How to fix DNA-protein crosslinks.

Abstract:

:Proteins that act on DNA, or are in close proximity to it, can become inadvertently crosslinked to DNA and form highly toxic lesions, known as DNA-protein crosslinks (DPCs). DPCs are generated by different chemotherapeutics, environmental or endogenous sources of crosslinking agents, or by lesions on DNA that stall the catalytic cycle of certain DNA processing enzymes. These bulky adducts impair processes on DNA such as DNA replication or transcription, and therefore pose a serious threat to genome integrity. The large diversity of DPCs suggests that there is more than one canonical mechanism to repair them. Indeed, many different enzymes have been shown to act on DPCs by either processing the protein, the DNA or the crosslink itself. In addition, the cell cycle stage or cell type are likely to dictate pathway choice. In recent years, a detailed understanding of DPC repair during S phase has started to emerge. Here, we review the current knowledge on the mechanisms of replication-coupled DPC repair, and describe and also speculate on possible pathways that remove DPCs outside of S phase. Moreover, we highlight a recent paradigm shifting finding that indicates that DPCs are not always detrimental, but can also play a protective role, preserving the genome from more deleterious forms of DNA damage.

journal_name

DNA Repair (Amst)

journal_title

DNA repair

authors

Kühbacher U,Duxin JP

doi

10.1016/j.dnarep.2020.102924

subject

Has Abstract

pub_date

2020-10-01 00:00:00

pages

102924

eissn

1568-7864

issn

1568-7856

pii

S1568-7864(20)30173-7

journal_volume

94

pub_type

杂志文章
  • Disruption of SUMO-targeted ubiquitin ligases Slx5-Slx8/RNF4 alters RecQ-like helicase Sgs1/BLM localization in yeast and human cells.

    abstract::RecQ-like helicases are a highly conserved protein family that functions during DNA repair and, when mutated in humans, is associated with cancer and/or premature aging syndromes. The budding yeast RecQ-like helicase Sgs1 has important functions in double-strand break (DSB) repair of exogenously induced breaks, as wel...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2014.12.004

    authors: Böhm S,Mihalevic MJ,Casal MA,Bernstein KA

    更新日期:2015-02-01 00:00:00

  • XPA protein as a limiting factor for nucleotide excision repair and UV sensitivity in human cells.

    abstract::Nucleotide excision repair (NER) acts on a variety of DNA lesions, including damage induced by many chemotherapeutic drugs. Cancer therapy with such drugs might be improved by reducing the NER capacity of tumors. It is not known, however to what extent any individual NER protein is rate-limiting for any step of the re...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2005.12.001

    authors: Köberle B,Roginskaya V,Wood RD

    更新日期:2006-05-10 00:00:00

  • Molecular characterization and developmental expression of the TFIIH factor p62 gene from Drosophila melanogaster: effects on the UV light sensitivity of a p62 mutant fly.

    abstract::TFIIH is a multiprotein complex that has a central role in the RNA pol II mediated transcription, in DNA repair and in the control of the cell cycle. Mutations in some components of TFIIH are associated with three hereditary human syndromes: xeroderma pigmentosum (XP), Cockayne syndrome (CS) and trichothiodystrophy (T...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00012-5

    authors: Castro J,Merino C,Zurita M

    更新日期:2002-05-30 00:00:00

  • Redox and epigenetic regulation of the APE1 gene in the hippocampus of piglets: The effect of early life exposures.

    abstract::Oxidative stress via redox reactions can regulate DNA repair pathways. The base excision repair (BER) enzyme apurinic/apyrimidinic endonuclease 1 (APE1) is a key player in the redox regulation of DNA repair. Environmental factors can alter the methylation of DNA repair genes, change their expression and thus modulate ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2014.03.011

    authors: Langie SA,Kowalczyk P,Tomaszewski B,Vasilaki A,Maas LM,Moonen EJ,Palagani A,Godschalk RW,Tudek B,van Schooten FJ,Berghe WV,Zabielski R,Mathers JC

    更新日期:2014-06-01 00:00:00

  • Dysfunctional mammalian telomeres join with DNA double-strand breaks.

    abstract::In addition to joining broken DNA strands, several non-homologous end-joining (NHEJ) proteins have a second seemingly antithetical role in constructing functional telomeres, the nucleoprotein structures at the termini of linear eukaryotic chromosomes that prevent joining between natural chromosome ends. Although NHEJ ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2003.11.007

    authors: Bailey SM,Cornforth MN,Ullrich RL,Goodwin EH

    更新日期:2004-04-01 00:00:00

  • Dormant origins as a built-in safeguard in eukaryotic DNA replication against genome instability and disease development.

