The Reaction of Dimerization by Itself Reduces the Noise Intensity of the Protein Monomer.

Abstract:

:Because of the small particle number of intracellular species participating in genetic circuits, stochastic fluctuations are inevitable. This intracellular noise is detrimental to precise regulation. To maintain the proper function of a cell, some natural motifs attenuate the noise at the protein level. In many biological systems, the protein monomer is used as a regulator, but the protein dimer also exists. In the present study, we demonstrated that the dimerization reaction reduces the noise intensity of the protein monomer. Compared with two common noise-buffering motifs, the incoherent feedforward loop (FFL) and negative feedback control, the coefficient of variation (COV) in the case of dimerization was 25% less. Furthermore, we examined a system with direct interaction between proteins and other ligands. Both the incoherent FFL and negative feedback control failed to buffer the noise, but the dimerization was effective. Remarkably, the formation of only one protein dimer was sufficient to cause a 7.5% reduction in the COV.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Liu FY,Lo SC,Shu CC

doi

10.1038/s41598-019-39611-6

subject

Has Abstract

pub_date

2019-03-04 00:00:00

pages

3405

issue

1

issn

2045-2322

pii

10.1038/s41598-019-39611-6

journal_volume

9

pub_type

杂志文章
  • Alcohol consumption and leukocyte telomere length.

    abstract::The relationship between alcohol consumption and mortality generally exhibits a U-shaped curve. The longevity observed with moderate alcohol consumption may be explained by other confounding factors, and, if such a relationship is present, the mechanism is not well understood. Indeed, the optimal amount of alcohol con...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38904-0

    authors: Dixit S,Whooley MA,Vittinghoff E,Roberts JD,Heckbert SR,Fitzpatrick AL,Lin J,Leung C,Mukamal KJ,Marcus GM

    更新日期:2019-02-05 00:00:00

  • Effects of polarization mode dispersion on polarization-entangled photons generated via broadband pumped spontaneous parametric down-conversion.

    abstract::An inexpensive and compact frequency multi-mode diode laser enables a compact two-photon polarization entanglement source via the continuous wave broadband pumped spontaneous parametric down-conversion (SPDC) process. Entanglement degradation caused by polarization mode dispersion (PMD) is one of the critical issues i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25846

    authors: Lim HT,Hong KH,Kim YH

    更新日期:2016-05-13 00:00:00

  • Focal stimulation of the temporoparietal junction improves rationality in prosocial decision-making.

    abstract::We tested the hypothesis that modulation of neurocomputational inputs to value-based decision-making affects the rationality of economic choices. The brain's right temporoparietal junction (rTPJ) has been functionally associated with both social behavior and with domain-general information processing and attention. To...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76956-9

    authors: Li F,Ball S,Zhang X,Smith A

    更新日期:2020-11-20 00:00:00

  • Intraperitoneal and subcutaneous glucagon delivery in anaesthetized pigs: effects on circulating glucagon and glucose levels.

    abstract::Glucagon is a pancreatic hormone and increases the blood glucose levels. It may be incorporated in a dual hormone artificial pancreas, a device to automatically and continuously control blood glucose levels of individuals with diabetes. Artificial pancreas systems have been developed for use in the subcutaneous tissue...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70813-5

    authors: Åm MK,Dirnena-Fusini I,Fougner AL,Carlsen SM,Christiansen SC

    更新日期:2020-08-13 00:00:00

  • Long-term use of ceftriaxone sodium induced changes in gut microbiota and immune system.

    abstract::Antibiotic administration, while facilitating clearance of targeted infections, also perturbs commensal microbial communities. Previous studies have all focused on the effects of short term use of antibiotics. Here, we focus on the effects of long term use of antibiotic on gut microbiota and immunity. BALB/c mice rece...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43035

    authors: Guo Y,Yang X,Qi Y,Wen S,Liu Y,Tang S,Huang R,Tang L

    更新日期:2017-02-21 00:00:00

  • Safety assessment of antibiotic and probiotic feed additives for Gallus gallus domesticus.

    abstract::Antibiotics in feed select for resistant strains and is thus a threat to human health. In this study, the effect of a multi-strain probiotic and antibiotics on the growth and health of broilers was studied. Equal numbers of broilers received on a daily basis either a multi-strain probiotic or a combination of sulphadi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12866-7

    authors: Neveling DP,van Emmenes L,Ahire JJ,Pieterse E,Smith C,Dicks LMT

    更新日期:2017-10-16 00:00:00

  • Winner-loser effects overrule aggressiveness during the early stages of contests between pigs.

