A high-stringency blueprint of the human proteome.

Abstract:

:The Human Proteome Organization (HUPO) launched the Human Proteome Project (HPP) in 2010, creating an international framework for global collaboration, data sharing, quality assurance and enhancing accurate annotation of the genome-encoded proteome. During the subsequent decade, the HPP established collaborations, developed guidelines and metrics, and undertook reanalysis of previously deposited community data, continuously increasing the coverage of the human proteome. On the occasion of the HPP's tenth anniversary, we here report a 90.4% complete high-stringency human proteome blueprint. This knowledge is essential for discerning molecular processes in health and disease, as we demonstrate by highlighting potential roles the human proteome plays in our understanding, diagnosis and treatment of cancers, cardiovascular and infectious diseases.

journal_name

Nat Commun

journal_title

Nature communications

authors

Adhikari S,Nice EC,Deutsch EW,Lane L,Omenn GS,Pennington SR,Paik YK,Overall CM,Corrales FJ,Cristea IM,Van Eyk JE,Uhlén M,Lindskog C,Chan DW,Bairoch A,Waddington JC,Justice JL,LaBaer J,Rodriguez H,He F,Kostrzewa M

doi

10.1038/s41467-020-19045-9

subject

Has Abstract

pub_date

2020-10-16 00:00:00

pages

5301

issue

1

issn

2041-1723

pii

10.1038/s41467-020-19045-9

journal_volume

11

pub_type

杂志文章,评审
  • Cryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process.

    abstract::Owing to their pathogenical role and unique ability to exist both as soluble proteins and transmembrane complexes, pore-forming toxins (PFTs) have been a focus of microbiologists and structural biologists for decades. PFTs are generally secreted as water-soluble monomers and subsequently bind the membrane of target ce...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12062

    authors: Iacovache I,De Carlo S,Cirauqui N,Dal Peraro M,van der Goot FG,Zuber B

    更新日期:2016-07-13 00:00:00

  • Publisher Correction: Creative exploration as a scale-invariant search on a meaning landscape.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-020-14901-0

    authors: Hart Y,Goldberg H,Striem-Amit E,Mayo AE,Noy L,Alon U

    更新日期:2020-02-24 00:00:00

  • Host suppression of quorum sensing during catheter-associated urinary tract infections.

    abstract::Chronic bacterial infections on medical devices, including catheter-associated urinary tract infections (CAUTI), are associated with bacterial biofilm communities that are refractory to antibiotic therapy and resistant to host immunity. Previously, we have shown that Pseudomonas aeruginosa can cause CAUTI by forming a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06882-y

    authors: Cole SJ,Hall CL,Schniederberend M,Farrow Iii JM,Goodson JR,Pesci EC,Kazmierczak BI,Lee VT

    更新日期:2018-10-25 00:00:00

  • Actin-based confinement of calcium responses during Shigella invasion.

    abstract::Shigella, the agent of bacillary dysentery, invades epithelial cells by locally inducing actin reorganization. Upon cell invasion, Shigella induces calcium (Ca(2+)) signalling, but its role in invasion has remained unclear. Here we show that components involved in inositol 1, 4, 5- trisphosphate (InsP3) signalling are...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2561

    authors: Tran Van Nhieu G,Kai Liu B,Zhang J,Pierre F,Prigent S,Sansonetti P,Erneux C,Kuk Kim J,Suh PG,Dupont G,Combettes L

    更新日期:2013-01-01 00:00:00

  • Constant-intensity waves and their modulation instability in non-Hermitian potentials.

    abstract::In all of the diverse areas of science where waves play an important role, one of the most fundamental solutions of the corresponding wave equation is a stationary wave with constant intensity. The most familiar example is that of a plane wave propagating in free space. In the presence of any Hermitian potential, a wa...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8257

    authors: Makris KG,Musslimani ZH,Christodoulides DN,Rotter S

    更新日期:2015-07-08 00:00:00

  • Artificial van der Waals hybrid synapse and its application to acoustic pattern recognition.

    abstract::Brain-inspired parallel computing, which is typically performed using a hardware neural-network platform consisting of numerous artificial synapses, is a promising technology for effectively handling large amounts of informational data. However, the reported nonlinear and asymmetric conductance-update characteristics ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17849-3

    authors: Seo S,Kang BS,Lee JJ,Ryu HJ,Kim S,Kim H,Oh S,Shim J,Heo K,Oh S,Park JH

    更新日期:2020-08-07 00:00:00

  • Millimetre-long transport of photogenerated carriers in topological insulators.

