Differential DNA methylation of potassium channel KCa3.1 and immune signalling pathways is associated with infant immune responses following BCG vaccination.

Abstract:

:Bacillus Calmette-Guérin (BCG) is the only licensed vaccine for tuberculosis (TB) and induces highly variable protection against pulmonary disease in different countries. We hypothesised that DNA methylation is one of the molecular mechanisms driving variability in BCG-induced immune responses. DNA methylation in peripheral blood mononuclear cells (PBMC) from BCG vaccinated infants was measured and comparisons made between low and high BCG-specific cytokine responders. We found 318 genes and 67 pathways with distinct patterns of DNA methylation, including immune pathways, e.g. for T cell activation, that are known to directly affect immune responses. We also highlight signalling pathways that could indirectly affect the BCG-induced immune response: potassium and calcium channel, muscarinic acetylcholine receptor, G Protein coupled receptor (GPCR), glutamate signalling and WNT pathways. This study suggests that in addition to immune pathways, cellular processes drive vaccine-induced immune responses. Our results highlight mechanisms that require consideration when designing new TB vaccines.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Hasso-Agopsowicz M,Scriba TJ,Hanekom WA,Dockrell HM,Smith SG

doi

10.1038/s41598-018-31537-9

subject

Has Abstract

pub_date

2018-08-30 00:00:00

pages

13086

issue

1

issn

2045-2322

pii

10.1038/s41598-018-31537-9

journal_volume

8

pub_type

杂志文章
  • Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs.

    abstract::Based on the structural complexity of ribosomes, 16S rRNA genes are considered species-specific and hence used for bacterial phylogenetic analysis. However, a growing number of reports suggest the occurrence of horizontal gene transfer, raising genealogical questions. Here we show the genetic interoperability and prom...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47807-z

    authors: Miyazaki K,Tomariguchi N

    更新日期:2019-08-02 00:00:00

  • In vitro and in vivo investigation of osteogenic properties of self-contained phosphate-releasing injectable purine-crosslinked chitosan-hydroxyapatite constructs.

    abstract::Bone fracture repair is a multifaceted, coordinated physiological process that requires new bone formation and resorption, eventually returning the fractured bone to its original state. Currently, a variety of different approaches are pursued to accelerate the repair of defective bones, which include the use of 'gold ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67886-7

    authors: Jahan K,Manickam G,Tabrizian M,Murshed M

    更新日期:2020-07-14 00:00:00

  • A 2-Cys peroxiredoxin in response to oxidative stress in the pine wood nematode, Bursaphelenchus xylophilus.

    abstract::The pine wood nematode, Bursaphelenchus xylophilus, is the causal agent of pine wilt disease that has devastated pine forests in Asia. Parasitic nematodes are known to have evolved antioxidant stress responses that defend against host plant defenses. In this study, the infestation of whitebark pine, Pinus bungean, wit...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27438

    authors: Li Z,Zhang Q,Zhou X

    更新日期:2016-06-07 00:00:00

  • Progress towards non-invasive diagnosis and follow-up of celiac disease in children; a prospective multicentre study to the usefulness of plasma I-FABP.

    abstract::This prospective study investigates whether measurement of plasma intestinal-fatty acid binding protein (I-FABP), a sensitive marker for small intestinal epithelial damage, improves non-invasive diagnosing of celiac disease (CD), and whether I-FABP levels are useful to evaluate mucosal healing in patients on a gluten-...

    journal_title:Scientific reports

    pub_type: 杂志文章,多中心研究

    doi:10.1038/s41598-017-07242-4

    authors: Adriaanse MPM,Mubarak A,Riedl RG,Ten Kate FJW,Damoiseaux JGMC,Buurman WA,Houwen RHJ,Vreugdenhil ACE,Celiac Disease Study Group.

    更新日期:2017-08-17 00:00:00

  • The membrane-topogenic vectorial behaviour of Nrf1 controls its post-translational modification and transactivation activity.

    abstract::The integral membrane-bound Nrf1 transcription factor fulfils important functions in maintaining cellular homeostasis and organ integrity, but how it is controlled vectorially is unknown. Herein, creative use of Gal4-based reporter assays with protease protection assays (GRAPPA), and double fluorescence protease prote...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02006

    authors: Zhang Y,Hayes JD

    更新日期:2013-01-01 00:00:00

  • miR-30a acts as a tumor suppressor by double-targeting COX-2 and BCL9 in H. pylori gastric cancer models.