    abstract::DNA replication is a prerequisite for cell proliferation, yet it can be increasingly challenging for a eukaryotic cell to faithfully duplicate its genome as its size and complexity expands. Dormant origins now emerge as a key component for cells to successfully accomplish such a demanding but essential task. In this p...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2017.06.019

    authors: Shima N,Pederson KD

    更新日期:2017-08-01 00:00:00

  • BACH2: a marker of DNA damage and ageing.

    abstract::DNA damage and ageing share expression changes involving alterations in many aspects of metabolism, suppression of growth and upregulation of defence and genome maintenance systems. "Omics" technologies have permitted large-scale parallel measurements covering global cellular constituents and aided the identification ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.08.016

    authors: Uittenboogaard LM,Payan-Gomez C,Pothof J,van Ijcken W,Mastroberardino PG,van der Pluijm I,Hoeijmakers JH,Tresini M

    更新日期:2013-11-01 00:00:00

  • Interaction of apurinic/apyrimidinic endonuclease 2 (Apn2) with Myh1 DNA glycosylase in fission yeast.

    abstract::Oxidative DNA damage is repaired primarily by the base excision repair (BER) pathway in a process initiated by removal of base lesions or mismatched bases by DNA glycosylases. MutY homolog (MYH, MUTYH, or Myh1) is a DNA glycosylase which excises adenine paired with the oxidative lesion 8-oxo-7,8-dihydroguanine (8-oxoG...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2014.01.001

    authors: Jin J,Hwang BJ,Chang PW,Toth EA,Lu AL

    更新日期:2014-03-01 00:00:00

  • The role of the SWI/SNF chromatin remodelling complex in the response to DNA double strand breaks.

    abstract::Mammalian cells possess multiple closely related SWI/SNF chromatin remodelling complexes. These complexes have been implicated in the cellular response to DNA double strand breaks (DSBs). Evidence suggests that SWI/SNF complexes contribute to successful repair via both the homologous recombination and non-homologous e...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2020.102919

    authors: Harrod A,Lane KA,Downs JA

    更新日期:2020-09-01 00:00:00

  • Oxidative DNA damage repair in mammalian cells: a new perspective.

    abstract::Oxidatively induced DNA lesions have been implicated in the etiology of many diseases (including cancer) and in aging. Repair of oxidatively damaged bases in all organisms occurs primarily via the DNA base excision repair (BER) pathway, initiated with their excision by DNA glycosylases. Only two mammalian DNA glycosyl...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2006.10.011

    authors: Hazra TK,Das A,Das S,Choudhury S,Kow YW,Roy R

    更新日期:2007-04-01 00:00:00

  • Cross-species inhibition of dUTPase via the Staphylococcal Stl protein perturbs dNTP pool and colony formation in Mycobacterium.

    abstract::Proteins responsible for the integrity of the genome are often used targets in drug therapies against various diseases. The inhibitors of these proteins are also important to study the pathways in genome integrity maintenance. A prominent example is Ugi, a well known cross-species inhibitor protein of the enzyme uraci...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2015.03.005

    authors: Hirmondó R,Szabó JE,Nyíri K,Tarjányi S,Dobrotka P,Tóth J,Vértessy BG

    更新日期:2015-06-01 00:00:00

  • A second life in science--working after the age of 65.

    abstract::I was born in January, 1921 and was fortunate in working for a research organization that had no fixed retirement age. I was permitted to continue Science as long as there were some resources to support research that had some relevance to the organization's goals. A number of projects on which I worked were continuati...

    journal_title:DNA repair

    pub_type: 历史文章,杂志文章

    doi:10.1016/j.dnarep.2003.04.002

    authors: Setlow RB

    更新日期:2004-04-01 00:00:00

  • RAD59 is required for efficient repair of simultaneous double-strand breaks resulting in translocations in Saccharomyces cerevisiae.

    abstract::Exposure to ionizing radiation results in a variety of genome rearrangements that have been linked to tumor formation. Many of these rearrangements are thought to arise from the repair of double-strand breaks (DSBs) by several mechanisms, including homologous recombination (HR) between repetitive sequences dispersed t...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.02.003

    authors: Pannunzio NR,Manthey GM,Bailis AM

    更新日期:2008-05-03 00:00:00

  • A PIAS-ed view of DNA double strand break repair focuses on SUMO.