    abstract::Excitons are spin integer particles that are predicted to condense into a coherent quantum state at sufficiently low temperature. Here by using photocurrent imaging we report experimental evidence of formation and efficient transport of non-equilibrium excitons in Bi2-xSbxSe3 nanoribbons. The photocurrent distribution...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13711-3

    authors: Hou Y,Wang R,Xiao R,McClintock L,Clark Travaglini H,Paulus Francia J,Fetsch H,Erten O,Savrasov SY,Wang B,Rossi A,Vishik I,Rotenberg E,Yu D

    更新日期:2019-12-16 00:00:00

  • Clouds enhance Greenland ice sheet meltwater runoff.

    abstract::The Greenland ice sheet has become one of the main contributors to global sea level rise, predominantly through increased meltwater runoff. The main drivers of Greenland ice sheet runoff, however, remain poorly understood. Here we show that clouds enhance meltwater runoff by about one-third relative to clear skies, us...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10266

    authors: Van Tricht K,Lhermitte S,Lenaerts JT,Gorodetskaya IV,L'Ecuyer TS,Noël B,van den Broeke MR,Turner DD,van Lipzig NP

    更新日期:2016-01-12 00:00:00

  • Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells.

    abstract::Congenital Zika syndrome (CZS) causes early brain development impairment by affecting neural progenitor cells (NPCs). Here, we analyze NPCs from three pairs of dizygotic twins discordant for CZS. We compare by RNA-Seq the NPCs derived from CZS-affected and CZS-unaffected twins. Prior to Zika virus (ZIKV) infection the...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-02790-9

    authors: Caires-Júnior LC,Goulart E,Melo US,Araujo BHS,Alvizi L,Soares-Schanoski A,de Oliveira DF,Kobayashi GS,Griesi-Oliveira K,Musso CM,Amaral MS,daSilva LF,Astray RM,Suárez-Patiño SF,Ventini DC,Gomes da Silva S,Yamamoto GL,Ez

    更新日期:2018-02-02 00:00:00

  • Highly efficient eco-friendly X-ray scintillators based on an organic manganese halide.

    abstract::Scintillation based X-ray detection has received great attention for its application in a wide range of areas from security to healthcare. Here, we report highly efficient X-ray scintillators with state-of-the-art performance based on an organic metal halide, ethylenebis-triphenylphosphonium manganese (II) bromide ((C...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18119-y

    authors: Xu LJ,Lin X,He Q,Worku M,Ma B

    更新日期:2020-08-28 00:00:00

  • Targeted production of reactive oxygen species in mitochondria to overcome cancer drug resistance.

    abstract::Multidrug resistance is a major challenge to cancer chemotherapy. The multidrug resistance phenotype is associated with the overexpression of the adenosine triphosphate (ATP)-driven transmembrane efflux pumps in cancer cells. Here, we report a lipid membrane-coated silica-carbon (LSC) hybrid nanoparticle that targets ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-02915-8

    authors: Wang H,Gao Z,Liu X,Agarwal P,Zhao S,Conroy DW,Ji G,Yu J,Jaroniec CP,Liu Z,Lu X,Li X,He X

    更新日期:2018-02-08 00:00:00

  • Long-term deep-supercooling of large-volume water and red cell suspensions via surface sealing with immiscible liquids.

    abstract::Supercooling of aqueous solutions is a fundamentally and practically important physical phenomenon with numerous applications in biopreservation and beyond. Under normal conditions, heterogeneous nucleation mechanisms critically prohibit the simultaneous long-term (> 1 week), large volume (> 1 ml), and low temperature...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05636-0

    authors: Huang H,Yarmush ML,Usta OB

    更新日期:2018-08-10 00:00:00

  • Precise capture and dynamic relocation of nanoparticulate biomolecules through dielectrophoretic enhancement by vertical nanogap architectures.

    abstract::Toward the development of surface-sensitive analytical techniques for biosensors and diagnostic biochip assays, a local integration of low-concentration target materials into the sensing region of interest is essential to improve the sensitivity and reliability of the devices. As a result, the dynamic process of sorti...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16630-w

    authors: Yu ES,Lee H,Lee SM,Kim J,Kim T,Lee J,Kim C,Seo M,Kim JH,Byun YT,Park SC,Lee SY,Lee SD,Ryu YS

    更新日期:2020-06-04 00:00:00

  • The cell-wide web coordinates cellular processes by directing site-specific Ca2+ flux across cytoplasmic nanocourses.

    abstract::Ca2+ coordinates diverse cellular processes, yet how function-specific signals arise is enigmatic. We describe a cell-wide network of distinct cytoplasmic nanocourses with the nucleus at its centre, demarcated by sarcoplasmic reticulum (SR) junctions (≤400 nm across) that restrict Ca2+ diffusion and by nanocourse-spec...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10055-w

    authors: Duan J,Navarro-Dorado J,Clark JH,Kinnear NP,Meinke P,Schirmer EC,Evans AM

