Abstract:
:The RecA protein forms nucleoprotein filaments on DNA, and individual monomers within the filaments hydrolyze ATP. Assembly and disassembly of filaments are both unidirectional, occurring on opposite filament ends, with disassembly requiring ATP hydrolysis. When filaments form on duplex DNA, RecA protein exhibits a functional state comparable to the state observed during active DNA strand exchange. RecA filament state was monitored with a coupled spectrophotometric assay for ATP hydrolysis, with changes fit to a mathematical model for filament disassembly. At 37 degrees C, monomers within the RecA-double-stranded DNA (dsDNA) filaments hydrolyze ATP with an observed k(cat) of 20.8 +/- 1.5 min(-1). Under the same conditions, the rate of end-dependent filament disassembly (k(off)) is 123 +/- 16 monomers per minute per filament end. This rate of disassembly requires a tight coupling of the ATP hydrolytic cycles of adjacent RecA monomers. The relationship of k(cat) to k(off) infers a filament state in which waves of ATP hydrolysis move unidirectionally through RecA filaments on dsDNA, with successive waves occurring at intervals of approximately six monomers. The waves move nearly synchronously, each one transiting from one monomer to the next every 0.5 s. The results reflect an organization of the ATPase activity that is unique in filamentous systems, and could be linked to a RecA motor function.
journal_name
PLoS Bioljournal_title
PLoS biologyauthors
Cox JM,Tsodikov OV,Cox MMdoi
10.1371/journal.pbio.0030052keywords:
subject
Has Abstractpub_date
2005-02-01 00:00:00pages
e52issue
2eissn
1544-9173issn
1545-7885journal_volume
3pub_type
杂志文章相关文献
PLOS BIOLOGY文献大全abstract::The evolution of altruism is a fundamental and enduring puzzle in biology. In a seminal paper Hamilton showed that altruism can be selected for when rb - c > 0, where c is the fitness cost to the altruist, b is the fitness benefit to the beneficiary, and r is their genetic relatedness. While many studies have provided...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1000615
更新日期:2011-05-01 00:00:00
abstract::Cell differentiation is remarkably stable but can be reversed by somatic cell nuclear transfer, cell fusion, and iPS. Nuclear transfer to amphibian oocytes provides a special opportunity to test transcriptional reprogramming without cell division. We show here that, after nuclear transfer to amphibian oocytes, mitotic...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001914
更新日期:2014-07-29 00:00:00
abstract::G protein-coupled receptors (GPCRs) are the most widely targeted gene family for Food and Drug Administration (FDA)-approved drugs. To assess possible roles for GPCRs in cancer, we analyzed The Cancer Genome Atlas (TCGA) data for mRNA expression, mutations, and copy number variation (CNV) in 20 categories and 45 subty...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000434
更新日期:2019-11-25 00:00:00
abstract::How should funding agencies enable researchers to explore high-risk but potentially high-reward science? One model that appears to work is the NSF-funded synthesis center, an incubator for community-led, innovative science. ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001468
更新日期:2013-01-01 00:00:00
abstract::Understanding the molecular events that underlie the evolution of morphological diversity is a major challenge in biology. Here, to identify genes whose expression correlates with species-specific morphologies, we compared transcriptomes of two closely related Hydra species. We find that species-specific differences i...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0060278
更新日期:2008-11-18 00:00:00
abstract::Protein kinase B (PKB/Akt) belongs to the AGC superfamily of related serine/threonine protein kinases. It is a key regulator downstream of various growth factors and hormones and is involved in malignant transformation and chemo-resistance. Full-length PKB protein has not been crystallised, thus studying the molecular...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1000017
更新日期:2009-01-20 00:00:00
abstract::In this Formal Comment the authors respond to objections to their previous Essay, reiterating that comparative linguistics is not an easy undertaking. ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000019
更新日期:2018-09-24 00:00:00
abstract::During quiet resting behavior, involuntary movements are suppressed. Such movement control is attributed to cortico-basal ganglia loops, yet population dynamics within these loops during resting and their relation to involuntary movements are not well characterized. Here, we show by recording cortical and striatal ong...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002582
更新日期:2016-12-06 00:00:00
abstract::A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available this information that maximise its usefulness has become a major effort across the 'omics world. At the heart of this effort is the Genomic Standards Consortium (G...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001088
更新日期:2011-06-01 00:00:00
abstract::A key feature of most social relationships is that we like seeing good things happen to others. Research has implicated the anterior cingulate cortex (ACC) in attaching value to social outcomes. For example, single neurons in macaque ACC selectively code reward delivery to the self, a partner, both monkeys, or neither...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000677
更新日期:2020-06-12 00:00:00
abstract::The COVID-19 pandemic has motivated many open and collaborative analytical research projects with real-world impact. However, despite their value, such activities are generally overlooked by traditional academic metrics. Science is ultimately improved by analytical work, whether ensuring reproducible and well-document...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000913
更新日期:2020-10-16 00:00:00
abstract::The MooSciTIC project is a capacity-building initiative targeting West African research scientists and higher education teachers. The project aimed to improve the self-reliance of researchers and upgrade research practices by providing on-site summer schools on trans-disciplinary topics such as scientific writing, com...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000312
更新日期:2019-06-07 00:00:00
abstract::Morphological development of fungi and their combined production of secondary metabolites are both acting in defence and protection. These processes are mainly coordinated by velvet regulators, which contain a yet functionally and structurally uncharacterized velvet domain. Here we demonstrate that the velvet domain o...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001750
更新日期:2013-12-01 00:00:00
abstract::[This corrects the article DOI: 10.1371/journal.pbio.2004814.]. ...
