Abstract:
:Janus, patchy, stripe-like, or random arrangements of molecules within the ligand shell of nanoparticles affect many properties. Among all existing ligand shell morphology characterization methods, the one based on mass spectroscopy is arguably the simplest. Its greatest limitation is that the results are qualitative. Here, we use a tailor-made Monte Carlo type program that fits the whole MALDI spectrum and generates a 3D model of the ligand shell. Quantitative description of the ligand shell in terms of nearest neighbor distribution and characteristic length scale can be readily extracted by the model, and are compared with the results of other characterization methods. A parameter related to the intermolecular interaction is extracted when this method is combined with NMR. This approach could become the routine method to characterize the ligand shell morphology of many nanoparticles and we provide an open access program to facilitate its use.
journal_name
Nat Communjournal_title
Nature communicationsauthors
Luo Z,Zhao Y,Darwish T,Wang Y,Hou J,Stellacci Fdoi
10.1038/s41467-018-06939-ysubject
Has Abstractpub_date
2018-10-26 00:00:00pages
4478issue
1issn
2041-1723pii
10.1038/s41467-018-06939-yjournal_volume
9pub_type
杂志文章abstract::Current approaches to monitor and quantify cell division in live cells, and reliably distinguish between acytokinesis and endoreduplication, are limited and complicate determination of stem cell pool identities. Here we overcome these limitations by generating an in vivo reporter system using the scaffolding protein a...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms2089
更新日期:2012-01-01 00:00:00
abstract::Many microorganisms, with phytoplankton and zooplankton as prominent examples, display phototactic behaviour, that is, the ability to perform directed motion within a light gradient. Here we experimentally demonstrate that sensing of light gradients can also be achieved in a system of synthetic photo-activated micropa...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms12828
更新日期:2016-09-30 00:00:00
abstract::Among various flat optical devices, metasurfaces have presented their great ability in efficient manipulation of light fields and have been proposed for variety of devices with specific functionalities. However, due to the high phase dispersion of their building blocks, metasurfaces significantly suffer from large chr...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-017-00166-7
更新日期:2017-08-04 00:00:00
abstract::When immersed into water, most solids develop a surface charge, which is neutralized by an accumulation of dissolved counterions at the interface. Although the density distribution of counterions perpendicular to the interface obeys well-established theories, little is known about counterions' lateral organization at ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms5400
更新日期:2014-07-16 00:00:00
abstract::The continued convergence of electronics and photonics on the chip scale can benefit from the voltage control of optical polarization for applications in communications, signal processing and sensing. It is challenging, however, to electrically manipulate the polarization state of light in planar optical waveguides. H...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms6337
更新日期:2014-11-12 00:00:00
abstract::Although optical technology provides the best solution for the transmission of information, all-optical devices must satisfy several qualitative criteria to be used as logic elements. In particular, cascadability is difficult to obtain in optical systems, and it is assured only if the output of one stage is in the cor...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms2734
更新日期:2013-01-01 00:00:00
abstract::High-index dielectric nanoparticles supporting a distinct series of Mie resonances have enabled a new class of optical antennas with unprecedented functionalities. The great wealth of multipolar responses has not only brought in new physical insight but also spurred practical applications. However, how to make such a ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-08057-1
更新日期:2019-01-23 00:00:00
abstract::The ultrafast dynamics of hot carriers in graphene are key to both understanding of fundamental carrier-carrier interactions and carrier-phonon relaxation processes in two-dimensional materials, and understanding of the physics underlying novel high-speed electronic and optoelectronic devices. Many recent experiments ...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms11617
更新日期:2016-05-25 00:00:00
abstract::Antiaromatic and open-shell molecules are attractive because of their distinct electronic and magnetic behaviour. However, their increased reactivity creates a challenge for probing their properties. Here, we describe the on-surface and in-solution generation and characterisation of a highly reactive antiaromatic mole...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-03368-9
更新日期:2018-03-22 00:00:00
abstract::Iron (Fe) is essential for life, but in excess can cause oxidative cytotoxicity through the generation of Fe-catalyzed reactive oxygen species. It is yet unknown which genes and mechanisms can provide Fe-toxicity tolerance. Here, we identify S-nitrosoglutathione-reductase (GSNOR) variants underlying a major quantitati...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-11892-5
更新日期:2019-08-29 00:00:00
abstract::Ruddlesden-Popper halide perovskites are 2D solution-processed quantum wells with a general formula A2A'n-1M n X3n+1, where optoelectronic properties can be tuned by varying the perovskite layer thickness (n-value), and have recently emerged as efficient semiconductors with technologically relevant stability. However,...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-04659-x
更新日期:2018-06-08 00:00:00
abstract::Hepatocellular carcinoma (HCC) is a leading cause of cancer deaths, but its molecular heterogeneity hampers the design of targeted therapies. Currently, the only therapeutic option for advanced HCC is Sorafenib, an inhibitor whose targets include RAF. Unexpectedly, RAF1 expression is reduced in human HCC samples. Mode...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms13781
更新日期:2016-12-21 00:00:00
abstract::The sigma-2 receptor, whose gene remains to be cloned, has been validated as a biomarker for tumour cell proliferation. Here we report the use of a novel photoaffinity probe, WC-21, to identify the sigma-2 receptor-binding site. WC-21, a sigma-2 ligand containing both a photoactive azide moiety and a fluorescein isoth...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms1386
更新日期:2011-07-05 00:00:00
abstract::Microfluidics by soft lithography has proven to be of key importance for biophysics and life science research. While being based on replicating structures of a master mold using benchtop devices, design modifications are time consuming and require sophisticated cleanroom equipment. Here, we introduce virtual fluidic c...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-15813-9
