the most salient cues for segmentation of a visual scene into separate objects. This is illustrated by the vivid contours that are perceived when random dot patterns move in different directions. Once motion is halted in such displays the segmentation contours disappear. This makes random dot...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/363541a0

    authors: Lamme VA,van Dijk BW,Spekreijse H

    更新日期:1993-06-10 00:00:00

  • Genomic analyses inform on migration events during the peopling of Eurasia.

    abstract::High-coverage whole-genome sequence studies have so far focused on a limited number of geographically restricted populations, or been targeted at specific diseases, such as cancer. Nevertheless, the availability of high-resolution genomic data has led to the development of new methodologies for inferring population hi...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature19792

    authors: Pagani L,Lawson DJ,Jagoda E,Mörseburg A,Eriksson A,Mitt M,Clemente F,Hudjashov G,DeGiorgio M,Saag L,Wall JD,Cardona A,Mägi R,Wilson Sayres MA,Kaewert S,Inchley C,Scheib CL,Järve M,Karmin M,Jacobs GS,Antao T,Ilie

    更新日期:2016-10-13 00:00:00

  • A complete catalogue of high-quality topological materials.

    abstract::Using a recently developed formalism called topological quantum chemistry, we perform a high-throughput search of 'high-quality' materials (for which the atomic positions and structure have been measured very accurately) in the Inorganic Crystal Structure Database in order to identify new topological phases. We develo...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-0954-4

    authors: Vergniory MG,Elcoro L,Felser C,Regnault N,Bernevig BA,Wang Z

    更新日期:2019-02-01 00:00:00

  • Trace element signature of subduction-zone fluids, melts and supercritical liquids at 120-180 km depth.

    abstract::Fluids and melts liberated from subducting oceanic crust recycle lithophile elements back into the mantle wedge, facilitate melting and ultimately lead to prolific subduction-zone arc volcanism. The nature and composition of the mobile phases generated in the subducting slab at high pressures have, however, remained l...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03971

    authors: Kessel R,Schmidt MW,Ulmer P,Pettke T

    更新日期:2005-09-29 00:00:00

  • Phosphorylation-induced binding and transcriptional efficacy of nuclear factor CREB.

    abstract::A nuclear protein, CREB, has been isolated from rat brain and shown to stimulate transcription of the cyclic AMP-responsive gene somatostatin as a dimer. Biochemical analysis suggests that dimerization and transcriptional efficacy of CREB protein in vitro are regulated by phosphorylation. These findings demonstrate th...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/334494a0

    authors: Yamamoto KK,Gonzalez GA,Biggs WH 3rd,Montminy MR

    更新日期:1988-08-11 00:00:00

  • Cranial skeletal biology.

    abstract::To artists, the face is a mirror of the soul. To biologists, the face reflects remarkable structural diversity--think of bulldogs and wolfhounds or galapagos finches. How do such variations in skeletal form arise? Do the same mechanisms control skeletogenesis elsewhere in the body? The answers lie in the molecular mac...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature01656

    authors: Helms JA,Schneider RA

    更新日期:2003-05-15 00:00:00

  • Autocatalytic synthesis of a tetranucleotide analogue.

    abstract::As an approach to the study of the kind of chemical process that might have contributed to the origin of life, attempts have been made to develop purely chemical systems in which oligonucleotides self-replicate. Although performed oligonucleotides have been shown to facilitate the formation of their complements from a...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/327346a0

    authors: Zielinski WS,Orgel LE

    更新日期:1987-05-28 00:00:00

  • Materials chemistry: a synthetic enamel for rapid tooth repair.

    abstract::The conventional treatment of dental caries involves mechanical removal of the affected part and filling of the hole with a resin or metal alloy. But this method is not ideal for tiny early lesions because a disproportionate amount of healthy tooth must be removed to make the alloy or resin stick. Here we describe a d...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/433819a

    authors: Yamagishi K,Onuma K,Suzuki T,Okada F,Tagami J,Otsuki M,Senawangse P

    更新日期:2005-02-24 00:00:00

  • Regulation and deregulation of cardiac Na(+)-Ca2+ exchange in giant excised sarcolemmal membrane patches.

    abstract::A plasmalemmal Na(+)-Ca2+ exchange mechanism is an important electrogenic determinant of contractility in cardiac cells. As in other cell types, calcium influx by Na(+)-Ca2+ exchange is secondarily activated by cytoplasmic calcium and probably ATP, but these modulatory mechanisms are either absent or altered in isolat...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/344242a0

    authors: Hilgemann DW

    更新日期:1990-03-15 00:00:00

  • Fossil mammals and artefacts from the Middle Awash Valley, Ethiopia.

    abstract::A review of fossil mammalian faunas from the Middle Awash indicates they span most of the later Neogene and document evolutionary change in several mammalian groups, especially Primates, Proboscidea and Artiodactyla. Oldowan artefacts first appear in the late Pliocene, while Acheulian and later industries and apparent...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/298025a0

    authors: Kalb JE,Jolly CJ,Mebrate A,Tebedge S,Smart C,Oswald EB,Cramer D,Whitehead P,Wood CB,Conroy GC,Adefris T,Sperling L,Kana B

    更新日期:1982-07-01 00:00:00

  • Sensory adaptation. Tunable colour vision in a mantis shrimp.

    abstract::Systems of colour vision are normally identical in all members of a species, but a single design may not be adequate for species living in a diverse range of light environments. Here we show that in the mantis shrimp Haptosquilla trispinosa, which occupies a range of depths in the ocean, long-wavelength colour recepto...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35079184

    authors: Cronin TW,Caldwell RL,Marshall J

    更新日期:2001-05-31 00:00:00

  • Students need guidance in languages they speak.

