Gfi1b regulates the level of Wnt/β-catenin signaling in hematopoietic stem cells and megakaryocytes.

Abstract:

:Gfi1b is a transcriptional repressor expressed in hematopoietic stem cells (HSCs) and megakaryocytes (MKs). Gfi1b deficiency leads to expansion of both cell types and abrogates the ability of MKs to respond to integrin. Here we show that Gfi1b forms complexes with β-catenin, its co-factors Pontin52, CHD8, TLE3 and CtBP1 and regulates Wnt/β-catenin-dependent gene expression. In reporter assays, Gfi1b can activate TCF-dependent transcription and Wnt3a treatment enhances this activation. This requires interaction between Gfi1b and LSD1 and suggests that a tripartite β-catenin/Gfi1b/LSD1 complex exists, which regulates Wnt/β-catenin target genes. Consistently, numerous canonical Wnt/β-catenin target genes, co-occupied by Gfi1b, β-catenin and LSD1, have their expression deregulated in Gfi1b-deficient cells. When Gfi1b-deficient cells are treated with Wnt3a, their normal cellularity is restored and Gfi1b-deficient MKs regained their ability to spread on integrin substrates. This indicates that Gfi1b controls both the cellularity and functional integrity of HSCs and MKs by regulating Wnt/β-catenin signaling pathway.

journal_name

Nat Commun

journal_title

Nature communications

authors

Shooshtarizadeh P,Helness A,Vadnais C,Brouwer N,Beauchemin H,Chen R,Bagci H,Staal FJT,Coté JF,Möröy T

doi

10.1038/s41467-019-09273-z

subject

Has Abstract

pub_date

2019-03-20 00:00:00

pages

1270

issue

1

issn

2041-1723

pii

10.1038/s41467-019-09273-z

journal_volume

10

pub_type

杂志文章
  • Demographic histories and genetic diversity across pinnipeds are shaped by human exploitation, ecology and life-history.

    abstract::A central paradigm in conservation biology is that population bottlenecks reduce genetic diversity and population viability. In an era of biodiversity loss and climate change, understanding the determinants and consequences of bottlenecks is therefore an important challenge. However, as most studies focus on single sp...

    journal_title:Nature communications

    pub_type: 历史文章,杂志文章

    doi:10.1038/s41467-018-06695-z

    authors: Stoffel MA,Humble E,Paijmans AJ,Acevedo-Whitehouse K,Chilvers BL,Dickerson B,Galimberti F,Gemmell NJ,Goldsworthy SD,Nichols HJ,Krüger O,Negro S,Osborne A,Pastor T,Robertson BC,Sanvito S,Schultz JK,Shafer ABA,Wolf JBW

    更新日期:2018-11-16 00:00:00

  • Breast cancer cells condition lymphatic endothelial cells within pre-metastatic niches to promote metastasis.

    abstract::Breast cancer metastasis involves lymphatic dissemination in addition to hematogenous spreading. Although stromal lymphatic vessels (LVs) serve as initial metastatic routes, roles of organ-residing LVs are underinvestigated. Here we show that lymphatic endothelial cells (LECs), a component of LVs within pre-metastatic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5715

    authors: Lee E,Fertig EJ,Jin K,Sukumar S,Pandey NB,Popel AS

    更新日期:2014-09-02 00:00:00

  • REV7 is required for processing AID initiated DNA lesions in activated B cells.

    abstract::Activation-induced cytidine deaminase (AID) initiates both antibody class switch recombination (CSR) and somatic hypermutation (SHM) in antibody diversification. DNA double-strand break response (DSBR) factors promote rearrangement in CSR, while translesion synthesis (TLS) polymerases generate mutations in SHM. REV7, ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16632-8

    authors: Yang D,Sun Y,Chen J,Zhang Y,Fan S,Huang M,Xie X,Cai Y,Shang Y,Gui T,Sun L,Hu J,Dong J,Yeap LS,Wang X,Xiao W,Meng FL

    更新日期:2020-06-04 00:00:00

  • A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes.

    abstract::A platform for highly parallel direct sequencing of native RNA strands was recently described by Oxford Nanopore Technologies, but despite initial efforts it remains crucial to further investigate the technology for quantification of complex transcriptomes. Here we undertake native RNA sequencing of polyA + RNA from t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11272-z

    authors: Soneson C,Yao Y,Bratus-Neuenschwander A,Patrignani A,Robinson MD,Hussain S

    更新日期:2019-07-31 00:00:00

  • Prefrontal attentional saccades explore space rhythmically.

