Abstract:
:Most models of cancer cell population expansion assume exponential growth kinetics at low cell densities, with deviations to account for observed slowing of growth rate only at higher densities due to limited resources such as space and nutrients. However, recent preclinical and clinical observations of tumor initiation or recurrence indicate the presence of tumor growth kinetics in which growth rates scale positively with cell numbers. These observations are analogous to the cooperative behavior of species in an ecosystem described by the ecological principle of the Allee effect. In preclinical and clinical models, however, tumor growth data are limited by the lower limit of detection (i.e., a measurable lesion) and confounding variables, such as tumor microenvironment, and immune responses may cause and mask deviations from exponential growth models. In this work, we present alternative growth models to investigate the presence of an Allee effect in cancer cells seeded at low cell densities in a controlled in vitro setting. We propose a stochastic modeling framework to disentangle expected deviations due to small population size stochastic effects from cooperative growth and use the moment approach for stochastic parameter estimation to calibrate the observed growth trajectories. We validate the framework on simulated data and apply this approach to longitudinal cell proliferation data of BT-474 luminal B breast cancer cells. We find that cell population growth kinetics are best described by a model structure that considers the Allee effect, in that the birth rate of tumor cells increases with cell number in the regime of small population size. This indicates a potentially critical role of cooperative behavior among tumor cells at low cell densities with relevance to early stage growth patterns of emerging and relapsed tumors.
journal_name
PLoS Bioljournal_title
PLoS biologyauthors
Johnson KE,Howard G,Mo W,Strasser MK,Lima EABF,Huang S,Brock Adoi
10.1371/journal.pbio.3000399subject
Has Abstractpub_date
2019-08-05 00:00:00pages
e3000399issue
8eissn
1544-9173issn
1545-7885pii
PBIOLOGY-D-19-00785journal_volume
17pub_type
杂志文章相关文献
PLOS BIOLOGY文献大全abstract::Better understanding of feeding behaviour will be vital in reducing obesity and metabolic syndrome, but we lack a standard model that captures the complexity of feeding behaviour. We construct an accurate stochastic model of rodent feeding at the bout level in order to perform quantitative behavioural analysis. Analys...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000482
更新日期:2019-12-05 00:00:00
abstract::Malaria parasite transmission requires differentiation of male and female gametocytes into gametes within a mosquito following a blood meal. A mosquito-derived molecule, xanthurenic acid (XA), can trigger gametogenesis, but the signalling events controlling this process in the human malaria parasite Plasmodium falcipa...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0060139
更新日期:2008-06-03 00:00:00
abstract::During the entry process, the human immunodeficiency virus type 1 (HIV-1) envelope glycoprotein (Env) trimer undergoes a sequence of conformational changes triggered by both CD4 and coreceptor engagement. Resolving the conformation of these transient entry intermediates has proven challenging. Here, we fine-mapped the...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000114
更新日期:2019-01-16 00:00:00
abstract::The prospects for the success of malaria control depend, in part, on the basic reproductive number for malaria, R0. Here, we estimate R0 in a novel way for 121 African populations, and thereby increase the number of R0 estimates for malaria by an order of magnitude. The estimates range from around one to more than 3,0...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0050042
更新日期:2007-03-01 00:00:00
abstract::Modification of proteins by SUMO is essential for the maintenance of genome integrity. During DNA replication, the Mms21-branch of the SUMO pathway counteracts recombination intermediates at damaged replication forks, thus facilitating sister chromatid disjunction. The Mms21 SUMO ligase docks to the arm region of the ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002089
更新日期:2015-03-12 00:00:00
abstract::In Amazonian tropical forests, recent studies have reported increases in aboveground biomass and in primary productivity, as well as shifts in plant species composition favouring fast-growing species over slow-growing ones. This pervasive alteration of mature tropical forests was attributed to global environmental cha...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0060045
更新日期:2008-03-04 00:00:00