    abstract::Contest behaviour, and in particular the propensity to attack an unfamiliar conspecific, is influenced by an individual's aggressiveness, as well as by experience of winning and losing (so called 'winner-loser effects'). Individuals vary in aggressiveness and susceptibility to winner-loser effects but the relationship...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69664-x

    authors: Oldham L,Camerlink I,Arnott G,Doeschl-Wilson A,Farish M,Turner SP

    更新日期:2020-08-07 00:00:00

  • Prognostic signature of lung adenocarcinoma based on stem cell-related genes.

    abstract::Lung adenocarcinoma (LUAD) is characterized by high infiltration and rapid growth. The function of the stem cell population is to control and maintain cell regeneration. Therefore, it is necessary to study the prognostic value of stem cell-related genes in LUAD. Signature genes were screened out from 166 stem cell-rel...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80453-4

    authors: Huang Z,Shi M,Zhou H,Wang J,Zhang HJ,Shi J-

    更新日期:2021-01-18 00:00:00

  • A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases.

    abstract::Inosine-5'-monophosphate dehydrogenase (IMPDH) is an essential enzyme for nucleotide metabolism and cell proliferation. Despite IMPDH is the target of drugs with antiviral, immunosuppressive and antitumor activities, its physiological mechanisms of regulation remain largely unknown. Using the enzyme from the industria...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02805-x

    authors: Buey RM,Fernández-Justel D,Marcos-Alcalde Í,Winter G,Gómez-Puertas P,de Pereda JM,Luis Revuelta J

    更新日期:2017-06-01 00:00:00

  • Field cress genome mapping: Integrating linkage and comparative maps with cytogenetic analysis for rDNA carrying chromosomes.

    abstract::Field cress (Lepidium campestre L.), despite its potential as a sustainable alternative oilseed plant, has been underutilized, and no prior attempts to characterize the genome at the genetic or molecular cytogenetic level have been conducted. Genetic maps are the foundation for anchoring and orienting annotated genome...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53320-0

    authors: Desta ZA,Kolano B,Shamim Z,Armstrong SJ,Rewers M,Sliwinska E,Kushwaha SK,Parkin IAP,Ortiz R,de Koning DJ

    更新日期:2019-11-19 00:00:00

  • Metagenomic evidence of stronger effect of stylo (legume) than bahiagrass (grass) on taxonomic and functional profiles of the soil microbial community.

    abstract::Plants are key determinants of soil microbial community (SMC). Legumes and grasses are distinct groups in various ecosystems; however, how they differentially shape SMC structure and functioning has yet to be explored. Here, we investigate SMC in soils grown with stylo (legume) or bahiagrass (grass). Soil metagenomic ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-10613-6

    authors: Zhou Y,Zhu H,Fu S,Yao Q

    更新日期:2017-08-31 00:00:00

  • Pedigree-based genome re-sequencing reveals genetic variation patterns of elite backbone varieties during modern rice improvement.

    abstract::Rice breeding has achieved great productivity improvements by semi-dwarf varieties and hybrid vigour. Due to poor understanding of genetic basis of elite backbone varieties, the continuous increasing in rice yield still faces great challenges. Here, 52 elite rice varieties from three historical representative pedigree...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00415-1

    authors: Zheng X,Li L,Liang F,Tan C,Tang S,Yu S,Diao Y,Li S,Hu Z

    更新日期:2017-03-22 00:00:00

  • Social content and emotional valence modulate gaze fixations in dynamic scenes.

    abstract::Previous research has shown that low-level visual features (i.e., low-level visual saliency) as well as socially relevant information predict gaze allocation in free viewing conditions. However, these studies mainly used static and highly controlled stimulus material, thus revealing little about the robustness of atte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22127-w

    authors: Rubo M,Gamer M

    更新日期:2018-02-28 00:00:00

  • Colonization and diversification of the Euphorbia species (sect. Aphyllis subsect. Macaronesicae) on the Canary Islands.

    abstract::Diversification between islands and ecological radiation within islands are postulated to have occurred in the Euphorbia species (sect. Aphyllis subsect. Macaronesicae) on the Canary Islands. In this study, the biogeographical pattern of 11 species of subsect. Macaronesicae and the genetic differentiation among five s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34454

    authors: Sun Y,Li Y,Vargas-Mendoza CF,Wang F,Xing F

    更新日期:2016-09-29 00:00:00

  • The microfluidic multitrap nanophysiometer for hematologic cancer cell characterization reveals temporal sensitivity of the calcein-AM efflux assay.

