DNA polymerase iota-dependent translesion replication of uracil containing cyclobutane pyrimidine dimers.

Abstract:

:Analysis of the spectrum of UV-induced mutations generated in synchronized wild-type S-phase cells reveals that only approximately 25% of mutations occur at thymine (T), whilst 75% are targeted to cytosine (C). The mutational spectra changes dramatically in XP-V cells, devoid of poleta, where approximately 45% of mutations occur at Ts and approximately 55% at Cs. At the present time, it is unclear whether the C-->T mutations actually represent true misincorporations opposite C, or perhaps occur as the result of the correct incorporation of adenine (A) opposite a C in a UV-photoproduct that had undergone deamination to uracil (U). In order to assess the role that human poliota might play, if any, in the replicative bypass of such UV-photoproducts, we have analyzed the efficiency and fidelity of pol iota-dependent bypass of a T-U cyclobutane pyrimidine dimer (CPD) in vitro. Interestingly, pol iota-dependent bypass of a T-U CPD occurs more efficiently than that of a corresponding T-T CPD. Guanine (G) was misincorporated opposite the 3'U of the T-U CPD only two-fold less frequently than the correct Watson-Crick base, A. While pol iota generally extended the G:3'U-CPD mispairs less efficiently than the correctly paired primer, pol iota-dependent extension was equal to, or greater than that observed with human pols eta and kappa and S. cerevisiae pol zeta under the same assay conditions. Thus, we hypothesize that the ability of pol iota to bypass T-U CPDs through the frequent misincorporation of G opposite the 3'U of the CPD, may provide a mechanism whereby human cells can decrease the mutagenic potential of these lesions.

journal_name

DNA Repair (Amst)

journal_title

DNA repair

authors

Vaisman A,Takasawa K,Iwai S,Woodgate R

doi

10.1016/j.dnarep.2005.09.011

keywords:

subject

Has Abstract

pub_date

2006-02-03 00:00:00

pages

210-8

issue

2

eissn

1568-7864

issn

1568-7856

pii

S1568-7864(05)00261-2

journal_volume

5

pub_type

杂志文章
  • Bypass of N²-ethylguanine by human DNA polymerase κ.

    abstract::The efficiency and fidelity of nucleotide incorporation and next-base extension by DNA polymerase (pol) κ past N(2)-ethyl-Gua were measured using steady-state and rapid kinetic analyses. DNA pol κ incorporated nucleotides and extended 3' termini opposite N(2)-ethyl-Gua with measured efficiencies and fidelities similar...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2010.09.007

    authors: Pence MG,Blans P,Zink CN,Fishbein JC,Perrino FW

    更新日期:2011-01-02 00:00:00

  • Dysfunctional mammalian telomeres join with DNA double-strand breaks.

    abstract::In addition to joining broken DNA strands, several non-homologous end-joining (NHEJ) proteins have a second seemingly antithetical role in constructing functional telomeres, the nucleoprotein structures at the termini of linear eukaryotic chromosomes that prevent joining between natural chromosome ends. Although NHEJ ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2003.11.007

    authors: Bailey SM,Cornforth MN,Ullrich RL,Goodwin EH

    更新日期:2004-04-01 00:00:00

  • Arsenic-induced Mre11 phosphorylation is cell cycle-dependent and defective in NBS cells.

    abstract::Cancer-prone diseases ataxia-telangiectasia (AT), Nijmegen breakage syndrome (NBS) and ataxia-telangiectasia-like disorder (ATLD) are defective in the repair of DNA double-stranded break (DSB). On the other hand, arsenic (As) has been reported to cause DSB and to be involved in the occurrence of skin, lung and bladder...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(01)00009-x

    authors: Yuan SS,Su JH,Hou MF,Yang FW,Zhao S,Lee EY

    更新日期:2002-02-28 00:00:00

  • Influence of XPB helicase on recruitment and redistribution of nucleotide excision repair proteins at sites of UV-induced DNA damage.