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07674-6

    authors: Rios Rojas C

    更新日期:2018-12-01 00:00:00

  • Glycosphingolipid synthesis requires FAPP2 transfer of glucosylceramide.

    abstract::The molecular machinery responsible for the generation of transport carriers moving from the Golgi complex to the plasma membrane relies on a tight interplay between proteins and lipids. Among the lipid-binding proteins of this machinery, we previously identified the four-phosphate adaptor protein FAPP2, the pleckstri...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature06097

    authors: D'Angelo G,Polishchuk E,Di Tullio G,Santoro M,Di Campli A,Godi A,West G,Bielawski J,Chuang CC,van der Spoel AC,Platt FM,Hannun YA,Polishchuk R,Mattjus P,De Matteis MA

    更新日期:2007-09-06 00:00:00

  • Molecular recognition of a single sphingolipid species by a protein's transmembrane domain.

    abstract::Functioning and processing of membrane proteins critically depend on the way their transmembrane segments are embedded in the membrane. Sphingolipids are structural components of membranes and can also act as intracellular second messengers. Not much is known of sphingolipids binding to transmembrane domains (TMDs) of...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10742

    authors: Contreras FX,Ernst AM,Haberkant P,Björkholm P,Lindahl E,Gönen B,Tischer C,Elofsson A,von Heijne G,Thiele C,Pepperkok R,Wieland F,Brügger B

    更新日期:2012-01-09 00:00:00

  • Nitrogen fixation gene (nifL) involved in oxygen regulation of nitrogenase synthesis in K. pneumoniae.

    abstract::The enzyme complex nitrogenase, which reduces N2 to NH+4, involves two redox proteins, both irreversibly damaged by O2 (ref. 1). Enzyme activity therefore requires anaerobic conditions, a source of reductant and a large amount of ATP (approximately 16 ATPs per N2). In both aerobic and facultative anaerobic N2-fixing b...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/290424a0

    authors: Hill S,Kennedy C,Kavanagh E,Goldberg RB,Hanau R

    更新日期:1981-04-02 00:00:00

  • The oil palm SHELL gene controls oil yield and encodes a homologue of SEEDSTICK.

    abstract::A key event in the domestication and breeding of the oil palm Elaeis guineensis was loss of the thick coconut-like shell surrounding the kernel. Modern E. guineensis has three fruit forms, dura (thick-shelled), pisifera (shell-less) and tenera (thin-shelled), a hybrid between dura and pisifera. The pisifera palm is us...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12356

    authors: Singh R,Low ET,Ooi LC,Ong-Abdullah M,Ting NC,Nagappan J,Nookiah R,Amiruddin MD,Rosli R,Manaf MA,Chan KL,Halim MA,Azizi N,Lakey N,Smith SW,Budiman MA,Hogan M,Bacher B,Van Brunt A,Wang C,Ordway JM,Sambanthamurthi

    更新日期:2013-08-15 00:00:00

  • Association of COVID-19 inflammation with activation of the C5a-C5aR1 axis.

    abstract::Coronavirus disease 2019 (COVID-19) is a disease caused by infection with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and has resulted in a pandemic1. The C5a complement factor and its receptor C5aR1 (also known as CD88) have a key role in the initiation and maintenance of several inflammatory respons...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2600-6

    authors: Carvelli J,Demaria O,Vély F,Batista L,Chouaki Benmansour N,Fares J,Carpentier S,Thibult ML,Morel A,Remark R,André P,Represa A,Piperoglou C,Explore COVID-19 IPH group.,Explore COVID-19 Marseille Immunopole group.,Cordier PY

    更新日期:2020-12-01 00:00:00

  • Conformational change and protein-protein interactions of the fusion protein of Semliki Forest virus.

    abstract::Fusion of biological membranes is mediated by specific lipid-interacting proteins that induce the formation and expansion of an initial fusion pore. Here we report the crystal structure of the ectodomain of the Semliki Forest virus fusion glycoprotein E1 in its low-pH-induced trimeric form. E1 adopts a folded-back con...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02239

    authors: Gibbons DL,Vaney MC,Roussel A,Vigouroux A,Reilly B,Lepault J,Kielian M,Rey FA

    更新日期:2004-01-22 00:00:00

  • Proton inhibition of N-methyl-D-aspartate receptors in cerebellar neurons.

    abstract::Mammalian neurons contain at least three types of excitatory amino-acid receptors, selectively activated by N-methyl-D-aspartate (NMDA) or aspartate, (S)-alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionate ((S)-AMPA) and kainate. An important aspect of NMDA receptors is their regulation by a variety of factors such...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/345347a0

    authors: Traynelis SF,Cull-Candy SG

    更新日期:1990-05-24 00:00:00

  • Paths to understanding the genetic basis of autoimmune disease.

    abstract::Some people inherit an unfortunate combination of genetic sequences, such that exposure to an external trigger causes their immune response to turn on their own tissues. Although mutations in a single gene can cause autoimmunity, most autoimmune diseases are associated with several sequence variants. Marked advances i...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature03723

    authors: Rioux JD,Abbas AK

    更新日期:2005-06-02 00:00:00