    abstract::Helicobacter pylori (H. pylori) is one of the most important factors that affect the development of gastric cancer, and its mechanism remains un-elucidated. Our present study found that, miR-30a is crucial for regulating the growth and migration of H. pylori infected gastric cancer in vitro by targeting COX-2 and BCL9...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07193-w

    authors: Liu X,Ji Q,Zhang C,Liu X,Liu Y,Liu N,Sui H,Zhou L,Wang S,Li Q

    更新日期:2017-08-02 00:00:00

  • Rational design of mutations that change the aggregation rate of a protein while maintaining its native structure and stability.

    abstract::A wide range of human diseases is associated with mutations that, destabilizing proteins native state, promote their aggregation. However, the mechanisms leading from folded to aggregated states are still incompletely understood. To investigate these mechanisms, we used a combination of NMR spectroscopy and molecular ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25559

    authors: Camilloni C,Sala BM,Sormanni P,Porcari R,Corazza A,De Rosa M,Zanini S,Barbiroli A,Esposito G,Bolognesi M,Bellotti V,Vendruscolo M,Ricagno S

    更新日期:2016-05-06 00:00:00

  • Transcriptional repressor domain of MBD1 is intrinsically disordered and interacts with its binding partners in a selective manner.

    abstract::Methylation of DNA CpG sites is a major mechanism of epigenetic gene silencing and plays important roles in cell division, development and carcinogenesis. One of its regulators is the 64-residue C-terminal Transcriptional Repressor Domain (the TRD) of MBD1, which recruits several repressor proteins such as MCAF1, HDAC...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep04896

    authors: Hameed UF,Lim J,Zhang Q,Wasik MA,Yang D,Swaminathan K

    更新日期:2014-05-09 00:00:00

  • Biological surface properties in extracellular vesicles and their effect on cargo proteins.

    abstract::Ultracentrifugationon sucrose density gradientappears to be the best purification protocol for extracellular vesicle (EVs) purification. After this step, to reduce disulfide bridges linking exogenous proteins to the vesicles, the collected samples are routinely washed and treated with dithiothreitol (DTT). Such incuba...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47598-3

    authors: Santucci L,Bruschi M,Del Zotto G,Antonini F,Ghiggeri GM,Panfoli I,Candiano G

    更新日期:2019-09-10 00:00:00

  • Chemical and structural stability of lithium-ion battery electrode materials under electron beam.

    abstract::The investigation of chemical and structural dynamics in battery materials is essential to elucidation of structure-property relationships for rational design of advanced battery materials. Spatially resolved techniques, such as scanning/transmission electron microscopy (S/TEM), are widely applied to address this chal...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05694

    authors: Lin F,Markus IM,Doeff MM,Xin HL

    更新日期:2014-07-16 00:00:00

  • One-step instant synthesis of protein-conjugated quantum dots at room temperature.

    abstract::We present a new general facile strategy for the preparation of protein-functionalized QDs in a single step at ambient conditions. We demonstrated that highly luminescent red to near-infrared (NIR) protein-functionalized QDs could be synthesized at room temperature in one second through a one-pot reaction that proceed...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02825

    authors: He X,Gao L,Ma N

    更新日期:2013-10-02 00:00:00

  • Holocene evolution of Portus Pisanus, the lost harbour of Pisa.

    abstract::The ancient harbour of Pisa, Portus Pisanus, was one of Italy's most influential seaports for many centuries. Nonetheless, very little is known about its oldest harbour and the relationships between environmental evolution and the main stages of harbour history. The port complex that ensured Pisa's position as an econ...

    journal_title:Scientific reports

    pub_type: 历史文章,杂志文章

    doi:10.1038/s41598-018-29890-w

    authors: Kaniewski D,Marriner N,Morhange C,Vacchi M,Sarti G,Rossi V,Bini M,Pasquinucci M,Allinne C,Otto T,Luce F,Van Campo E

    更新日期:2018-08-23 00:00:00

  • BCS thermal vacuum of fermionic superfluids and its perturbation theory.

    abstract::The thermal field theory is applied to fermionic superfluids by doubling the degrees of freedom of the BCS theory. We construct the two-mode states and the corresponding Bogoliubov transformation to obtain the BCS thermal vacuum. The expectation values with respect to the BCS thermal vacuum produce the statistical ave...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30438-1

    authors: Hou XY,Huang Z,Guo H,He Y,Chien CC

    更新日期:2018-08-10 00:00:00

  • DNA damage and Repair Modify DNA methylation and Chromatin Domain of the Targeted Locus: Mechanism of allele methylation polymorphism.