    abstract::The XPB DNA helicase, a subunit of the basal transcription factor TFIIH, is also involved in nucleotide excision repair (NER). We examined recruitment of NER proteins in XP-B cells from patients with mild or severe xeroderma pigmentosum (XP) having different XPB mutations using local UV-irradiation through filters wit...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.03.025

    authors: Oh KS,Imoto K,Boyle J,Khan SG,Kraemer KH

    更新日期:2007-09-01 00:00:00

  • Poetry in motion: Increased chromosomal mobility after DNA damage.

    abstract::Double-strand breaks (DSBs) are among the most lethal DNA lesions, and a variety of pathways have evolved to manage their repair in a timely fashion. One such pathway is homologous recombination (HR), in which information from an undamaged donor site is used as a template for repair. Although many of the biochemical s...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2017.06.012

    authors: Smith MJ,Rothstein R

    更新日期:2017-08-01 00:00:00

  • Cross-species inhibition of dUTPase via the Staphylococcal Stl protein perturbs dNTP pool and colony formation in Mycobacterium.

    abstract::Proteins responsible for the integrity of the genome are often used targets in drug therapies against various diseases. The inhibitors of these proteins are also important to study the pathways in genome integrity maintenance. A prominent example is Ugi, a well known cross-species inhibitor protein of the enzyme uraci...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2015.03.005

    authors: Hirmondó R,Szabó JE,Nyíri K,Tarjányi S,Dobrotka P,Tóth J,Vértessy BG

    更新日期:2015-06-01 00:00:00

  • Accumulation of 8-oxo-deoxyguanosine in cardiovascular tissues with the development of hypertension.

    abstract::Accumulation of 8-oxo-7,8-dihydro-2'-deoxyguanosine (8-oxo-dG) in DNA is associated with mutagenesis and cell death. Little attention has been given to the biological significance of 8-oxo-dG accumulation in cardiovascular tissues during the different stage of hypertension and its prevention. We thus investigated the ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.01.003

    authors: Ohtsubo T,Ohya Y,Nakamura Y,Kansui Y,Furuichi M,Matsumura K,Fujii K,Iida M,Nakabeppu Y

    更新日期:2007-06-01 00:00:00

  • The Rad52-Rad59 complex interacts with Rad51 and replication protein A.

    abstract::The RAD52 gene is essential for homology-dependent repair of double-strand breaks in Saccharomyces cerevisiae. Rad52 forms complexes with Rad51, replication protein A (RPA) or Rad59 and its presence is essential for the formation of Rad51-Rad52-Rad59 and RPA-Rad52-Rad59 complexes. The N-terminal region of Rad52, which...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(03)00121-6

    authors: Davis AP,Symington LS

    更新日期:2003-10-07 00:00:00

  • The involvement of key DNA repair pathways in the formation of chromosome rearrangements in embryonic stem cells.

    abstract::It is vital that embryonic stem (ES) cells, which give rise to the diverse tissues of the mature organism, maintain genetic stability. To understand mechanisms for the prevention and causation of chromosomal instability, we have used spectral karyotyping (SKY) to analyse ES cells from wild-type and repair-gene knockou...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2005.05.005

    authors: Griffin C,Waard Hd,Deans B,Thacker J

    更新日期:2005-08-15 00:00:00

  • The role of DNA repair in brain related disease pathology.

    abstract::Oxidative DNA damage is implicated in brain aging, neurodegeneration and neurological diseases. Damage can be created by normal cellular metabolism, which accumulates with age, or by acute cellular stress conditions which create bursts of oxidative damage. Brain cells have a particularly high basal level of metabolic ...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2013.04.010

    authors: Canugovi C,Misiak M,Ferrarelli LK,Croteau DL,Bohr VA

    更新日期:2013-08-01 00:00:00

  • DNA double-strand breaks as drivers of neural genomic change, function, and disease.