    更新日期:2019-05-24 00:00:00

  • Ecological constraints increase the climatic debt in forests.

    abstract::Biodiversity changes are lagging behind current climate warming. The underlying determinants of this climatic debt are unknown and yet critical to understand the impacts of climate change on the present biota and improve forecasts of biodiversity changes. Here we assess determinants of climatic debt accumulated in Fre...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12643

    authors: Bertrand R,Riofrío-Dillon G,Lenoir J,Drapier J,de Ruffray P,Gégout JC,Loreau M

    更新日期:2016-08-26 00:00:00

  • Phenylalkylammonium passivation enables perovskite light emitting diodes with record high-radiance operational lifetime: the chain length matters.

    abstract::Perovskite light emitting diodes suffer from poor operational stability, exhibiting a rapid decay of external quantum efficiency within minutes to hours after turn-on. To address this issue, we explore surface treatment of perovskite films with phenylalkylammonium iodide molecules of varying alkyl chain lengths. Combi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-021-20970-6

    authors: Guo Y,Apergi S,Li N,Chen M,Yin C,Yuan Z,Gao F,Xie F,Brocks G,Tao S,Zhao N

    更新日期:2021-01-28 00:00:00

  • Rapid expansion of Treg cells protects from collateral colitis following a viral trigger.

    abstract::Foxp3+ regulatory T (Treg) cells are essential for maintaining peripheral tolerance and preventing autoimmunity. While genetic factors may predispose for autoimmunity, additional environmental triggers, such as viral infections, are usually required to initiate the onset of disease. Here, we show that viral infection ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15309-6

    authors: Schorer M,Lambert K,Rakebrandt N,Rost F,Kao KC,Yermanos A,Spörri R,Oderbolz J,Raeber ME,Keller CW,Lünemann JD,Rogler G,Boyman O,Oxenius A,Joller N

    更新日期:2020-03-23 00:00:00

  • Exploring the ternary interactions in Cu-ZnO-ZrO2 catalysts for efficient CO2 hydrogenation to methanol.

    abstract::The synergistic interaction among different components in complex catalysts is one of the crucial factors in determining catalytic performance. Here we report the interactions among the three components in controlling the catalytic performance of Cu-ZnO-ZrO2 (CZZ) catalyst for CO2 hydrogenation to methanol. The in sit...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09072-6

    authors: Wang Y,Kattel S,Gao W,Li K,Liu P,Chen JG,Wang H

    更新日期:2019-03-11 00:00:00

  • Environmental fluctuations accelerate molecular evolution of thermal tolerance in a marine diatom.

    abstract::Diatoms contribute roughly 20% of global primary production, but the factors determining their ability to adapt to global warming are unknown. Here we quantify the capacity for adaptation to warming in the marine diatom Thalassiosira pseudonana. We find that evolutionary rescue under severe (32 °C) warming is slow, bu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03906-5

    authors: Schaum CE,Buckling A,Smirnoff N,Studholme DJ,Yvon-Durocher G

    更新日期:2018-04-30 00:00:00

  • Assembly intermediates of orthoreovirus captured in the cell.

    abstract::Traditionally, molecular assembly pathways for viruses are inferred from high resolution structures of purified stable intermediates, low resolution images of cell sections and genetic approaches. Here, we directly visualise an unsuspected 'single shelled' intermediate for a mammalian orthoreovirus in cryo-preserved i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18243-9

    authors: Sutton G,Sun D,Fu X,Kotecha A,Hecksel CW,Clare DK,Zhang P,Stuart DI,Boyce M

    更新日期:2020-09-07 00:00:00

  • Competition for nutrients and its role in controlling immune responses.

    abstract::Changes in cellular metabolism are associated with the activation of diverse immune subsets. These changes are fuelled by nutrients including glucose, amino acids and fatty acids, and are closely linked to immune cell fate and function. An emerging concept is that nutrients are not equally available to all immune cell...

    journal_title:Nature communications

    pub_type: 杂志文章,评审

    doi:10.1038/s41467-019-10015-4

    authors: Kedia-Mehta N,Finlay DK

    更新日期:2019-05-09 00:00:00

  • Super-resolution microscopy reveals functional organization of dopamine transporters into cholesterol and neuronal activity-dependent nanodomains.

    abstract::Dopamine regulates reward, cognition, and locomotor functions. By mediating rapid reuptake of extracellular dopamine, the dopamine transporter is critical for spatiotemporal control of dopaminergic neurotransmission. Here, we use super-resolution imaging to show that the dopamine transporter is dynamically sequestrate...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00790-3

    authors: Rahbek-Clemmensen T,Lycas MD,Erlendsson S,Eriksen J,Apuschkin M,Vilhardt F,Jørgensen TN,Hansen FH,Gether U