    abstract::Through the action of multiple sensors, mediators, and effectors, the DNA damage response (DDR) orchestrates the repair of DNA damage to ensure maintenance of genomic integrity. Recently, in addition to phosphorylation, other post-translational modifications such as ubiquitylation and SUMOylation have emerged as impor...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2010.02.003

    authors: Zlatanou A,Stewart GS

    更新日期:2010-05-04 00:00:00

  • The role of ATM and ATR in the cellular response to hypoxia and re-oxygenation.

    abstract::ATM and ATR are stress-response kinases which respond to a variety of insults including ionizing radiation, replication arrest, ultraviolet radiation and hypoxia/re-oxygenation. Hypoxia occupies a unique niche in the study of both ATR- and ATM-mediated checkpoint pathways. Hypoxia is a physiologically significant stre...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2004.03.035

    authors: Hammond EM,Giaccia AJ

    更新日期:2004-08-01 00:00:00

  • Influence of XPB helicase on recruitment and redistribution of nucleotide excision repair proteins at sites of UV-induced DNA damage.

    abstract::The XPB DNA helicase, a subunit of the basal transcription factor TFIIH, is also involved in nucleotide excision repair (NER). We examined recruitment of NER proteins in XP-B cells from patients with mild or severe xeroderma pigmentosum (XP) having different XPB mutations using local UV-irradiation through filters wit...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.03.025

    authors: Oh KS,Imoto K,Boyle J,Khan SG,Kraemer KH

    更新日期:2007-09-01 00:00:00

  • The Rad5 helicase activity is dispensable for error-free DNA post-replication repair.

    abstract::DNA post-replication repair (PRR) functions to bypass replication-blocking lesions and is subdivided into two parallel pathways: error-prone translesion DNA synthesis and error-free PRR. While both pathways are dependent on the ubiquitination of PCNA, error-free PRR utilizes noncanonical K63-linked polyubiquitinated P...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2014.02.016

    authors: Ball LG,Xu X,Blackwell S,Hanna MD,Lambrecht AD,Xiao W

    更新日期:2014-04-01 00:00:00

  • NBS1 and its functional role in the DNA damage response.

    abstract::Nijmegen breakage syndrome is a recessive genetic disorder, characterized by elevated sensitivity to ionizing radiation, chromosome instability and high frequency of malignancies. Since cellular features partly overlap with those of ataxia-telangiectasia (A-T), NBS was long considered an A-T clinical variant. NBS1, th...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2004.03.023

    authors: Kobayashi J,Antoccia A,Tauchi H,Matsuura S,Komatsu K

    更新日期:2004-08-01 00:00:00

  • Amino acid changes in Xrs2p, Dun1p, and Rfa2p that remove the preferred targets of the ATM family of protein kinases do not affect DNA repair or telomere length in Saccharomyces cerevisiae.

    abstract::In eukaryotes, mutations in a number of genes that affect DNA damage checkpoints or DNA replication also affect telomere length [Curr. Opin. Cell Biol. 13 (2001) 281]. Saccharomyces cerevisae strains with mutations in the TEL1 gene (encoding an ATM-like protein kinase) have very short telomeres, as do strains with mut...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(03)00115-0

    authors: Mallory JC,Bashkirov VI,Trujillo KM,Solinger JA,Dominska M,Sung P,Heyer WD,Petes TD

    更新日期:2003-09-18 00:00:00

  • The roles of Rad16 and Rad26 in repairing repressed and actively transcribed genes in yeast.

    abstract::Nucleotide excision repair (NER) is a conserved DNA repair mechanism capable of removing a variety of helix-distorting DNA lesions. Rad26, a member of the Swi2/Snf2 superfamily of proteins, has been shown to be involved in a specialized NER process called transcription coupled NER. Rad16, another member of the same pr...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.05.005

    authors: Li S,Ding B,LeJeune D,Ruggiero C,Chen X,Smerdon MJ

    更新日期:2007-11-01 00:00:00

  • Constitutive and regulated expression of the mouse Dinb (Polkappa) gene encoding DNA polymerase kappa.

    abstract::A recently discovered group of novel polymerases are characterized by significantly reduced fidelity of DNA synthesis in vitro. This feature is consistent with the relaxed fidelity required for the replicative bypass of various types of base damage that frequently block high fidelity replicative polymerases. The prese...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00189-1

    authors: Velasco-Miguel S,Richardson JA,Gerlach VL,Lai WC,Gao T,Russell LD,Hladik CL,White CL,Friedberg EC

    更新日期:2003-01-02 00:00:00

  • Regulation of UV-induced DNA damage response by ubiquitylation.