    abstract::Cytometric studies utilizing flow cytometry or multi-well culture plate fluorometry are often limited by a deficit in temporal resolution and a lack of single cell consideration. Unfortunately, many cellular processes, including signaling, motility, and molecular transport, occur transiently over relatively short peri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05117

    authors: Byrd TF 4th,Hoang LT,Kim EG,Pfister ME,Werner EM,Arndt SE,Chamberlain JW,Hughey JJ,Nguyen BA,Schneibel EJ,Wertz LL,Whitfield JS,Wikswo JP,Seale KT

    更新日期:2014-05-30 00:00:00

  • Computationally-driven engineering of sublattice ordering in a hexagonal AlHfScTiZr high entropy alloy.

    abstract::Multi-principle element alloys have enormous potential, but their exploration suffers from the tremendously large range of configurations. In the last decade such alloys have been designed with a focus on random solid solutions. Here we apply an experimentally verified, combined thermodynamic and first-principles desi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02385-w

    authors: Rogal L,Bobrowski P,Körmann F,Divinski S,Stein F,Grabowski B

    更新日期:2017-05-19 00:00:00

  • Circulating plant miRNAs can regulate human gene expression in vitro.

    abstract::While Brassica oleracea vegetables have been linked to cancer prevention, the exact mechanism remains unknown. Regulation of gene expression by cross-species microRNAs has been previously reported; however, its link to cancer suppression remains unexplored. In this study we address both issues. We confirm plant microR...

    journal_title:Scientific reports

    pub_type: 杂志文章,收录出版

    doi:10.1038/srep32773

    authors: Pastrello C,Tsay M,McQuaid R,Abovsky M,Pasini E,Shirdel E,Angeli M,Tokar T,Jamnik J,Kotlyar M,Jurisicova A,Kotsopoulos J,El-Sohemy A,Jurisica I

    更新日期:2016-09-08 00:00:00

  • Study on the experimental performance by electrolysis-integrated ecological floating bed for nitrogen and phosphorus removal in eutrophic water.

    abstract::The new-type electrolysis-integrated ecological floating beds (EEFBs) were set up to study their water removal ability due to the excellent water treatment capacity of electrolysis, this enhanced EEFBs were made of polyethylene filled with biochar substrate and in middle of the substrate placed the Mg-Al alloy served ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64499-y

    authors: Yan C,Wang M,Ma T,Yang S,Kong M,Shen J,Yang L,Gao Y

    更新日期:2020-05-06 00:00:00

  • Chaotic optical power dropouts driven by low frequency bias forcing in a mid-infrared quantum cascade laser.

    abstract::Mid-infrared quantum cascade lasers operating under external optical feedback and external periodic bias forcing are shown to exhibit a deterministic chaotic pattern composed of frequencies which are linked to the one of the forcing. Results also show that both the amplitude and the frequency of the forcing play a key...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-40861-7

    authors: Spitz O,Wu J,Carras M,Wong CW,Grillot F

    更新日期:2019-03-14 00:00:00

  • Unique IL-13Rα2/STAT3 mediated IL-13 regulation detected in lung conventional dendritic cells, 24 h post viral vector vaccination.

    abstract::This study demonstrates that 24 h following viral vector-based vaccination IL-13Rα2 functions as a master sensor on conventional dendritic cells (cDCs), abetted by high protein stability coupled with minimal mRNA expression, to rapidly regulate DC mediated IL-13 responses at the lung mucosae, unlike IL-13Rα1. Under lo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57815-z

    authors: Roy S,Liu HY,Jaeson MI,Deimel LP,Ranasinghe C

    更新日期:2020-01-23 00:00:00

  • Electronic Excitation Dynamics in Liquid Water under Proton Irradiation.

    abstract::Molecular behaviour of liquid water under proton irradiation is of great importance to a number of technological and medical applications. The highly energetic proton generates a time-varying field that is highly localized and heterogeneous at the molecular scale, and massive electronic excitations are produced as a r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40379

    authors: Reeves KG,Kanai Y

    更新日期:2017-01-13 00:00:00

  • Disadvantageous associations: Reversible spatial cueing effects in a discrimination task.

    abstract::Current theories describe learning in terms of cognitive or associative mechanisms. To assess whether cognitive mechanisms interact with automaticity of associative processes we devised a shape-discrimination task in which participants received both explicit instructions and implicit information. Instructions further ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16156

    authors: Nico D,Daprati E

    更新日期:2015-11-04 00:00:00

  • Hepatic overproduction of 13-HODE due to ALOX15 upregulation contributes to alcohol-induced liver injury in mice.