    abstract::Recent studies suggest that attention samples space rhythmically through oscillatory interactions in the frontoparietal network. How these attentional fluctuations coincide with spatial exploration/displacement and exploitation/selection by a dynamic attentional spotlight under top-down control is unclear. Here, we sh...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14649-7

    authors: Gaillard C,Ben Hadj Hassen S,Di Bello F,Bihan-Poudec Y,VanRullen R,Ben Hamed S

    更新日期:2020-02-17 00:00:00

  • A scanning cavity microscope.

    abstract::Imaging the optical properties of individual nanosystems beyond fluorescence can provide a wealth of information. However, the minute signals for absorption and dispersion are challenging to observe, and only specialized techniques requiring sophisticated noise rejection are available. Here we use signal enhancement i...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8249

    authors: Mader M,Reichel J,Hänsch TW,Hunger D

    更新日期:2015-06-24 00:00:00

  • Corrigendum: Superfast assembly and synthesis of gold nanostructures using nanosecond low-temperature compression via magnetic pulsed power.

    abstract::This corrects the article DOI: 10.1038/ncomms14778. ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/ncomms15574

    authors: Li B,Bian K,Lane JMD,Salerno KM,Grest GS,Ao T,Hickman R,Wise J,Wang Z,Fan H

    更新日期:2017-05-24 00:00:00

  • Oxidising agents in sub-arc mantle melts link slab devolatilisation and arc magmas.

    abstract::Subduction zone magmas are more oxidised on eruption than those at mid-ocean ridges. This is attributed either to oxidising components, derived from subducted lithosphere (slab) and added to the mantle wedge, or to oxidation processes occurring during magma ascent via differentiation. Here we provide direct evidence f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05804-2

    authors: Bénard A,Klimm K,Woodland AB,Arculus RJ,Wilke M,Botcharnikov RE,Shimizu N,Nebel O,Rivard C,Ionov DA

    更新日期:2018-08-29 00:00:00

  • Publisher Correction: CD146-HIF-1α hypoxic reprogramming drives vascular remodeling and pulmonary arterial hypertension.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-019-12107-7

    authors: Luo Y,Teng X,Zhang L,Chen J,Liu Z,Chen X,Zhao S,Yang S,Feng J,Yan X

    更新日期:2019-09-05 00:00:00

  • Quantized circular photogalvanic effect in Weyl semimetals.

    abstract::The circular photogalvanic effect (CPGE) is the part of a photocurrent that switches depending on the sense of circular polarization of the incident light. It has been consistently observed in systems without inversion symmetry and depends on non-universal material details. Here we find that in a class of Weyl semimet...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms15995

    authors: de Juan F,Grushin AG,Morimoto T,Moore JE

    更新日期:2017-07-06 00:00:00

  • Cascading ecological effects of eliminating fishery discards.

    abstract::Discarding by fisheries is perceived as contrary to responsible harvesting. Legislation seeking to end the practice is being introduced in many jurisdictions. However, discarded fish are food for a range of scavenging species; so, ending discarding may have ecological consequences. Here we investigate the sensitivity ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4893

    authors: Heath MR,Cook RM,Cameron AI,Morris DJ,Speirs DC

    更新日期:2014-05-13 00:00:00

  • Protein kinase D regulates positive selection of CD4+ thymocytes through phosphorylation of SHP-1.

    abstract::Thymic selection shapes an appropriate T cell antigen receptor (TCR) repertoire during T cell development. Here, we show that a serine/threonine kinase, protein kinase D (PKD), is crucial for thymocyte positive selection. In T cell-specific PKD-deficient (PKD2/PKD3 double-deficient) mice, the generation of CD4 single ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12756

    authors: Ishikawa E,Kosako H,Yasuda T,Ohmuraya M,Araki K,Kurosaki T,Saito T,Yamasaki S

    更新日期:2016-09-27 00:00:00

  • Centromeric binding and activity of Protein Phosphatase 4.

    abstract::The cell division cycle requires tight coupling between protein phosphorylation and dephosphorylation. However, understanding the cell cycle roles of multimeric protein phosphatases has been limited by the lack of knowledge of how their diverse regulatory subunits target highly conserved catalytic subunits to their si...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms6894

    authors: Lipinszki Z,Lefevre S,Savoian MS,Singleton MR,Glover DM,Przewloka MR

    更新日期:2015-01-06 00:00:00

  • Atomically defined angstrom-scale all-carbon junctions.

    abstract::Full-carbon electronics at the scale of several angstroms is an expeimental challenge, which could be overcome by exploiting the versatility of carbon allotropes. Here, we investigate charge transport through graphene/single-fullerene/graphene hybrid junctions using a single-molecule manipulation technique. Such sub-n...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09793-8

    authors: Tan Z,Zhang D,Tian HR,Wu Q,Hou S,Pi J,Sadeghi H,Tang Z,Yang Y,Liu J,Tan YZ,Chen ZB,Shi J,Xiao Z,Lambert C,Xie SY,Hong W