    abstract::Like many other cellular processes, regulation of the DNA damage response (DDR) is regulated at different levels, ranging from transcriptional control to an array of distinct post-translational modifications. Involvement of ubiquitylation and the ubiquitin proteasome system in adjusting DDR are such protein modificati...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2007.01.012

    authors: Bergink S,Jaspers NG,Vermeulen W

    更新日期:2007-09-01 00:00:00

  • Determinants of sequence-specificity within human AID and APOBEC3G.

    abstract::Human APOBEC3G (A3G) and activation-induced deaminase (AID) belong to a family of DNA-cytosine deaminases. While A3G targets the last C in a run of C's, AID targets C in the consensus sequence WRC (W is A or T and R is a purine). Guided by the structures of the A3G carboxyl-terminal catalytic domain (A3G-CTD), we iden...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2010.02.010

    authors: Carpenter MA,Rajagurubandara E,Wijesinghe P,Bhagwat AS

    更新日期:2010-05-04 00:00:00

  • XRCC1 protein; Form and function.

    abstract::The human gene that encodes XRCC1 was cloned nearly thirty years ago but experimental analysis of this fascinating protein is still unveiling new insights into the DNA damage response. XRCC1 is a molecular scaffold protein that interacts with multiple enzymatic components of DNA single-strand break repair (SSBR) inclu...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2019.102664

    authors: Caldecott KW

    更新日期:2019-09-01 00:00:00

  • Histone H2A phosphorylation and H3 methylation are required for a novel Rad9 DSB repair function following checkpoint activation.

    abstract::In budding yeast, the Rad9 protein is an important player in the maintenance of genomic integrity and has a well-characterised role in DNA damage checkpoint activation. Recently, roles for different post-translational histone modifications in the DNA damage response, including H2A serine 129 phosphorylation and H3 lys...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2006.03.005

    authors: Toh GW,O'Shaughnessy AM,Jimeno S,Dobbie IM,Grenon M,Maffini S,O'Rorke A,Lowndes NF

    更新日期:2006-06-10 00:00:00

  • Examining the potential role of DNA polymerases eta and zeta in triplet repeat instability in yeast.

    abstract::Triplet repeats undergo frequent mutations in human families afflicted with certain neurodegenerative diseases and also in model organisms. Although the molecular mechanisms of triplet repeat instability are still being identified, it is likely that aberrant DNA synthesis plays an important role. Many DNA polymerases ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00095-2

    authors: Dixon MJ,Lahue RS

    更新日期:2002-09-04 00:00:00

  • Checkpoint adaptation in recombination-deficient cells drives aneuploidy and resistance to genotoxic agents.

    abstract::Human cancers frequently harbour mutations in DNA repair genes, rendering the use of DNA damaging agents as an effective therapeutic intervention. As therapy-resistant cells often arise, it is important to better understand the molecular pathways that drive resistance in order to facilitate the eventual targeting of s...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2020.102939

    authors: Vydzhak O,Bender K,Klermund J,Busch A,Reimann S,Luke B

    更新日期:2020-11-01 00:00:00

  • Dynamics of enzymatic interactions during short flap human Okazaki fragment processing by two forms of human DNA polymerase δ.

    abstract::Lagging strand DNA replication requires the concerted actions of DNA polymerase δ, Fen1 and DNA ligase I for the removal of the RNA/DNA primers before ligation of Okazaki fragments. To better understand this process in human cells, we have reconstituted Okazaki fragment processing by the short flap pathway in vitro wi...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.08.008

    authors: Lin SH,Wang X,Zhang S,Zhang Z,Lee EY,Lee MY

    更新日期:2013-11-01 00:00:00

  • DNA polymerase iota-dependent translesion replication of uracil containing cyclobutane pyrimidine dimers.

    abstract::Analysis of the spectrum of UV-induced mutations generated in synchronized wild-type S-phase cells reveals that only approximately 25% of mutations occur at thymine (T), whilst 75% are targeted to cytosine (C). The mutational spectra changes dramatically in XP-V cells, devoid of poleta, where approximately 45% of muta...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2005.09.011

    authors: Vaisman A,Takasawa K,Iwai S,Woodgate R

    更新日期:2006-02-03 00:00:00

  • Frameshifts and deletions during in vitro translesion synthesis past Pt-DNA adducts by DNA polymerases beta and eta.

    abstract::DNA polymerases beta (pol beta ) and eta (pol eta ) are the only two eukaryotic polymerases known to efficiently bypass cisplatin and oxaliplatin adducts in vitro. Frameshift errors are an important aspect of mutagenesis. We have compared the types of frameshifts that occur during translesion synthesis past cisplatin ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00150-7

    authors: Bassett E,Vaisman A,Tropea KA,McCall CM,Masutani C,Hanaoka F,Chaney SG

    更新日期:2002-12-05 00:00:00