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Identification of Novel Quantitative Trait Loci Linked to Crown Rot Resistance in Spring Wheat.

Abstract：

:Crown rot (CR), caused by various Fusarium species, is a major disease in many cereal-growing regions worldwide. Fusarium culmorum is one of the most important species, which can cause significant yield losses in wheat. A set of 126 advanced International Maize and Wheat Improvement Center (CIMMYT) spring bread wheat lines were phenotyped against CR for field crown, greenhouse crown and stem, and growth room crown resistance scores. Of these, 107 lines were genotyped using Diversity Array Technology (DArT) markers to identify quantitative trait loci linked to CR resistance by genome-wide association study. Results of the population structure analysis grouped the accessions into three sub-groups. Genome wide linkage disequilibrium was large and declined on average within 20 cM (centi-Morgan) in the panel. General linear model (GLM), mixed linear model (MLM), and naïve models were tested for each CR score and the best model was selected based on quarantine-quarantine plots. Three marker-trait associations (MTAs) were identified linked to CR resistance; two of these on chromosome 3B were associated with field crown scores, each explaining 11.4% of the phenotypic variation and the third MTA on chromosome 2D was associated with greenhouse stem score and explained 11.6% of the phenotypic variation. Together, these newly identified loci provide opportunity for wheat breeders to exploit in enhancing CR resistance via marker-assisted selection or deployment in genomic selection in wheat breeding programs.

journal_name

Int J Mol Sci

journal_title

International journal of molecular sciences

authors

Erginbas-Orakci G,Sehgal D,Sohail Q,Ogbonnaya F,Dreisigacker S,Pariyar SR,Dababat AA

doi

10.3390/ijms19092666

subject

Has Abstract

pub_date

2018-09-08 00:00:00

issue

9

issn

1422-0067

pii

ijms19092666

journal_volume

19

pub_type

杂志文章

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