    更新日期:2019-04-15 00:00:00

  • Blockade of leukemia inhibitory factor as a therapeutic approach to KRAS driven pancreatic cancer.

    abstract::KRAS mutations are present in over 90% of pancreatic ductal adenocarcinomas (PDAC), and drive their poor outcomes and failure to respond to targeted therapies. Here we show that Leukemia Inhibitory Factor (LIF) expression is induced specifically by oncogenic KRAS in PDAC and that LIF depletion by genetic means or by n...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11044-9

    authors: Wang MT,Fer N,Galeas J,Collisson EA,Kim SE,Sharib J,McCormick F

    更新日期:2019-07-11 00:00:00

  • Three-dimensional character of the deformation twin in magnesium.

    abstract::Deformation twins are three-dimensional domains, traditionally viewed as ellipsoids because of their two-dimensional lenticular sections. In this work, we performed statistical analysis of twin shapes viewing along three orthogonal directions: the 'dark side' (DS) view along the twin shear direction (η1), the twinning...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-10573-7

    authors: Liu Y,Tang PZ,Gong MY,McCabe RJ,Wang J,Tomé CN

    更新日期:2019-07-25 00:00:00

  • Machine learning uncovers independently regulated modules in the Bacillus subtilis transcriptome.

    abstract::The transcriptional regulatory network (TRN) of Bacillus subtilis coordinates cellular functions of fundamental interest, including metabolism, biofilm formation, and sporulation. Here, we use unsupervised machine learning to modularize the transcriptome and quantitatively describe regulatory activity under diverse co...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-20153-9

    authors: Rychel K,Sastry AV,Palsson BO

    更新日期:2020-12-11 00:00:00

  • Complex virome in feces from Amerindian children in isolated Amazonian villages.

    abstract::The number of viruses circulating in small isolated human populations may be reduced by viral extinctions and rare introductions. Here we used viral metagenomics to characterize the eukaryotic virome in feces from healthy children from a large urban center and from three Amerindian villages with minimal outside contac...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06502-9

    authors: Siqueira JD,Dominguez-Bello MG,Contreras M,Lander O,Caballero-Arias H,Xutao D,Noya-Alarcon O,Delwart E

    更新日期:2018-10-15 00:00:00

  • Bulk tissue cell type deconvolution with multi-subject single-cell expression reference.

    abstract::Knowledge of cell type composition in disease relevant tissues is an important step towards the identification of cellular targets of disease. We present MuSiC, a method that utilizes cell-type specific gene expression from single-cell RNA sequencing (RNA-seq) data to characterize cell type compositions from bulk RNA-...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08023-x

    authors: Wang X,Park J,Susztak K,Zhang NR,Li M

    更新日期:2019-01-22 00:00:00

  • Reversible multicolor chromism in layered formamidinium metal halide perovskites.

    abstract::Metal halide perovskites feature crystalline-like electronic band structures and liquid-like physical properties. The crystal-liquid duality enables optoelectronic devices with unprecedented performance and a unique opportunity to chemically manipulate the structure with low energy input. In this work, we leverage the...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19009-z

    authors: Rosales BA,Mundt LE,Allen TG,Moore DT,Prince KJ,Wolden CA,Rumbles G,Schelhas LT,Wheeler LM

    更新日期:2020-10-16 00:00:00

  • Self-assembly of DNA nanotubes with controllable diameters.

    abstract::The synthesis of DNA nanotubes is an important area in nanobiotechnology. Different methods to assemble DNA nanotubes have been reported, and control over the width of the nanotubes has been achieved by programmed subunits of DNA tiles. Here we report the self-assembly of DNA nanotubes with controllable diameters. The...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1535

    authors: Wilner OI,Orbach R,Henning A,Teller C,Yehezkeli O,Mertig M,Harries D,Willner I

    更新日期:2011-11-15 00:00:00

  • Initialized decadal prediction for transition to positive phase of the Interdecadal Pacific Oscillation.

    abstract::The negative phase of the Interdecadal Pacific Oscillation (IPO), a dominant mode of multi-decadal variability of sea surface temperatures (SSTs) in the Pacific, contributed to the reduced rate of global surface temperature warming in the early 2000s. A proposed mechanism for IPO multidecadal variability indicates tha...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms11718

    authors: Meehl GA,Hu A,Teng H

    更新日期:2016-06-02 00:00:00

  • Obligatory and facilitative allelic variation in the DNA methylome within common disease-associated loci.