    abstract::We characterize the changes in chromatin structure, DNA methylation and transcription during and after homologous DNA repair (HR). We find that HR modifies the DNA methylation pattern of the repaired segment. HR also alters local histone H3 methylation as well chromatin structure by inducing DNA-chromatin loops connec...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep33222

    authors: Russo G,Landi R,Pezone A,Morano A,Zuchegna C,Romano A,Muller MT,Gottesman ME,Porcellini A,Avvedimento EV

    更新日期:2016-09-15 00:00:00

  • Local Nash equilibrium in social networks.

    abstract::Nash equilibrium is widely present in various social disputes. As of now, in structured static populations, such as social networks, regular, and random graphs, the discussions on Nash equilibrium are quite limited. In a relatively stable static gaming network, a rational individual has to comprehensively consider all...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06224

    authors: Zhang Y,Aziz-Alaoui MA,Bertelle C,Guan J

    更新日期:2014-08-29 00:00:00

  • Elevated nitrogen allows the weak invasive plant Galinsoga quadriradiata to become more vigorous with respect to inter-specific competition.

    abstract::Elevated nitrogen associated with global change is believed to promote the invasion of many vigorous exotic plants. However, it is unclear how a weak exotic plant will respond to elevated nitrogen in the future. In this study, the competitive outcome of a weak invasive plant (Galinsoga quadriradiata) and two non-invas...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21546-z

    authors: Liu G,Yang YB,Zhu ZH

    更新日期:2018-02-16 00:00:00

  • Gamma oryzanol impairs alcohol-induced anxiety-like behavior in mice via upregulation of central monoamines associated with Bdnf and Il-1β signaling.

    abstract::Adolescent alcohol exposure may increase anxiety-like behaviors by altering central monoaminergic functions and other important neuronal pathways. The present study was designed to investigate the anxiolytic effect of 0.5% γ-oryzanol (GORZ) and its neurochemical and molecular mechanisms under chronic 10% ethanol consu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67689-w

    authors: Akter S,Uddin KR,Sasaki H,Lyu Y,Shibata S

    更新日期:2020-06-30 00:00:00

  • Evening home lighting adversely impacts the circadian system and sleep.

    abstract::The regular rise and fall of the sun resulted in the development of 24-h rhythms in virtually all organisms. In an evolutionary heartbeat, humans have taken control of their light environment with electric light. Humans are highly sensitive to light, yet most people now use light until bedtime. We evaluated the impact...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75622-4

    authors: Cain SW,McGlashan EM,Vidafar P,Mustafovska J,Curran SPN,Wang X,Mohamed A,Kalavally V,Phillips AJK

    更新日期:2020-11-05 00:00:00

  • Projecting groundwater storage changes in California's Central Valley.

    abstract::Accurate and detailed knowledge of California's groundwater is of paramount importance for statewide water resources planning and management, and to sustain a multi-billion-dollar agriculture industry during prolonged droughts. In this study, we use water supply and demand information from California's Department of W...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31210-1

    authors: Massoud EC,Purdy AJ,Miro ME,Famiglietti JS

    更新日期:2018-08-27 00:00:00

  • Multi-photon absorption limits to heralded single photon sources.

    abstract::Single photons are of paramount importance to future quantum technologies, including quantum communication and computation. Nonlinear photonic devices using parametric processes offer a straightforward route to generating photons, however additional nonlinear processes may come into play and interfere with these sourc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03087

    authors: Husko CA,Clark AS,Collins MJ,De Rossi A,Combrié S,Lehoucq G,Rey IH,Krauss TF,Xiong C,Eggleton BJ

    更新日期:2013-11-04 00:00:00

  • Dibutyl phthalate alters the metabolic pathways of microbes in black soils.

    abstract::Dibutyl phthalate (DBP) is well known as a high-priority pollutant. This study explored the impacts of DBP on the metabolic pathways of microbes in black soils in the short term (20 days). The results showed that the microbial communities were changed in black soils with DBP. In nitrogen cycling, the abundances of the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21030-8

    authors: Xu W,You Y,Wang Z,Chen W,Zeng J,Zhao X,Su Y

    更新日期:2018-02-08 00:00:00

  • Peptide-Au Clusters Induced Tumor Cells Apoptosis via Targeting Glutathione Peroxidase-1: The Molecular Dynamics Assisted Experimental Studies.

    abstract::The original motivation of the article is to give a systematic investigation on the protocol of combining computer simulation and accurate synthesis of serial peptide protected gold clusters for potent tumor targeting therapy. Glutathione peroxidase-1 (GPx-1) is a crucial antioxidant selenoenzyme that regulates cellul...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00278-6

    authors: Liu M,Gao L,Zhao L,He J,Yuan Q,Zhang P,Zhao Y,Gao X

    更新日期:2017-03-09 00:00:00

  • Dispersal ability determines the scaling properties of species abundance distributions: a case study using arthropods from the Azores.