abstract::Cellular aging, a progressive functional decline driven by damage accumulation, often culminates in the mortality of a cell lineage. Certain lineages, however, are able to sustain long-lasting immortality, as prominently exemplified by stem cells. Here, we show that Escherichia coli cell lineages exhibit comparable pa...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000266
更新日期:2019-05-23 00:00:00
abstract::Ribosome biogenesis is a major energy-consuming process in the cell that has to be rapidly down-regulated in response to stress or nutrient depletion. The target of rapamycin 1 (Tor1) pathway regulates synthesis of ribosomal RNA (rRNA) at the level of transcription initiation. It remains unclear whether ribosome bioge...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.2000245
更新日期:2017-03-10 00:00:00
abstract::To successfully negotiate a complex environment, an animal must control the timing of motor behaviors in coordination with dynamic sensory information. Here, we report on adaptive temporal control of vocal-motor behavior in an echolocating bat, Eptesicus fuscus, as it captured tethered insects close to background vege...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0040079
更新日期:2006-04-01 00:00:00
abstract::RNA interference is triggered by double-stranded RNA that is processed into small interfering RNAs (siRNAs) by Dicer enzyme. Endogenously, RNA interference triggers are created from small noncoding RNAs called microRNAs (miRNAs). RNA-induced silencing complexes (RISC) in human cells can be programmed by exogenously in...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0040210
更新日期:2006-07-01 00:00:00
abstract::The 70 kDa heat shock protein (HSP70) family of chaperones are the front line of protection from stress-induced misfolding and aggregation of polypeptides in most organisms and are responsible for promoting the stability, folding, and degradation of clients to maintain cellular protein homeostasis. Here, we demonstrat...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000606
更新日期:2020-07-20 00:00:00
abstract::Head and neck squamous cell carcinomas (HNSCCs) are characterized by outstanding molecular heterogeneity that results in severe therapy resistance and poor clinical outcome. Inter- and intratumoral heterogeneity in epithelial-mesenchymal transition (EMT) was recently revealed as a major parameter of poor clinical outc...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.2006624
更新日期:2018-09-27 00:00:00
abstract::During biogenesis of the 40S and 60S ribosomal subunits, the pre-40S particles are exported to the cytoplasm prior to final cleavage of the 20S pre-rRNA to mature 18S rRNA. Amongst the factors involved in this maturation step, Fap7 is unusual, as it both interacts with ribosomal protein Rps14 and harbors adenylate kin...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001860
更新日期:2014-05-13 00:00:00
abstract::The RecA protein forms nucleoprotein filaments on DNA, and individual monomers within the filaments hydrolyze ATP. Assembly and disassembly of filaments are both unidirectional, occurring on opposite filament ends, with disassembly requiring ATP hydrolysis. When filaments form on duplex DNA, RecA protein exhibits a fu...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0030052
更新日期:2005-02-01 00:00:00
abstract::Antibiotic combination therapies are important for the efficient treatment of many types of infections, including those caused by antibiotic-resistant pathogens. Combination treatment strategies are typically used under the assumption that synergies are conserved across species and strains, even though recent results ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000856
更新日期:2020-09-17 00:00:00
abstract::Aminoacyl-tRNA synthetases (aaRSs) are well studied for their role in binding and charging tRNAs with cognate amino acids. Recent RNA interactome studies had suggested that these enzymes can also bind polyadenylated RNAs. Here, we explored the mRNA repertoire bound by several yeast aaRSs. RNA immunoprecipitation (RIP)...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000274
更新日期:2019-05-17 00:00:00
abstract::Pollen tube (PT) reception in flowering plants describes the crosstalk between the male and female gametophytes upon PT arrival at the synergid cells of the ovule. It leads to PT growth arrest, rupture, and sperm cell release, and is thus essential to ensure double fertilization. Here, we describe TURAN (TUN) and EVAN...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002139
更新日期:2015-04-28 00:00:00
abstract::The Animal Research: Reporting of In Vivo Experiments (ARRIVE) guidelines were developed to address the lack of reproducibility in biomedical animal studies and improve the communication of research findings. While intended to guide the preparation of peer-reviewed manuscripts, the principles of transparent reporting ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002151