    abstract::Integrating epigenetic data with genome-wide association study (GWAS) results can reveal disease mechanisms. The genome sequence itself also shapes the epigenome, with CpG density and transcription factor binding sites (TFBSs) strongly encoding the DNA methylome. Therefore, genetic polymorphism impacts on the observed...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01586-1

    authors: Bell CG,Gao F,Yuan W,Roos L,Acton RJ,Xia Y,Bell J,Ward K,Mangino M,Hysi PG,Wang J,Spector TD

    更新日期:2018-01-02 00:00:00

  • Structure of transcribing RNA polymerase II-nucleosome complex.

    abstract::Transcription of eukaryotic protein-coding genes requires passage of RNA polymerase II (Pol II) through nucleosomes, but it is unclear how this is achieved. Here we report the cryo-EM structure of transcribing Saccharomyces cerevisiae Pol II engaged with a downstream nucleosome core particle at an overall resolution o...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-07870-y

    authors: Farnung L,Vos SM,Cramer P

    更新日期:2018-12-21 00:00:00

  • Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer.

    abstract::Enterobacteria, especially Escherichia coli, are abundant in patients with inflammatory bowel disease or colorectal cancer (CRC). However, it is unclear whether cancer is promoted by inflammation-induced expansion of E. coli and/or changes in expression of specific microbial genes. Here we use longitudinal (2, 12 and ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5724

    authors: Arthur JC,Gharaibeh RZ,Mühlbauer M,Perez-Chanona E,Uronis JM,McCafferty J,Fodor AA,Jobin C

    更新日期:2014-09-03 00:00:00

  • Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids.

    abstract::The worldwide incidence of pulmonary carcinoids is increasing, but little is known about their molecular characteristics. Through machine learning and multi-omics factor analysis, we compare and contrast the genomic profiles of 116 pulmonary carcinoids (including 35 atypical), 75 large-cell neuroendocrine carcinomas (...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11276-9

    authors: Alcala N,Leblay N,Gabriel AAG,Mangiante L,Hervas D,Giffon T,Sertier AS,Ferrari A,Derks J,Ghantous A,Delhomme TM,Chabrier A,Cuenin C,Abedi-Ardekani B,Boland A,Olaso R,Meyer V,Altmuller J,Le Calvez-Kelm F,Durand G,V

    更新日期:2019-08-20 00:00:00

  • Defective mitochondrial DNA homeostasis in the substantia nigra in Parkinson disease.

    abstract::Increased somatic mitochondrial DNA (mtDNA) mutagenesis causes premature aging in mice, and mtDNA damage accumulates in the human brain with aging and neurodegenerative disorders such as Parkinson disease (PD). Here, we study the complete spectrum of mtDNA changes, including deletions, copy-number variation and point ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13548

    authors: Dölle C,Flønes I,Nido GS,Miletic H,Osuagwu N,Kristoffersen S,Lilleng PK,Larsen JP,Tysnes OB,Haugarvoll K,Bindoff LA,Tzoulis C

    更新日期:2016-11-22 00:00:00

  • Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages.

    abstract::Pulmonary disease increases the risk of developing abdominal aortic aneurysms (AAA). However, the mechanism underlying the pathological dialogue between the lungs and aorta is undefined. Here, we find that inflicting acute lung injury (ALI) to mice doubles their incidence of AAA and accelerates macrophage-driven prote...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18088-2

    authors: Boytard L,Hadi T,Silvestro M,Qu H,Kumpfbeck A,Sleiman R,Fils KH,Alebrahim D,Boccalatte F,Kugler M,Corsica A,Gelb BE,Jacobowitz G,Miller G,Bellini C,Oakes J,Silvestre JS,Zangi L,Ramkhelawon B

    更新日期:2020-08-27 00:00:00

  • Plasma dye coating as straightforward and widely applicable procedure for dye immobilization on polymeric materials.

    abstract::Here, we introduce a novel concept for the fabrication of colored materials with significantly reduced dye leaching through covalent immobilization of the desired dye using plasma-generated surface radicals. This plasma dye coating (PDC) procedure immobilizes a pre-adsorbed layer of a dye functionalized with a radical...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03583-4

    authors: De Smet L,Vancoillie G,Minshall P,Lava K,Steyaert I,Schoolaert E,Van De Walle E,Dubruel P,De Clerck K,Hoogenboom R

    更新日期:2018-03-16 00:00:00

  • Long-lived unipotent Blimp1-positive luminal stem cells drive mammary gland organogenesis throughout adult life.

    abstract::The hierarchical relationships between various stem and progenitor cell subpopulations driving mammary gland morphogenesis and homoeostasis are poorly understood. Conditional inactivation experiments previously demonstrated that expression of the zinc finger transcriptional repressor Blimp1/PRDM1 is essential for the ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01971-w

    authors: Elias S,Morgan MA,Bikoff EK,Robertson EJ

    更新日期:2017-11-20 00:00:00