journal_title:PLoS biology
pub_type: 杂志文章,已发布勘误
doi:10.1371/journal.pbio.1002619
更新日期:2018-01-25 00:00:00
abstract::The ability to identify and react to novelty within the environment is fundamental to survival. Computational models emphasize the potential role of the hippocampus in novelty detection, its unique anatomical circuitry making it ideally suited to act as a comparator between past and present experience. The hippocampus...
journal_title:PLoS biology
pub_type: 杂志文章,随机对照试验
doi:10.1371/journal.pbio.0040424
更新日期:2006-11-01 00:00:00
abstract::In eukaryotes, the highly conserved U3 small nucleolar RNA (snoRNA) base-pairs to multiple sites in the pre-ribosomal RNA (pre-rRNA) to promote early cleavage and folding events. Binding of the U3 box A region to the pre-rRNA is mutually exclusive with folding of the central pseudoknot (CPK), a universally conserved r...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002083
更新日期:2015-02-24 00:00:00
abstract::Horizontal DNA transfer (HDT) is a pervasive mechanism of diversification in many microbial species, but its primary evolutionary role remains controversial. Much recent research has emphasised the adaptive benefit of acquiring novel DNA, but here we argue instead that intragenomic conflict provides a coherent framewo...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002394
更新日期:2016-03-02 00:00:00
abstract::Hox transcription factors control a number of developmental processes with the help of the PBC class proteins. In vitro analyses have established that the formation of Hox/PBC complexes relies on a short conserved Hox protein motif called the hexapeptide (HX). This paradigm is at the basis of the vast majority of expe...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001351
更新日期:2012-01-01 00:00:00
abstract::The issue of nonreplicable evidence has attracted considerable attention across biomedical and other sciences. This concern is accompanied by an increasing interest in reforming research incentives and practices. How to optimally perform these reforms is a scientific problem in itself, and economics has several scient...
journal_title:PLoS biology
pub_type: 杂志文章,评审
doi:10.1371/journal.pbio.2001846
更新日期:2017-04-26 00:00:00
abstract::The ability of cells to accurately control gene expression levels in response to extracellular cues is limited by the inherently stochastic nature of transcriptional regulation. A change in transcription factor (TF) activity results in changes in the expression of its targets, but the way in which cell-to-cell variabi...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001528
更新日期:2013-01-01 00:00:00
abstract::The function of neuronal networks relies on selective assembly of synaptic connections during development. We examined how synaptic specificity emerges in the pontocerebellar projection. Analysis of axon-target interactions with correlated light-electron microscopy revealed that developing pontine mossy fibers elabora...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1001013
更新日期:2011-02-08 00:00:00
abstract::Kabuki Syndrome patients have a spectrum of congenital disorders, including congenital heart defects, the primary determinant of mortality. Seventy percent of Kabuki Syndrome patients have mutations in the histone methyl-transferase KMT2D. However, the underlying mechanisms that drive these congenital disorders are un...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000087
更新日期:2019-09-03 00:00:00
abstract::Prior studies have shown that disruption of mitochondrial electron transport chain (ETC) function in the nematode Caenorhabditis elegans can result in life extension. Counter to these findings, many mutations that disrupt ETC function in humans are known to be pathologically life-shortening. In this study, we have und...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0050259
更新日期:2007-10-02 00:00:00
abstract::Active sensing involves the fusion of internally generated motor events with external sensation. For rodents, active somatosensation includes scanning the immediate environment with the mystacial vibrissae. In doing so, the vibrissae may touch an object at any angle in the whisk cycle. The representation of touch and ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002253
更新日期:2015-09-22 00:00:00
abstract::Total internal reflection fluorescence microscopy (TIR-FM) has become a powerful tool for studying clathrin-mediated endocytosis. However, due to difficulties in tracking and quantifying their heterogeneous dynamic behavior, detailed analyses have been restricted to a limited number of selected clathrin-coated pits (C...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1000057
更新日期:2009-03-17 00:00:00
abstract::Ribosome biogenesis is a major energy-consuming process in the cell that has to be rapidly down-regulated in response to stress or nutrient depletion. The target of rapamycin 1 (Tor1) pathway regulates synthesis of ribosomal RNA (rRNA) at the level of transcription initiation. It remains unclear whether ribosome bioge...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.2000245
更新日期:2017-03-10 00:00:00
abstract::Blood vascular networks in vertebrates are essential to tissue survival. Establishment of a fully functional vasculature is complex and requires a number of steps including vasculogenesis and angiogenesis that are followed by differentiation into specialized vascular tissues (i.e., arteries, veins, and lymphatics) and...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.1002148
更新日期:2015-05-15 00:00:00
abstract::Citizen science is mainstream: millions of people contribute data to a growing array of citizen science projects annually, forming massive datasets that will drive research for years to come. Many citizen science projects implement a "leaderboard" framework, ranking the contributions based on number of records or spec...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.3000357
更新日期:2019-06-27 00:00:00
abstract::Myosin VI has been studied in both a monomeric and a dimeric form in vitro. Because the functional characteristics of the motor are dramatically different for these two forms, it is important to understand whether myosin VI heavy chains are brought together on endocytic vesicles. We have used fluorescence anisotropy m...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0050210
更新日期:2007-08-01 00:00:00
abstract::Disease-associated misfolded proteins or proteins damaged due to cellular stress are generally disposed via the cellular protein quality-control system. However, under saturating conditions, misfolded proteins will aggregate. In higher eukaryotes, these aggregates can be transported to accumulate in aggresomes at the ...
journal_title:PLoS biology
pub_type: 杂志文章
doi:10.1371/journal.pbio.0040417
更新日期:2006-12-01 00:00:00