更新日期:2015-05-20 00:00:00
abstract::The mechanism by which a complex auditory scene is parsed into coherent objects depends on poorly understood interactions between task-driven and stimulus-driven attentional processes. We illuminate these interactions in a simultaneous behavioral-neurophysiological study in which we manipulate participants' attention ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1000129
更新日期:2009-06-01 00:00:00
abstract::Although the developmental principles of sensory and cognitive processing have been extensively investigated, their synergy has been largely neglected. During early life, most sensory systems are still largely immature. As a notable exception, the olfactory system is functional at birth, controlling mother-offspring i...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.2006994
更新日期:2019-01-31 00:00:00
abstract::Since 1960, magnetic fields have been discussed as Zeitgebers for circadian clocks, but the mechanism by which clocks perceive and process magnetic information has remained unknown. Recently, the radical-pair model involving light-activated photoreceptors as magnetic field sensors has gained considerable support, and ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1000086
更新日期:2009-04-07 00:00:00
abstract::Rapid colour change is a remarkable natural phenomenon that has evolved in several vertebrate and invertebrate lineages. The two principal explanations for the evolution of this adaptive strategy are (1) natural selection for crypsis (camouflage) against a range of different backgrounds and (2) selection for conspicuo...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0060025
更新日期:2008-01-01 00:00:00
abstract::Interactions between hosts and parasites provide an ongoing source of selection that promotes the evolution of a variety of features in the interacting species. Here, we use a genetically explicit mathematical model to explore how patterns of gene expression evolve at genetic loci responsible for host resistance and p...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0030203
更新日期:2005-07-01 00:00:00
abstract::This speculative Essay explores the consequences of the imagined premature death of Oswald Avery, who in 1944 provided evidence that genes are made of DNA. Four imaginary alternate routes to the genetic function of DNA are outlined, each of which highlights different aspects of the actual process of discovery. ...
journal_title:PLoS biology
pub_type: 传,历史文章,杂志文章
doi:10.1371/journal.pbio.2001197
更新日期:2016-12-22 00:00:00
abstract::During pregnancy, the ETS transcription factor ELF5 establishes the milk-secreting alveolar cell lineage by driving a cell fate decision of the mammary luminal progenitor cell. In breast cancer, ELF5 is a key transcriptional determinant of tumor subtype and has been implicated in the development of insensitivity to an...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002330
更新日期:2015-12-30 00:00:00
abstract::In photosynthetic organisms, feedback dissipation of excess absorbed light energy balances harvesting of light with metabolic energy consumption. This mechanism prevents photodamage caused by reactive oxygen species produced by the reaction of chlorophyll (Chl) triplet states with O₂. Plants have been found to perform...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1000577
更新日期:2011-01-18 00:00:00
abstract::In an age of free international shipments of mail-ordered seeds and plants, more policing will not stop the global migration of hitchhiking pests. The solution is in a preemptive response based on an internationally coordinated genomic deployment of global biodiversity in the largest breeding project since the "Garden...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002438
更新日期:2016-04-19 00:00:00
abstract::[This corrects the article DOI: 10.1371/journal.pbio.1001326.]. ...
journal_title:PLoS biology
pub_type: 杂志文章,已发布勘误
doi:10.1371/journal.pbio.1002616
更新日期:2017-12-11 00:00:00
abstract::We present Knowledge Engine for Genomics (KnowEnG), a free-to-use computational system for analysis of genomics data sets, designed to accelerate biomedical discovery. It includes tools for popular bioinformatics tasks such as gene prioritization, sample clustering, gene set analysis, and expression signature analysis...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000583
更新日期:2020-01-23 00:00:00
abstract::A key component of working memory is the ability to remember multiple items simultaneously. To understand how the human brain maintains multiple items in memory, we examined direct brain recordings of neural oscillations from neurosurgical patients as they performed a working memory task. We analyzed the data to ident...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.2003805
更新日期:2018-08-15 00:00:00