    abstract::Chronic alcohol feeding causes lipid accumulation and apoptosis in the liver. This study investigated the role of bioactive lipid metabolites in alcohol-induced liver damage and tested the potential of targeting arachidonate 15-lipoxygenase (ALOX15) in treating alcoholic liver disease (ALD). Results showed that chroni...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02759-0

    authors: Zhang W,Zhong W,Sun Q,Sun X,Zhou Z

    更新日期:2017-08-21 00:00:00

  • High Performance Graphene Nano-ribbon Thermoelectric Devices by Incorporation and Dimensional Tuning of Nanopores.

    abstract::Thermoelectric properties of Graphene nano-ribbons (GNRs) with nanopores (NPs) are explored for a range of pore dimensions in order to achieve a high performance two-dimensional nano-scale thermoelectric device. We reduce thermal conductivity of GNRs by introducing pores in them in order to enhance their thermoelectri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11297

    authors: Hossain MS,Al-Dirini F,Hossain FM,Skafidas E

    更新日期:2015-06-17 00:00:00

  • Selection of a novel DNA aptamer against OFA/iLRP for targeted delivery of doxorubicin to AML cells.

    abstract::The standard treatment for most acute myeloid leukemia (AML) is chemotherapy, which is often associated with severe adverse effects. One strategy to reduce the adverse effects is targeted therapy that can selectively deliver anticancer drugs to tumor cells. Immature laminin receptor protein (OFA/iLRP) is a potential t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43910-3

    authors: An Y,Hu Y,Li X,Li Z,Duan J,Yang XD

    更新日期:2019-05-14 00:00:00

  • Self-healing capacity of nuclear glass observed by NMR spectroscopy.

    abstract::Safe management of high level nuclear waste is a worldwide significant issue for which vitrification has been selected by many countries. There exists a crucial need for improving our understanding of the ageing of the glass under irradiation. While external irradiation by ions provides a rapid simulation of damage in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25499

    authors: Charpentier T,Martel L,Mir AH,Somers J,Jégou C,Peuget S

    更新日期:2016-05-05 00:00:00

  • Risk Factors for Progression of Barrett's Esophagus to High Grade Dysplasia and Esophageal Adenocarcinoma.

    abstract::Barrett's esophagus (BE) is the only known precursor to esophageal adenocarcinoma (EAC). Methods of identifying BE patients at high risk for progression to high-grade dysplasia (HGD) or EAC are needed to improve outcomes and identify who will benefit most from intensive surveillance or ablative therapy. Clinical predi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61874-7

    authors: Kambhampati S,Tieu AH,Luber B,Wang H,Meltzer SJ

    更新日期:2020-03-17 00:00:00

  • Ammonia Volatilization Loss and Corn Nitrogen Nutrition and Productivity with Efficiency Enhanced UAN and Urea under No-tillage.

    abstract::New urease and nitrification inhibitors and polymer coatings were introduced in recent years, but their effects on N loss and plant N nutrition were scarcely examined in agronomic no-tillage production systems. A field experiment of urea treated with efficiency enhancers was conducted on no-tillage corn (Zea mays L.) ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42912-5

    authors: Liu S,Wang X,Yin X,Savoy HJ,McClure A,Essington ME

    更新日期:2019-04-29 00:00:00

  • Diversity of gut microflora is required for the generation of B cell with regulatory properties in a skin graft model.

    abstract::B cells have been reported to promote graft rejection through alloantibody production. However, there is growing evidence that B cells can contribute to the maintenance of tolerance. Here, we used a mouse model of MHC-class I mismatched skin transplantation to investigate the contribution of B cells to graft survival....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11554

    authors: Alhabbab R,Blair P,Elgueta R,Stolarczyk E,Marks E,Becker PD,Ratnasothy K,Smyth L,Safinia N,Sharif-Paghaleh E,O'Connell S,Noelle RJ,Lord GM,Howard JK,Spencer J,Lechler RI,Lombardi G

    更新日期:2015-06-25 00:00:00

  • Lentiviral shRNA against KCa3.1 inhibits allergic response in allergic rhinitis and suppresses mast cell activity via PI3K/AKT signaling pathway.

    abstract::Calcium-activated potassium ion channel-3.1 (KCa3.1) plays a pivotal role in the potassium-calcium exchange involved in atopy. This study aimed to explore the impact of lentiviral-mediated shRNA silencing KCa3.1 on allergic response in a murine allergic rhinitis (AR) model. The BALB/c mice were divided into four group...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13127

    authors: Lin H,Zheng C,Li J,Yang C,Hu L

    更新日期:2015-08-14 00:00:00