    abstract::Species abundance distributions (SAD) are central to the description of diversity and have played a major role in the development of theories of biodiversity and biogeography. However, most work on species abundance distributions has focused on one single spatial scale. Here we used data on arthropods to test predicti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04126-5

    authors: Borda-de-Água L,Whittaker RJ,Cardoso P,Rigal F,Santos AMC,Amorim IR,Parmakelis A,Triantis KA,Pereira HM,Borges PAV

    更新日期:2017-06-20 00:00:00

  • Chromophore-Assisted Light Inactivation of Mitochondrial Electron Transport Chain Complex II in Caenorhabditis elegans.

    abstract::Mitochondria play critical roles in meeting cellular energy demand, in cell death, and in reactive oxygen species (ROS) and stress signaling. Most Caenorhabditis elegans loss-of-function (lf) mutants in nuclear-encoded components of the respiratory chain are non-viable, emphasizing the importance of respiratory functi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29695

    authors: Wojtovich AP,Wei AY,Sherman TA,Foster TH,Nehrke K

    更新日期:2016-07-21 00:00:00

  • Factors influencing neurocognitive function in patients with neuroepithelial tumors.

    abstract::Though cognitive function is proven to be an independent predictor of survival in patients with intrinsic brain tumors, cognitive functions are still rarely considered. Aim of this study was to assess neurocognitive function and to identify risk factors for neurocognitive deficits. 103 patients with primary neuroepith...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17833-w

    authors: Gempt J,Lange N,Bette S,Foreman SC,Cammardella JH,Albertshauser J,Gradtke C,Buchmann N,Ryang YM,Schmidt-Graf F,Meyer B,Ringel F

    更新日期:2017-12-19 00:00:00

  • Partitioning the regional and local drivers of phylogenetic and functional diversity along temperate elevational gradients on an East Asian peninsula.

    abstract::Species-centric approaches to biodiversity in ecological research are limited in their ability to reflect the evolutionary history and functional diversity of community assembly. Recently, the introduction of alternative facets of biodiversity, such as phylogenetic and functional diversity, has shed light on this prob...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21266-4

    authors: Chun JH,Lee CB

    更新日期:2018-02-12 00:00:00

  • Microsphere-mediated optical contrast tuning for designing imaging systems with adjustable resolution gain.

    abstract::Upon illumination, a dielectric microsphere (μS) can generate a photonic nanojet (PNJ), which plays a role in the super-resolution imaging of a sample placed in the μS's immediate proximity. Recent microscopy implementations pioneered this concept but, despite the experimental characterization and theoretical modeling...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33604-7

    authors: Migliozzi D,Gijs MAM,Huszka G

    更新日期:2018-10-12 00:00:00

  • Trophic factor-induced activity 'signature' regulates the functional expression of postsynaptic excitatory acetylcholine receptors required for synaptogenesis.

    abstract::Highly coordinated and coincidental patterns of activity-dependent mechanisms ("fire together wire together") are thought to serve as inductive signals during synaptogenesis, enabling neuronal pairing between specific sub-sets of excitatory partners. However, neither the nature of activity triggers, nor the "activity ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09523

    authors: Luk CC,Lee AJ,Wijdenes P,Zaidi W,Leung A,Wong NY,Andrews J,Syed NI

    更新日期:2015-04-01 00:00:00

  • Effects of microbial inoculants on the fermentation characteristics and microbial communities of sweet sorghum bagasse silage.

    abstract::Sweet sorghum bagasse (SSB) is a promising raw material for silage fermentation due to its high residual nutritive, but the efficient fermentation strategy of SSB has not been reported yet. This study evaluated the effects of microbial inoculant on the fermentation quality, chemical composition and microbial community...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57628-0

    authors: Dong M,Li Q,Xu F,Wang S,Chen J,Li W

    更新日期:2020-01-21 00:00:00

  • NKG2D+CD4+ T Cells Kill Regulatory T Cells in a NKG2D-NKG2D Ligand- Dependent Manner in Systemic Lupus Erythematosus.

    abstract::Systemic lupus erythematosus (SLE) features a decreased pool of CD4+CD25+Foxp3+ T regulatory (Treg) cells. We had previously observed NKG2D+CD4+ T cell expansion in contrast to a decreased pool of Treg cells in SLE patients, but whether NKG2D+CD4+ T cells contribute to the decreased Treg cells remains unclear. In the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01379-y

    authors: Yang D,Tian Z,Zhang M,Yang W,Tang J,Wu Y,Ni B

    更新日期:2017-04-28 00:00:00