更新日期:2020-05-04 00:00:00
abstract::Sensitive detection of protein interactions and post-translational modifications of native proteins is a challenge for research and diagnostic purposes. A method for this, which could be used in point-of-care devices and high-throughput screening, should be reliable, cost effective and robust. To achieve this, here we...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms8294
更新日期:2015-06-12 00:00:00
abstract::Autophagy is the major cellular pathway by which macromolecules are degraded, and amino acid depletion powerfully activates autophagy. MAP4K3, or germinal-center kinase-like kinase, is required for robust cell growth in response to amino acids, but the basis for MAP4K3 regulation of cellular metabolic disposition rema...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-03340-7
更新日期:2018-03-05 00:00:00
abstract::Shigella, the agent of bacillary dysentery, invades epithelial cells by locally inducing actin reorganization. Upon cell invasion, Shigella induces calcium (Ca(2+)) signalling, but its role in invasion has remained unclear. Here we show that components involved in inositol 1, 4, 5- trisphosphate (InsP3) signalling are...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms2561
更新日期:2013-01-01 00:00:00
abstract::Macrophages serve multiple functions including immune regulation, morphogenesis, tissue homeostasis and healing reactions. The current paradigm holds that mammary gland macrophages first arise postnatally during the prepubertal period from the bone marrow-derived monocytes. Here we delineate the origins of tissue-resi...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-08065-1
更新日期:2019-01-17 00:00:00
abstract::Lungs resected for adenocarcinomas often harbour minute discrete foci of cytologically atypical pneumocyte proliferations designated as atypical adenomatous hyperplasia (AAH). Evidence suggests that AAH represents an initial step in the progression to adenocarcinoma in situ (AIS), minimally invasive adenocarcinoma (MI...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms9258
更新日期:2015-09-16 00:00:00
abstract::The activation of a neuronal ensemble in the central nucleus of the amygdala (CeA) during alcohol withdrawal has been hypothesized to induce high levels of alcohol drinking in dependent rats. In the present study we describe that the CeA neuronal ensemble that is activated by withdrawal from chronic alcohol exposure c...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-09183-0
更新日期:2019-03-18 00:00:00
abstract::CD11b(+)Gr-1(+) myeloid-derived suppressor cells (MDSCs) expand in the spleen during cancer and promote progression through suppression of cytotoxic T cells. An anti-inflammatory reflex arc involving the vagus nerve and memory T cells is necessary for resolution of acute inflammation. Failure of this neural circuit co...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms10517
更新日期:2016-02-04 00:00:00
abstract::The T helper 9 (Th9) cell transcriptional network is formed by an equilibrium of signals induced by cytokines and antigen presentation. Here we show that, within this network, two interferon regulatory factors (IRF), IRF1 and IRF4, display opposing effects on Th9 differentiation. IRF4 dose-dependently promotes, wherea...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms15366
更新日期:2017-05-12 00:00:00
abstract::Sex differences exist in behaviors, disease and neuropsychiatric disorders. Sexual dimorphisms however, have yet to be studied across the whole brain and across a comprehensive time course of postnatal development. Here, we use manganese-enhanced MRI (MEMRI) to longitudinally image male and female C57BL/6J mice across...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-04921-2
更新日期:2018-07-05 00:00:00
abstract::Ecosystems are composed of complex networks of many species interacting in different ways. While ecologists have long studied food webs of feeding interactions, recent studies increasingly focus on mutualistic networks including plants that exchange food for reproductive services provided by animals such as pollinator...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-15688-w
更新日期:2020-05-01 00:00:00
abstract::Synthetic DNA is becoming an attractive substrate for digital data storage due to its density, durability, and relevance in biological research. A major challenge in making DNA data storage a reality is that reading DNA back into data using sequencing by synthesis remains a laborious, slow and expensive process. Here,...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-019-10978-4
更新日期:2019-07-03 00:00:00
abstract::While distinct stages of natural killer (NK) cell development have been defined, the molecular interactions that shape human NK cell maturation are poorly understood. Here we define intercellular interactions between developing NK cells and stromal cells which, through contact-dependent mechanisms, promote the generat...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms12171
更新日期:2016-07-20 00:00:00
abstract::The laboratory mouse serves as an important model system for studying gene, brain and behavioural interactions. Powerful methods of gene targeting have helped to decipher gene-function associations in human diseases. Yet, the laboratory mouse, obtained after decades of human-driven artificial selection, inbreeding, an...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms5569
更新日期:2014-08-05 00:00:00
abstract::Liquid phase separation into two or more coexisting phases has emerged as a new paradigm for understanding subcellular organization, prebiotic life, and the origins of disease. The design principles underlying biomolecular phase separation have the potential to drive the development of novel liquid-based organelles an...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-020-18224-y
更新日期:2020-09-15 00:00:00
abstract::The heterogeneity of neurodegenerative diseases is a key confound to disease understanding and treatment development, as study cohorts typically include multiple phenotypes on distinct disease trajectories. Here we introduce a machine-learning technique-Subtype and Stage Inference (SuStaIn)-able to uncover data-driven...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/s41467-018-05892-0
更新日期:2018-10-15 00:00:00
abstract::Nascent polypeptides can induce ribosome stalling, regulating downstream genes. Stalling of ErmBL peptide translation in the presence of the macrolide antibiotic erythromycin leads to resistance in Streptococcus sanguis. To reveal this stalling mechanism we obtained 3.6-Å-resolution cryo-EM structures of ErmBL-stalled...
journal_title:Nature communications
pub_type: 杂志文章
doi:10.1038/ncomms12026
更新日期:2016-07-06 00:00:00