    abstract::Early work from about two decades ago implicated DNA double-strand break (DSB) formation and repair in neuronal development. Findings emerging from recent studies of DSBs in proliferating neural progenitors and in mature, non-dividing neurons suggest important roles of DSBs in brain physiology, aging, cancer, psychiat...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2018.08.019

    authors: Alt FW,Schwer B

    更新日期:2018-11-01 00:00:00

  • Apex1 can cleave complex clustered DNA lesions in cells.

    abstract::Current data indicate that clustered DNA damage generated by ionizing radiation contains 2-5 damages within 20 bps. The complexity of clustered damage is also believed to increase as the linear energy transfer of the radiation increases. Complex lesions are therefore biologically relevant especially with the use of ca...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2009.08.008

    authors: Malyarchuk S,Castore R,Harrison L

    更新日期:2009-12-03 00:00:00

  • Archaeal DNA uracil repair via direct strand incision: A minimal system reconstituted from purified components.

    abstract::Hydrolytic deamination of DNA cytosine residues results in U/G mispairs, pre-mutagenic lesions threatening long-term genetic stability. Hence, DNA uracil repair is ubiquitous throughout all extant life forms and base excision repair, triggered by a uracil DNA glycosylase (UDG), is the mechanistic paradigm adopted, as ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2010.01.004

    authors: Schomacher L,Schürer KA,Ciirdaeva E,McDermott P,Chong JP,Kramer W,Fritz HJ

    更新日期:2010-04-04 00:00:00

  • Mysterious and fascinating: DNA polymerase ɩ remains enigmatic 20 years after its discovery.

    abstract::With the publication of the first paper describing the biochemical properties of DNA polymerase iota (polɩ), the question immediately arose as to why cells harbor such a low-fidelity enzyme which often violates the Watson-Crick base pairing rules? Yet 20 years after its discovery, the cellular function of polɩ remains...

    journal_title:DNA repair

    pub_type: 杂志文章,评审

    doi:10.1016/j.dnarep.2020.102914

    authors: Vaisman A,Woodgate R

    更新日期:2020-09-01 00:00:00

  • Promoter methylation of O(6)-methylguanine-DNA-methyltransferase in lung cancer is regulated by p53.

    abstract::Methylation of the O(6)-methylguanine-DNA-methyltransferase (MGMT) promoter is associated with G:C to A:T transitions in the p53 gene in various human cancers, including lung cancer. In tumors with p53 mutation, MGMT promoter methylation is more common in advanced tumors than in early tumors. However, in tumors with w...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.04.016

    authors: Lai JC,Cheng YW,Goan YG,Chang JT,Wu TC,Chen CY,Lee H

    更新日期:2008-08-02 00:00:00

  • Determinants of sequence-specificity within human AID and APOBEC3G.

    abstract::Human APOBEC3G (A3G) and activation-induced deaminase (AID) belong to a family of DNA-cytosine deaminases. While A3G targets the last C in a run of C's, AID targets C in the consensus sequence WRC (W is A or T and R is a purine). Guided by the structures of the A3G carboxyl-terminal catalytic domain (A3G-CTD), we iden...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2010.02.010

    authors: Carpenter MA,Rajagurubandara E,Wijesinghe P,Bhagwat AS

    更新日期:2010-05-04 00:00:00

  • Function and biochemical characterization of RecJ in Deinococcus radiodurans.

    abstract::The single-stranded DNA-specific nuclease RecJ is found in most bacteria where it is involved in the RecFOR double-stranded break (DSBs) repair pathway. DSBs repair mainly occurs via the RecFOR pathway in Deinococcus radiodurans, a well-known radiation-resistant bacterium. A recJ null mutant was constructed to investi...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2011.11.008

    authors: Jiao J,Wang L,Xia W,Li M,Sun H,Xu G,Tian B,Hua Y

    更新日期:2012-04-01 00:00:00

  • Lack of CAK complex accumulation at DNA damage sites in XP-B and XP-B/CS fibroblasts reveals differential regulation of CAK anchoring to core TFIIH by XPB and XPD helicases during nucleotide excision repair.