    更新日期:2017-09-29 00:00:00

  • Accurate, scalable and integrative haplotype estimation.

    abstract::The number of human genomes being genotyped or sequenced increases exponentially and efficient haplotype estimation methods able to handle this amount of data are now required. Here we present a method, SHAPEIT4, which substantially improves upon other methods to process large genotype and high coverage sequencing dat...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13225-y

    authors: Delaneau O,Zagury JF,Robinson MR,Marchini JL,Dermitzakis ET

    更新日期:2019-11-28 00:00:00

  • Highly sensitive switching of solid-state luminescence by controlling intersystem crossing.

    abstract::The development of intelligent materials, in particular those showing the highly sensitive mechanoresponsive luminescence (MRL), is desirable but challenging. Here we report a design strategy for constructing high performance On-Off MRL materials by introducing nitrophenyl groups to molecules with aggregation-induced ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05476-y

    authors: Zhao W,He Z,Peng Q,Lam JWY,Ma H,Qiu Z,Chen Y,Zhao Z,Shuai Z,Dong Y,Tang BZ

    更新日期:2018-08-02 00:00:00

  • A majority of HIV persistence during antiretroviral therapy is due to infected cell proliferation.

    abstract::Antiretroviral therapy (ART) suppresses viral replication in people living with HIV. Yet, infected cells persist for decades on ART and viremia returns if ART is stopped. Persistence has been attributed to viral replication in an ART sanctuary and long-lived and/or proliferating latently infected cells. Using ecologic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06843-5

    authors: Reeves DB,Duke ER,Wagner TA,Palmer SE,Spivak AM,Schiffer JT

    更新日期:2018-11-16 00:00:00

  • A prevalent cancer susceptibility APOBEC3A hybrid allele bearing APOBEC3B 3'UTR enhances chromosomal DNA damage.

    abstract::Human APOBEC3A (A3A) cytidine deaminase is a host enzyme that can introduce mutations into chromosomal DNA. As APOBEC3B (A3B) encodes a C-terminal catalytic domain ~91% identical to A3A, we examined its genotoxic potential as well as that of a highly prevalent chimaeric A3A-A3B deletion allele (ΔA3B), which is linked ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms6129

    authors: Caval V,Suspène R,Shapira M,Vartanian JP,Wain-Hobson S

    更新日期:2014-10-09 00:00:00

  • Crucial roles of RSK in cell motility by catalysing serine phosphorylation of EphA2.

    abstract::Crosstalk between inflammatory signalling pathways and receptor tyrosine kinases has been revealed as an indicator of cancer malignant progression. In the present study, we focus on EphA2 receptor tyrosine kinase, which is overexpressed in many human cancers. It has been reported that ligand-independent phosphorylatio...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8679

    authors: Zhou Y,Yamada N,Tanaka T,Hori T,Yokoyama S,Hayakawa Y,Yano S,Fukuoka J,Koizumi K,Saiki I,Sakurai H

    更新日期:2015-07-09 00:00:00

  • Boosting lithium storage in covalent organic framework via activation of 14-electron redox chemistry.

    abstract::Conjugated polymeric molecules have been heralded as promising electrode materials for the next-generation energy-storage technologies owing to their chemical flexibility at the molecular level, environmental benefit, and cost advantage. However, before any practical implementation takes place, the low capacity, poor ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-02889-7

    authors: Lei Z,Yang Q,Xu Y,Guo S,Sun W,Liu H,Lv LP,Zhang Y,Wang Y

    更新日期:2018-02-08 00:00:00

  • Archimedes' law explains penetration of solids into granular media.

    abstract::Understanding the response of granular matter to intrusion of solid objects is key to modelling many aspects of behaviour of granular matter, including plastic flow. Here we report a general model for such a quasistatic process. Using a range of experiments, we first show that the relation between the penetration dept...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03344-3

    authors: Kang W,Feng Y,Liu C,Blumenfeld R

    更新日期:2018-03-16 00:00:00

  • Identification of a pocket factor that is critical to Zika virus assembly.

    abstract::Zika virus (ZIKV) is an emerging mosquito borne flavivirus and a major public health concern causing severe disease. Due to the presence of a lipid membrane and structural heterogeneity, attaining an atomic resolution structure is challenging, but important to understand virus assembly and life cycle mechanisms that o...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18747-4

    authors: DiNunno NM,Goetschius DJ,Narayanan A,Majowicz SA,Moustafa I,Bator CM,Hafenstein SL,Jose J

    更新日期:2020-10-02 00:00:00