    abstract::Transcription factor II H (TFIIH) is composed of core TFIIH and Cdk-activating kinase (CAK) complexes. Besides transcription, TFIIH also participates in nucleotide excision repair (NER), verifying DNA lesions through its helicase components XPB and XPD. The assembly state of TFIIH is known to be affected by truncation...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2012.09.003

    authors: Zhu Q,Wani G,Sharma N,Wani A

    更新日期:2012-12-01 00:00:00

  • Endogenous levels of Rad51 and Brca2 are required for homologous recombination and regulated by homeostatic re-balancing.

    abstract::Stable expression of Rad51 siRNA was used to generate mouse hybridoma cell lines in which endogenous Rad51 levels were depleted by as much as 60%. Stable Rad51 knockdowns feature reduced homologous recombination responses. The relative ease with which stable Rad51 knockdowns were recovered was surprising, given the em...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.10.006

    authors: Magwood AC,Malysewich MJ,Cealic I,Mundia MM,Knapp J,Baker MD

    更新日期:2013-12-01 00:00:00

  • Mutational studies of Pa-AGOG DNA glycosylase from the hyperthermophilic crenarchaeon Pyrobaculum aerophilum.

    abstract::In all organisms studied to date, 8-oxoguanine (GO), an important oxidation product of guanine, is removed by highly conserved GO DNA glycosylases. The hyperthermophilic crenarchaeon Pyrobaculum aerophilum encodes a GO DNA glycosylase, Pa-AGOG (Archaeal GO DNA glycosylase) which has become the founding member of a new...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2009.03.009

    authors: Lingaraju GM,Prota AE,Winkler FK

    更新日期:2009-07-04 00:00:00

  • The roles of Rad16 and Rad26 in repairing repressed and actively transcribed genes in yeast.

    abstract::Nucleotide excision repair (NER) is a conserved DNA repair mechanism capable of removing a variety of helix-distorting DNA lesions. Rad26, a member of the Swi2/Snf2 superfamily of proteins, has been shown to be involved in a specialized NER process called transcription coupled NER. Rad16, another member of the same pr...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.05.005

    authors: Li S,Ding B,LeJeune D,Ruggiero C,Chen X,Smerdon MJ

    更新日期:2007-11-01 00:00:00

  • The mechanism of human tyrosyl-DNA phosphodiesterase 1 in the cleavage of AP site and its synthetic analogs.

    abstract::The mechanism of hydrolysis of the apurinic/apyrimidinic (AP) site and its synthetic analogs by using tyrosyl-DNA phosphodiesterase 1 (Tdp1) was analyzed. Tdp1 catalyzes the cleavage of AP site and the synthetic analog of the AP site, 3-hydroxy-2(hydroxymethyl)-tetrahydrofuran (THF), in DNA by hydrolysis of the phosph...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.09.008

    authors: Lebedeva NA,Rechkunova NI,Ishchenko AA,Saparbaev M,Lavrik OI

    更新日期:2013-12-01 00:00:00

  • Developmental retinal apoptosis in Ku86-/- mice.

    abstract::The nonhomologous DNA end-joining pathway (NHEJ), a major pathway for repairing DNA double-strand breaks (DSBs), is essential for maintaining genomic stability. Knockout animals for components in this pathway demonstrate a distinct pattern of cell death in the developing brain. Here we demonstrate that cell death is a...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2003.08.011

    authors: Karanjawala ZE,Hinton DR,Oh E,Hsieh CL,Lieber MR

    更新日期:2003-12-09 00:00:00

  • Monitoring base excision repair in Chlamydomonas reinhardtii cell extracts.

    abstract::Base excision repair (BER) is a major defense pathway against spontaneous DNA damage. This multistep process is initiated by DNA glycosylases that recognise and excise the damaged base, and proceeds by the concerted action of additional proteins that perform incision of the abasic site, gap filling and ligation. BER h...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2018.02.011

    authors: Morales-Ruiz T,Romero-Valenzuela ÁC,Vázquez-Grande VM,Roldán-Arjona T,Ariza RR,Córdoba-Cañero D

    更新日期:2018-05-01 00:00:00

  • Differences in DNA double strand breaks repair in male germ cell types: lessons learned from a differential expression of Mdc1 and 53BP1.

    abstract::In male germ cells the repair of DNA double strand breaks (DSBs) differs from that described for somatic cell lines. Irradiation induced immunofluorescent foci (IRIF's) signifying a double strand DNA breaks, were followed in spermatogenic cells up to 16 h after the insult. Foci were characterised for Mdc1, 53BP1 and R...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2007.02.011

    authors: Ahmed EA,van der Vaart A,Barten A,Kal HB,Chen J,Lou Z,Minter-Dykhouse K,Bartkova J,Bartek J,de Boer P,de Rooij DG

    更新日期:2007-09-01 00:00:00

  • In vitro and in vivo studies of MutS, MutL and MutH mutants: correlation of mismatch repair and DNA recombination.

    abstract::We have used the recently determined crystal structures of Escherichia coli (E. coli) MutS, MutL and MutH to guide construction of 47 amino-acid substitutions in these proteins and analyzed their behavior in mismatch repair and recombination in vitro and in vivo. We find that the active site of the MutH endonuclease i...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/s1568-7864(02)00245-8

    authors: Junop MS,Yang W,Funchain P,Clendenin W,Miller JH

    更新日期:2003-04-02 00:00:00

  • Histone H2A phosphorylation and H3 methylation are required for a novel Rad9 DSB repair function following checkpoint activation.

    abstract::In budding yeast, the Rad9 protein is an important player in the maintenance of genomic integrity and has a well-characterised role in DNA damage checkpoint activation. Recently, roles for different post-translational histone modifications in the DNA damage response, including H2A serine 129 phosphorylation and H3 lys...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2006.03.005

    authors: Toh GW,O'Shaughnessy AM,Jimeno S,Dobbie IM,Grenon M,Maffini S,O'Rorke A,Lowndes NF

    更新日期:2006-06-10 00:00:00

  • Slow accumulation of mutations in Xpc-/- mice upon induction of oxidative stress.

    abstract::XPC is one of the key DNA damage recognition proteins in the global genome repair route of the nucleotide excision repair (NER) pathway. Previously, we demonstrated that NER-deficient mouse models Xpa(-/-) and Xpc(-/-) exhibit a divergent spontaneous tumor spectrum and proposed that XPC might be functionally involved ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2013.08.019

    authors: Melis JP,Kuiper RV,Zwart E,Robinson J,Pennings JL,van Oostrom CT,Luijten M,van Steeg H

    更新日期:2013-12-01 00:00:00

  • Impaired spermatogenesis and elevated spontaneous tumorigenesis in xeroderma pigmentosum group A gene (Xpa)-deficient mice.

    abstract::We have reported that xeroderma pigmentosum group A (Xpa) gene-knockout mice [Xpa (-/-) mice] are deficient in nucleotide excision repair (NER) and highly sensitive to UV-induced skin carcinogenesis. Although xeroderma pigmentosum group A patients show growth retardation, immature sexual development, and neurological ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.08.003

    authors: Nakane H,Hirota S,Brooks PJ,Nakabeppu Y,Nakatsu Y,Nishimune Y,Iino A,Tanaka K

    更新日期:2008-12-01 00:00:00

  • Induction of intrachromosomal homologous recombination in human cells by raltitrexed, an inhibitor of thymidylate synthase.

    abstract::Thymidylate deprivation brings about "thymineless death" in prokaryotes and eukaryotes. Although the precise mechanism for thymineless death has remained elusive, inhibition of the enzyme thymidylate synthase (TS), which catalyzes the de novo synthesis of TMP, has served for many years as a basis for chemotherapeutic ...

    journal_title:DNA repair

    pub_type: 杂志文章

    doi:10.1016/j.dnarep.2008.06.006

    authors: Waldman BC,Wang Y,Kilaru K,Yang Z,Bhasin A,Wyatt MD,Waldman AS

    更新日期:2008-10-01 00:00:00